[ { "id": "O22287-1.22.22", "start_pos": 22, "end_pos": 22, "uniprot_canonical_ac": "O22287-1", "length": 361, "uniprot_id": "GMPP1_ARATH", "protein_name": "Mannose-1-phosphate guanylyltransferase 1", "refseq_ac": "NP_001189713", "refseq_name": "Glucose-1-phosphate adenylyltransferase family protein", "gene_name": "CYT1", "gene_names_uniprotkb": "CYT1; EMB101; GMP1; HSN1; SOZ1; T5I7.7; VTC1", "gene_names_refseq": "CYT1; CYTOKINESIS DEFECTIVE 1; EMB101; EMBRYO DEFECTIVE 101; GDP-MANNOSE PYROPHOSPHORYLASE 1; GMP1; SENSITIVE TO OZONE 1; SOZ1; T5I7.7; T5I7_7; VITAMIN C DEFECTIVE 1; VTC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetic evidence for the role of GDP-mannose in plant ascorbic acid (vitamin C) biosynthesis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1999-03-30", "authors": "Conklin P L, Norris S R, Wheeler G L, Williams E H, Smirnoff N, Last R L", "evidence": [ { "database": "UniProtKB", "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287" } ], "reference": [ { "type": "PubMed", "id": "10097187", "url": "https://glygen.org/publication/PubMed/10097187" } ] } ], "crossref": [ { "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10097187", "url": "https://glygen.org/publication/PubMed/10097187", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "KALILVGGFGTRLRPLTLSF", "down_seq": "KPLVDFANKPMILHQIEALK", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "In vtc1-1 and vtc1-2; reduced enzyme activity and ascorbate concentrations, and ozone-sensitive.", "evidence": [ { "database": "UniProtKB", "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287" }, { "database": "PubMed", "id": "10097187", "url": "https://glygen.org/publication/PubMed/10097187" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "223", "end_pos": "361" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O22287-1.11.11", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22287-1.27.27", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22287-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "O22287-1", "length": 361, "uniprot_id": "GMPP1_ARATH", "protein_name": "Mannose-1-phosphate guanylyltransferase 1", "refseq_ac": "NP_001189713", "refseq_name": "Glucose-1-phosphate adenylyltransferase family protein", "gene_name": "CYT1", "gene_names_uniprotkb": "CYT1; EMB101; GMP1; HSN1; SOZ1; T5I7.7; VTC1", "gene_names_refseq": "CYT1; CYTOKINESIS DEFECTIVE 1; EMB101; EMBRYO DEFECTIVE 101; GDP-MANNOSE PYROPHOSPHORYLASE 1; GMP1; SENSITIVE TO OZONE 1; SOZ1; T5I7.7; T5I7_7; VITAMIN C DEFECTIVE 1; VTC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "D27E mutation of VTC1 impairs the interaction with CSN5B and enhances ascorbic acid biosynthesis and seedling growth in Arabidopsis.", "journal": "Plant molecular biology", "date": "2016-11", "authors": "Li Shenghui, Wang Juan, Yu Yanwen, Wang Fengru, Dong Jingao, Huang Rongfeng", "evidence": [ { "database": "UniProtKB", "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287" } ], "reference": [ { "type": "PubMed", "id": "27561782", "url": "https://glygen.org/publication/PubMed/27561782" } ] } ], "crossref": [ { "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27561782", "url": "https://glygen.org/publication/PubMed/27561782", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "VGGFGTRLRPLTLSFPKPLV", "down_seq": "FANKPMILHQIEALKAVGVD", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "E", "comment": "Abolishes interaction with CSN5B and subsequent degradation in the dark by the 26S proteasome, and increases ascorbate accumulation in seedlings.", "evidence": [ { "database": "UniProtKB", "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287" }, { "database": "PubMed", "id": "27561782", "url": "https://glygen.org/publication/PubMed/27561782" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "223", "end_pos": "361" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O22287-1.11.11", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O22287-1.22.22", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22287-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "O22287-1", "length": 361, "uniprot_id": "GMPP1_ARATH", "protein_name": "Mannose-1-phosphate guanylyltransferase 1", "refseq_ac": "NP_001189713", "refseq_name": "Glucose-1-phosphate adenylyltransferase family protein", "gene_name": "CYT1", "gene_names_uniprotkb": "CYT1; EMB101; GMP1; HSN1; SOZ1; T5I7.7; VTC1", "gene_names_refseq": "CYT1; CYTOKINESIS DEFECTIVE 1; EMB101; EMBRYO DEFECTIVE 101; GDP-MANNOSE PYROPHOSPHORYLASE 1; GMP1; SENSITIVE TO OZONE 1; SOZ1; T5I7.7; T5I7_7; VITAMIN C DEFECTIVE 1; VTC1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis cyt1 mutants are deficient in a mannose-1-phosphate guanylyltransferase and point to a requirement of N-linked glycosylation for cellulose biosynthesis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2001-02-27", "authors": "Lukowitz W, Nickle T C, Meinke D W, Last R L, Conklin P L, Somerville C R", "evidence": [ { "database": "UniProtKB", "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287" } ], "reference": [ { "type": "PubMed", "id": "11226227", "url": "https://glygen.org/publication/PubMed/11226227" } ] } ], "crossref": [ { "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11226227", "url": "https://glygen.org/publication/PubMed/11226227", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "TKLEIKITCSQETEPLGTAG", "down_seq": "LALARDKLLDGSGEPFFVLN", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "L", "comment": "In cyt1-1; deficient in N-glycosylation and cellulose, and embryo lethal.", "evidence": [ { "database": "UniProtKB", "id": "O22287", "url": "https://www.uniprot.org/uniprotkb/O22287" }, { "database": "PubMed", "id": "11226227", "url": "https://glygen.org/publication/PubMed/11226227" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "223", "end_pos": "361" }, { "start_pos": "22", "end_pos": "22" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22315-1.110.110", "start_pos": 110, "end_pos": 110, "uniprot_canonical_ac": "O22315-1", "length": 303, "uniprot_id": "SR34_ARATH", "protein_name": "Serine/arginine-rich-splicing factor SR34", "refseq_ac": "NP_001318908", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SR34", "gene_names_uniprotkb": "SR34; F22D16.16; F22D16_30; SF2; SR1; SRP34", "gene_names_refseq": "ATSRP34; At-SR34; F22D16.16; F22D16_16; SR1; SR34; SRP34; Serine/Arginine-Rich Protein Splicing Factor 34", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22315", "url": "https://www.uniprot.org/uniprotkb/O22315" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TRGSFNGGGRGGGRGRGDGG", "down_seq": "RGPSRRSEFRVLVTGLPSSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "site_lbl": "Ser110" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22315-1.269.269", "start_pos": 269, "end_pos": 269, "uniprot_canonical_ac": "O22315-1", "length": 303, "uniprot_id": "SR34_ARATH", "protein_name": "Serine/arginine-rich-splicing factor SR34", "refseq_ac": "NP_001318908", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SR34", "gene_names_uniprotkb": "SR34; F22D16.16; F22D16_30; SF2; SR1; SRP34", "gene_names_refseq": "ATSRP34; At-SR34; F22D16.16; F22D16_16; SR1; SR34; SRP34; Serine/Arginine-Rich Protein Splicing Factor 34", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22315", "url": "https://www.uniprot.org/uniprotkb/O22315" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSRSPGPRSKSRSPSPRRSR", "down_seq": "RSRSPLPSVQKEGSKSPSKP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser269" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O22315-1.271.271", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22315-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O22315-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O22315-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22315-1.287.287", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22315-1.271.271", "start_pos": 271, "end_pos": 271, "uniprot_canonical_ac": "O22315-1", "length": 303, "uniprot_id": "SR34_ARATH", "protein_name": "Serine/arginine-rich-splicing factor SR34", "refseq_ac": "NP_001318908", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SR34", "gene_names_uniprotkb": "SR34; F22D16.16; F22D16_30; SF2; SR1; SRP34", "gene_names_refseq": "ATSRP34; At-SR34; F22D16.16; F22D16_16; SR1; SR34; SRP34; Serine/Arginine-Rich Protein Splicing Factor 34", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22315", "url": "https://www.uniprot.org/uniprotkb/O22315" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O22315-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSPGPRSKSRSPSPRRSRSR", "down_seq": "RSPLPSVQKEGSKSPSKPSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser271" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O22315-1.269.269", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22315-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O22315-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O22315-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O22315-1.287.287", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O22315-1.290.290", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22315-1.273.273", "start_pos": 273, "end_pos": 273, "uniprot_canonical_ac": "O22315-1", "length": 303, "uniprot_id": "SR34_ARATH", "protein_name": "Serine/arginine-rich-splicing factor SR34", "refseq_ac": "NP_001318908", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SR34", "gene_names_uniprotkb": "SR34; F22D16.16; F22D16_30; SF2; SR1; SRP34", "gene_names_refseq": "ATSRP34; At-SR34; F22D16.16; F22D16_16; SR1; SR34; SRP34; Serine/Arginine-Rich Protein Splicing Factor 34", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22315", "url": "https://www.uniprot.org/uniprotkb/O22315" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O22315-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315-1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGPRSKSRSPSPRRSRSRSR", "down_seq": "PLPSVQKEGSKSPSKPSPAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser273" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O22315-1.269.269", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22315-1.271.271", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O22315-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O22315-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O22315-1.287.287", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O22315-1.290.290", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22315-1.283.283", "start_pos": 283, "end_pos": 283, "uniprot_canonical_ac": "O22315-1", "length": 303, "uniprot_id": "SR34_ARATH", "protein_name": "Serine/arginine-rich-splicing factor SR34", "refseq_ac": "NP_001318908", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SR34", "gene_names_uniprotkb": "SR34; F22D16.16; F22D16_30; SF2; SR1; SRP34", "gene_names_refseq": "ATSRP34; At-SR34; F22D16.16; F22D16_16; SR1; SR34; SRP34; Serine/Arginine-Rich Protein Splicing Factor 34", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22315", "url": "https://www.uniprot.org/uniprotkb/O22315" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPRRSRSRSRSPLPSVQKEG", "down_seq": "KSPSKPSPAKSPIHTRSPSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser283" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O22315-1.269.269", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O22315-1.271.271", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O22315-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22315-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22315-1.287.287", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22315-1.290.290", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22315-1.294.294", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22315-1.285.285", "start_pos": 285, "end_pos": 285, "uniprot_canonical_ac": "O22315-1", "length": 303, "uniprot_id": "SR34_ARATH", "protein_name": "Serine/arginine-rich-splicing factor SR34", "refseq_ac": "NP_001318908", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SR34", "gene_names_uniprotkb": "SR34; F22D16.16; F22D16_30; SF2; SR1; SRP34", "gene_names_refseq": "ATSRP34; At-SR34; F22D16.16; F22D16_16; SR1; SR34; SRP34; Serine/Arginine-Rich Protein Splicing Factor 34", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22315", "url": "https://www.uniprot.org/uniprotkb/O22315" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RRSRSRSRSPLPSVQKEGSK", "down_seq": "PSKPSPAKSPIHTRSPSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser285" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O22315-1.269.269", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O22315-1.271.271", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O22315-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22315-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22315-1.287.287", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22315-1.290.290", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O22315-1.294.294", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22315-1.287.287", "start_pos": 287, "end_pos": 287, "uniprot_canonical_ac": "O22315-1", "length": 303, "uniprot_id": "SR34_ARATH", "protein_name": "Serine/arginine-rich-splicing factor SR34", "refseq_ac": "NP_001318908", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SR34", "gene_names_uniprotkb": "SR34; F22D16.16; F22D16_30; SF2; SR1; SRP34", "gene_names_refseq": "ATSRP34; At-SR34; F22D16.16; F22D16_16; SR1; SR34; SRP34; Serine/Arginine-Rich Protein Splicing Factor 34", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22315", "url": "https://www.uniprot.org/uniprotkb/O22315" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRSRSRSPLPSVQKEGSKSP", "down_seq": "KPSPAKSPIHTRSPSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser287" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22315-1.269.269", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O22315-1.271.271", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O22315-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22315-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22315-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22315-1.290.290", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22315-1.294.294", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22315-1.290.290", "start_pos": 290, "end_pos": 290, "uniprot_canonical_ac": "O22315-1", "length": 303, "uniprot_id": "SR34_ARATH", "protein_name": "Serine/arginine-rich-splicing factor SR34", "refseq_ac": "NP_001318908", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SR34", "gene_names_uniprotkb": "SR34; F22D16.16; F22D16_30; SF2; SR1; SRP34", "gene_names_refseq": "ATSRP34; At-SR34; F22D16.16; F22D16_16; SR1; SR34; SRP34; Serine/Arginine-Rich Protein Splicing Factor 34", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22315", "url": "https://www.uniprot.org/uniprotkb/O22315" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RSRSPLPSVQKEGSKSPSKP", "down_seq": "PAKSPIHTRSPSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser290" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O22315-1.271.271", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O22315-1.273.273", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22315-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O22315-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22315-1.287.287", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22315-1.294.294", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22315-1.294.294", "start_pos": 294, "end_pos": 294, "uniprot_canonical_ac": "O22315-1", "length": 303, "uniprot_id": "SR34_ARATH", "protein_name": "Serine/arginine-rich-splicing factor SR34", "refseq_ac": "NP_001318908", "refseq_name": "RNA-binding (RRM/RBD/RNP motifs) family protein", "gene_name": "SR34", "gene_names_uniprotkb": "SR34; F22D16.16; F22D16_30; SF2; SR1; SRP34", "gene_names_refseq": "ATSRP34; At-SR34; F22D16.16; F22D16_16; SR1; SR34; SRP34; Serine/Arginine-Rich Protein Splicing Factor 34", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22315", "url": "https://www.uniprot.org/uniprotkb/O22315" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLPSVQKEGSKSPSKPSPAK", "down_seq": "PIHTRSPSR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22315", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22315" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser294" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "269", "end_pos": "269" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "273", "end_pos": "273" }, { "start_pos": "283", "end_pos": "283" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "294", "end_pos": "294" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O22315-1.283.283", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O22315-1.285.285", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22315-1.287.287", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22315-1.290.290", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] }, { "title": "Structural insight into brassinosteroid perception by BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "She Ji, Han Zhifu, Kim Tae-Wuk, Wang Jinjing, Cheng Wei, Chang Junbiao, Shi Shuai, Wang Jiawei, Yang Maojun, Wang Zhi-Yong, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666" } ] }, { "title": "Structural basis of steroid hormone perception by the receptor kinase BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "Hothorn Michael, Belkhadir Youssef, Dreux Marlene, Dabi Tsegaye, Noel Joseph P, Wilson Ian A, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665", "database": "PubMed", "categories": [ "Other" ] }, { "id": "3RGX", "url": "https://www.rcsb.org/structure/3RGX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RJ0", "url": "https://www.rcsb.org/structure/3RJ0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSA", "url": "https://www.rcsb.org/structure/4LSA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSX", "url": "https://www.rcsb.org/structure/4LSX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8S", "url": "https://www.rcsb.org/structure/9S8S", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8Z", "url": "https://www.rcsb.org/structure/9S8Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RIZ", "url": "https://www.rcsb.org/structure/3RIZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RGZ", "url": "https://www.rcsb.org/structure/3RGZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RGX|A|112", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RJ0|A|112", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSA|A|112", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSX|B|112", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSX|A|112", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S8S|A|112", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S8Z|A|112", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RIZ|A|112", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RGZ|A|112", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSSLLSLTGLESLFLSNSHI", "down_seq": "GSVSGFKCSASLTSLDLSRN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3RGX&bu=0&command=select+.A:112;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "21666666", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666666" }, { "id": "21666665", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666665" }, { "id": "3RGX", "database": "PDB", "url": "https://www.rcsb.org/structure/3RGX" }, { "id": "3RJ0", "database": "PDB", "url": "https://www.rcsb.org/structure/3RJ0" }, { "id": "4LSA", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSA" }, { "id": "4LSX", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSX" }, { "id": "9S8S", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8S" }, { "id": "9S8Z", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8Z" }, { "id": "3RIZ", "database": "PDB", "url": "https://www.rcsb.org/structure/3RIZ" }, { "id": "3RGZ", "database": "PDB", "url": "https://www.rcsb.org/structure/3RGZ" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.154.154", "start_pos": 154, "end_pos": 154, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] }, { "title": "Structural insight into brassinosteroid perception by BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "She Ji, Han Zhifu, Kim Tae-Wuk, Wang Jinjing, Cheng Wei, Chang Junbiao, Shi Shuai, Wang Jiawei, Yang Maojun, Wang Zhi-Yong, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666" } ] }, { "title": "Crystal structures of the phosphorylated BRI1 kinase domain and implications for brassinosteroid signal initiation.", "journal": "The Plant journal : for cell and molecular biology", "date": "2014-04", "authors": "Bojar Daniel, Martinez Jacobo, Santiago Julia, Rybin Vladimir, Bayliss Richard, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "24461462", "url": "https://glygen.org/publication/PubMed/24461462" } ] }, { "title": "Structural basis of steroid hormone perception by the receptor kinase BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "Hothorn Michael, Belkhadir Youssef, Dreux Marlene, Dabi Tsegaye, Noel Joseph P, Wilson Ian A, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665" } ] } ], "crossref": [ { "id": "3RJ0", "url": "https://www.rcsb.org/structure/3RJ0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSA", "url": "https://www.rcsb.org/structure/4LSA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSX", "url": "https://www.rcsb.org/structure/4LSX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S87", "url": "https://www.rcsb.org/structure/9S87", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8S", "url": "https://www.rcsb.org/structure/9S8S", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8Z", "url": "https://www.rcsb.org/structure/9S8Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8V", "url": "https://www.rcsb.org/structure/9S8V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RIZ", "url": "https://www.rcsb.org/structure/3RIZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RJ0|A|154", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSA|A|154", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSX|B|154", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSX|A|154", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S87|A|154", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S8S|A|154", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S8Z|A|154", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S8V|A|154", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RIZ|A|154", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24461462", "url": "https://glygen.org/publication/PubMed/24461462", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LSGPVTTLTSLGSCSGLKFL", "down_seq": "VSSNTLDFPGKVSGGLKLNS", "glycosylation": [ { "glytoucan_ac": "G81315DD", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3RJ0&bu=0&command=select+.A:154;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn154", "evidence": [ { "id": "3RJ0", "database": "PDB", "url": "https://www.rcsb.org/structure/3RJ0" }, { "id": "4LSA", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSA" }, { "id": "4LSX", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSX" }, { "id": "9S87", "database": "PDB", "url": "https://www.rcsb.org/structure/9S87" }, { "id": "9S8S", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8S" }, { "id": "9S8Z", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8Z" }, { "id": "9S8V", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8V" }, { "id": "3RIZ", "database": "PDB", "url": "https://www.rcsb.org/structure/3RIZ" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn154", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "21666666", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666666" }, { "id": "24461462", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24461462" }, { "id": "21666665", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666665" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] }, { "title": "Structural insight into brassinosteroid perception by BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "She Ji, Han Zhifu, Kim Tae-Wuk, Wang Jinjing, Cheng Wei, Chang Junbiao, Shi Shuai, Wang Jiawei, Yang Maojun, Wang Zhi-Yong, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666" } ] }, { "title": "Structural basis of steroid hormone perception by the receptor kinase BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "Hothorn Michael, Belkhadir Youssef, Dreux Marlene, Dabi Tsegaye, Noel Joseph P, Wilson Ian A, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665", "database": "PubMed", "categories": [ "Other" ] }, { "id": "3RJ0", "url": "https://www.rcsb.org/structure/3RJ0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSA", "url": "https://www.rcsb.org/structure/4LSA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S87", "url": "https://www.rcsb.org/structure/9S87", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6FIF", "url": "https://www.rcsb.org/structure/6FIF", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RIZ", "url": "https://www.rcsb.org/structure/3RIZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RJ0|A|233", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSA|A|233", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S87|A|233", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "6FIF|A|233", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RIZ|A|233", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGDVDVSRCVNLEFLDVSSN", "down_seq": "FSTGIPFLGDCSALQHLDIS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3RJ0&bu=0&command=select+.A:233;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn233", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "21666666", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666666" }, { "id": "21666665", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666665" }, { "id": "3RJ0", "database": "PDB", "url": "https://www.rcsb.org/structure/3RJ0" }, { "id": "4LSA", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSA" }, { "id": "9S87", "database": "PDB", "url": "https://www.rcsb.org/structure/9S87" }, { "id": "6FIF", "database": "PDB", "url": "https://www.rcsb.org/structure/6FIF" }, { "id": "3RIZ", "database": "PDB", "url": "https://www.rcsb.org/structure/3RIZ" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] }, { "title": "Structural insight into brassinosteroid perception by BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "She Ji, Han Zhifu, Kim Tae-Wuk, Wang Jinjing, Cheng Wei, Chang Junbiao, Shi Shuai, Wang Jiawei, Yang Maojun, Wang Zhi-Yong, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666" } ] }, { "title": "Crystal structures of the phosphorylated BRI1 kinase domain and implications for brassinosteroid signal initiation.", "journal": "The Plant journal : for cell and molecular biology", "date": "2014-04", "authors": "Bojar Daniel, Martinez Jacobo, Santiago Julia, Rybin Vladimir, Bayliss Richard, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "24461462", "url": "https://glygen.org/publication/PubMed/24461462" } ] }, { "title": "Structural basis of steroid hormone perception by the receptor kinase BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "Hothorn Michael, Belkhadir Youssef, Dreux Marlene, Dabi Tsegaye, Noel Joseph P, Wilson Ian A, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665" } ] } ], "crossref": [ { "id": "9S87", "url": "https://www.rcsb.org/structure/9S87", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S87|A|275", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S8Z", "url": "https://www.rcsb.org/structure/9S8Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8Z|A|275", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RJ0", "url": "https://www.rcsb.org/structure/3RJ0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSA", "url": "https://www.rcsb.org/structure/4LSA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RJ0|A|275", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSA|A|275", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24461462", "url": "https://glygen.org/publication/PubMed/24461462", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NKLSGDFSRAISTCTELKLL", "down_seq": "ISSNQFVGPIPPLPLKSLQY", "glycosylation": [ { "glytoucan_ac": "G22768VO", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9S87&bu=0&command=select+.A:275;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn275", "evidence": [ { "id": "9S87", "database": "PDB", "url": "https://www.rcsb.org/structure/9S87" } ] }, { "glytoucan_ac": "G55220VL", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9S8Z&bu=0&command=select+.A:275;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn275", "evidence": [ { "id": "9S8Z", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8Z" } ] }, { "glytoucan_ac": "G81315DD", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3RJ0&bu=0&command=select+.A:275;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn275", "evidence": [ { "id": "3RJ0", "database": "PDB", "url": "https://www.rcsb.org/structure/3RJ0" }, { "id": "4LSA", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSA" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn275", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "21666666", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666666" }, { "id": "24461462", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24461462" }, { "id": "21666665", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666665" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 3 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 3 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 3 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 3 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.351.351", "start_pos": 351, "end_pos": 351, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] }, { "title": "Structural insight into brassinosteroid perception by BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "She Ji, Han Zhifu, Kim Tae-Wuk, Wang Jinjing, Cheng Wei, Chang Junbiao, Shi Shuai, Wang Jiawei, Yang Maojun, Wang Zhi-Yong, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666" } ] }, { "title": "Structural basis of steroid hormone perception by the receptor kinase BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "Hothorn Michael, Belkhadir Youssef, Dreux Marlene, Dabi Tsegaye, Noel Joseph P, Wilson Ian A, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665", "database": "PubMed", "categories": [ "Other" ] }, { "id": "3RGX", "url": "https://www.rcsb.org/structure/3RGX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RJ0", "url": "https://www.rcsb.org/structure/3RJ0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSA", "url": "https://www.rcsb.org/structure/4LSA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S87", "url": "https://www.rcsb.org/structure/9S87", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6FIF", "url": "https://www.rcsb.org/structure/6FIF", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RIZ", "url": "https://www.rcsb.org/structure/3RIZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RGZ", "url": "https://www.rcsb.org/structure/3RGZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RGX|A|351", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RJ0|A|351", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSA|A|351", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S87|A|351", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "6FIF|A|351", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RIZ|A|351", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RGZ|A|351", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AVPPFFGSCSLLESLALSSN", "down_seq": "FSGELPMDTLLKMRGLKVLD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3RGX&bu=0&command=select+.A:351;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn351", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "21666666", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666666" }, { "id": "21666665", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666665" }, { "id": "3RGX", "database": "PDB", "url": "https://www.rcsb.org/structure/3RGX" }, { "id": "3RJ0", "database": "PDB", "url": "https://www.rcsb.org/structure/3RJ0" }, { "id": "4LSA", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSA" }, { "id": "9S87", "database": "PDB", "url": "https://www.rcsb.org/structure/9S87" }, { "id": "6FIF", "database": "PDB", "url": "https://www.rcsb.org/structure/6FIF" }, { "id": "3RIZ", "database": "PDB", "url": "https://www.rcsb.org/structure/3RIZ" }, { "id": "3RGZ", "database": "PDB", "url": "https://www.rcsb.org/structure/3RGZ" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O22476-1.344.344", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.387.387", "start_pos": 387, "end_pos": 387, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LKVLDLSFNEFSGELPESLT", "down_seq": "LSASLLTLDLSSNNFSGPIL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn387", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "O22476-1.401.401", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.401.401", "start_pos": 401, "end_pos": 401, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9S87", "url": "https://www.rcsb.org/structure/9S87", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8Z", "url": "https://www.rcsb.org/structure/9S8Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8V", "url": "https://www.rcsb.org/structure/9S8V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S87|A|401", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S8Z|A|401", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S8V|A|401", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LPESLTNLSASLLTLDLSSN", "down_seq": "FSGPILPNLCQNPKNTLQEL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9S87&bu=0&command=select+.A:401;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn401", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "9S87", "database": "PDB", "url": "https://www.rcsb.org/structure/9S87" }, { "id": "9S8Z", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8Z" }, { "id": "9S8V", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8V" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O22476-1.387.387", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.438.438", "start_pos": 438, "end_pos": 438, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LQELYLQNNGFTGKIPPTLS", "down_seq": "CSELVSLHLSFNYLSGTIPS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn438", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.510.510", "start_pos": 510, "end_pos": 510, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insight into brassinosteroid perception by BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "She Ji, Han Zhifu, Kim Tae-Wuk, Wang Jinjing, Cheng Wei, Chang Junbiao, Shi Shuai, Wang Jiawei, Yang Maojun, Wang Zhi-Yong, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "3RGX", "url": "https://www.rcsb.org/structure/3RGX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8Z", "url": "https://www.rcsb.org/structure/9S8Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6FIF", "url": "https://www.rcsb.org/structure/6FIF", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RGZ", "url": "https://www.rcsb.org/structure/3RGZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RGX|A|510", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S8Z|A|510", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "6FIF|A|510", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RGZ|A|510", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LETLILDFNDLTGEIPSGLS", "down_seq": "CTNLNWISLSNNRLTGEIPK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3RGX&bu=0&command=select+.A:510;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn510", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "21666666", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666666" }, { "id": "3RGX", "database": "PDB", "url": "https://www.rcsb.org/structure/3RGX" }, { "id": "9S8Z", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8Z" }, { "id": "6FIF", "database": "PDB", "url": "https://www.rcsb.org/structure/6FIF" }, { "id": "3RGZ", "database": "PDB", "url": "https://www.rcsb.org/structure/3RGZ" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.545.545", "start_pos": 545, "end_pos": 545, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] }, { "title": "Structural insight into brassinosteroid perception by BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "She Ji, Han Zhifu, Kim Tae-Wuk, Wang Jinjing, Cheng Wei, Chang Junbiao, Shi Shuai, Wang Jiawei, Yang Maojun, Wang Zhi-Yong, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666" } ] }, { "title": "Crystal structures of the phosphorylated BRI1 kinase domain and implications for brassinosteroid signal initiation.", "journal": "The Plant journal : for cell and molecular biology", "date": "2014-04", "authors": "Bojar Daniel, Martinez Jacobo, Santiago Julia, Rybin Vladimir, Bayliss Richard, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "24461462", "url": "https://glygen.org/publication/PubMed/24461462" } ] }, { "title": "Structural basis of steroid hormone perception by the receptor kinase BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "Hothorn Michael, Belkhadir Youssef, Dreux Marlene, Dabi Tsegaye, Noel Joseph P, Wilson Ian A, Chory Joanne", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665" } ] } ], "crossref": [ { "id": "3RJ0", "url": "https://www.rcsb.org/structure/3RJ0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSA", "url": "https://www.rcsb.org/structure/4LSA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSX", "url": "https://www.rcsb.org/structure/4LSX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8Z", "url": "https://www.rcsb.org/structure/9S8Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RIZ", "url": "https://www.rcsb.org/structure/3RIZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3RJ0|A|545", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSA|A|545", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSX|B|545", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "9S8Z|A|545", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "3RIZ|A|545", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24461462", "url": "https://glygen.org/publication/PubMed/24461462", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666665", "url": "https://glygen.org/publication/PubMed/21666665", "database": "PubMed", "categories": [ "Other" ] }, { "id": "4M7E", "url": "https://www.rcsb.org/structure/4M7E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4M7E|B|545", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4M7E|A|545", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TGEIPKWIGRLENLAILKLS", "down_seq": "NSFSGNIPAELGDCRSLIWL", "glycosylation": [ { "glytoucan_ac": "G81315DD", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3RJ0&bu=0&command=select+.A:545;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn545", "evidence": [ { "id": "3RJ0", "database": "PDB", "url": "https://www.rcsb.org/structure/3RJ0" }, { "id": "4LSA", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSA" }, { "id": "4LSX", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSX" }, { "id": "9S8Z", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8Z" }, { "id": "3RIZ", "database": "PDB", "url": "https://www.rcsb.org/structure/3RIZ" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4M7E&bu=0&command=select+.B:545;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn545", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "21666666", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666666" }, { "id": "24461462", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/24461462" }, { "id": "21666665", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666665" }, { "id": "4M7E", "database": "PDB", "url": "https://www.rcsb.org/structure/4M7E" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.573.573", "start_pos": 573, "end_pos": 573, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] }, { "title": "Structural insight into brassinosteroid perception by BRI1.", "journal": "Nature", "date": "2011-06-12", "authors": "She Ji, Han Zhifu, Kim Tae-Wuk, Wang Jinjing, Cheng Wei, Chang Junbiao, Shi Shuai, Wang Jiawei, Yang Maojun, Wang Zhi-Yong, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21666666", "url": "https://glygen.org/publication/PubMed/21666666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "4LSA", "url": "https://www.rcsb.org/structure/4LSA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSX", "url": "https://www.rcsb.org/structure/4LSX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSA|A|573", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSX|A|573", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PAELGDCRSLIWLDLNTNLF", "down_seq": "GTIPAAMFKQSGKIAANFIA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4LSA&bu=0&command=select+.A:573;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn573", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "21666666", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/21666666" }, { "id": "4LSA", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSA" }, { "id": "4LSX", "database": "PDB", "url": "https://www.rcsb.org/structure/4LSX" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.636.636", "start_pos": 636, "end_pos": 636, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9S8V", "url": "https://www.rcsb.org/structure/9S8V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9S8V|A|636", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LEFQGIRSEQLNRLSTRNPC", "down_seq": "ITSRVYGGHTSPTFDNNGSM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9S8V&bu=0&command=select+.A:636;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn636", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "9S8V", "database": "PDB", "url": "https://www.rcsb.org/structure/9S8V" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "O22476-1.644.644", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O22476-1.653.653", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.653.653", "start_pos": 653, "end_pos": 653, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "6FIF", "url": "https://www.rcsb.org/structure/6FIF", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6FIF|A|653", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NPCNITSRVYGGHTSPTFDN", "down_seq": "GSMMFLDMSYNMLSGYIPKE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6FIF&bu=0&command=select+.A:653;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn653", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" }, { "id": "6FIF", "database": "PDB", "url": "https://www.rcsb.org/structure/6FIF" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O22476-1.636.636", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O22476-1.644.644", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O22476-1.662.662", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.737.737", "start_pos": 737, "end_pos": 737, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RIPQAMSALTMLTEIDLSNN", "down_seq": "LSGPIPEMGQFETFPPAKFL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn737", "evidence": [ { "id": "O22476", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22476#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "O22476-1.750.750", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.1031.1031", "start_pos": 1031, "end_pos": 1031, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction.", "journal": "Cell", "date": "1997-09-05", "authors": "Li J, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904" } ] }, { "title": "The Arabidopsis transthyretin-like protein is a potential substrate of BRASSINOSTEROID-INSENSITIVE 1.", "journal": "The Plant cell", "date": "2004-09", "authors": "Nam Kyoung Hee, Li Jianming", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "15319482", "url": "https://glygen.org/publication/PubMed/15319482" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15319482", "url": "https://glygen.org/publication/PubMed/15319482", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "KSSNVLLDENLEARVSDFGM", "down_seq": "RLMSAMDTHLSVSTLAGTPG", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "T", "comment": "In bri1-104; brassinosteroid-insensitive dwarf mutant and slightly reduced activity, but no effect on interaction with TTL.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904" }, { "database": "PubMed", "id": "15319482", "url": "https://glygen.org/publication/PubMed/15319482" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O22476-1.1035.1035", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.1039.1039", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1039.1039", "start_pos": 1039, "end_pos": 1039, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ENLEARVSDFGMARLMSAMD", "down_seq": "HLSVSTLAGTPGYVPPEYYQ", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes peptide phosphorylation, and to a lower level autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Thr1039" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O22476-1.1031.1031", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22476-1.1035.1035", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1042.1042", "start_pos": 1042, "end_pos": 1042, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EARVSDFGMARLMSAMDTHL", "down_seq": "VSTLAGTPGYVPPEYYQSFR", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes peptide phosphorylation, and to a lower level autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Ser1042" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O22476-1.1031.1031", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.1035.1035", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22476-1.1039.1039", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1044.1044", "start_pos": 1044, "end_pos": 1044, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RVSDFGMARLMSAMDTHLSV", "down_seq": "TLAGTPGYVPPEYYQSFRCS", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes peptide phosphorylation, and autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Ser1044" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O22476-1.1031.1031", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O22476-1.1035.1035", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O22476-1.1039.1039", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1045.1045", "start_pos": 1045, "end_pos": 1045, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VSDFGMARLMSAMDTHLSVS", "down_seq": "LAGTPGYVPPEYYQSFRCST", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes peptide phosphorylation, and autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Thr1045" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O22476-1.1031.1031", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O22476-1.1035.1035", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O22476-1.1039.1039", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1048.1048", "start_pos": 1048, "end_pos": 1048, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction.", "journal": "Cell", "date": "1997-09-05", "authors": "Li J, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904" } ] }, { "title": "The Arabidopsis transthyretin-like protein is a potential substrate of BRASSINOSTEROID-INSENSITIVE 1.", "journal": "The Plant cell", "date": "2004-09", "authors": "Nam Kyoung Hee, Li Jianming", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "15319482", "url": "https://glygen.org/publication/PubMed/15319482" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15319482", "url": "https://glygen.org/publication/PubMed/15319482", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "FGMARLMSAMDTHLSVSTLA", "down_seq": "TPGYVPPEYYQSFRCSTKGD", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "In bri1-115; brassinosteroid-insensitive dwarf mutant, reduced activity and no interaction with TTL.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904" }, { "database": "PubMed", "id": "15319482", "url": "https://glygen.org/publication/PubMed/15319482" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O22476-1.1031.1031", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O22476-1.1035.1035", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O22476-1.1039.1039", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1049.1049", "start_pos": 1049, "end_pos": 1049, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling.", "journal": "Developmental cell", "date": "2008-08", "authors": "Wang Xiaofeng, Kota Uma, He Kai, Blackburn Kevin, Li Jia, Goshe Michael B, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] }, { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GMARLMSAMDTHLSVSTLAG", "down_seq": "PGYVPPEYYQSFRCSTKGDV", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes peptide phosphorylation, and autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Loss of kinase activity and brassinosteroid signaling.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Thr1049" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22476-1.1031.1031", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O22476-1.1035.1035", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O22476-1.1039.1039", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1052.1052", "start_pos": 1052, "end_pos": 1052, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-01-13", "authors": "Oh Man-Ho, Wang Xiaofeng, Kota Uma, Goshe Michael B, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] }, { "title": "Tyrosine phosphorylation in brassinosteroid signaling.", "journal": "Plant signaling & behavior", "date": "2009-12", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "RLMSAMDTHLSVSTLAGTPG", "down_seq": "VPPEYYQSFRCSTKGDVYSY", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" }, { "database": "PubMed", "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242" } ], "site_lbl": "Tyr1052" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O22476-1.1035.1035", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O22476-1.1039.1039", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22476-1.1070.1070", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O22476-1.1072.1072", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1057.1057", "start_pos": 1057, "end_pos": 1057, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-01-13", "authors": "Oh Man-Ho, Wang Xiaofeng, Kota Uma, Goshe Michael B, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] }, { "title": "Tyrosine phosphorylation in brassinosteroid signaling.", "journal": "Plant signaling & behavior", "date": "2009-12", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MDTHLSVSTLAGTPGYVPPE", "down_seq": "YQSFRCSTKGDVYSYGVVLL", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" }, { "database": "PubMed", "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242" } ], "site_lbl": "Tyr1057" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22476-1.1039.1039", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22476-1.1070.1070", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O22476-1.1072.1072", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1058.1058", "start_pos": 1058, "end_pos": 1058, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-01-13", "authors": "Oh Man-Ho, Wang Xiaofeng, Kota Uma, Goshe Michael B, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DTHLSVSTLAGTPGYVPPEY", "down_seq": "QSFRCSTKGDVYSYGVVLLE", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O22476-1.1039.1039", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O22476-1.1070.1070", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O22476-1.1072.1072", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O22476-1.1078.1078", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1070.1070", "start_pos": 1070, "end_pos": 1070, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-01-13", "authors": "Oh Man-Ho, Wang Xiaofeng, Kota Uma, Goshe Michael B, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PGYVPPEYYQSFRCSTKGDV", "down_seq": "SYGVVLLELLTGKRPTDSPD", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22476-1.1072.1072", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.1078.1078", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1072.1072", "start_pos": 1072, "end_pos": 1072, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-01-13", "authors": "Oh Man-Ho, Wang Xiaofeng, Kota Uma, Goshe Michael B, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] }, { "title": "Tyrosine phosphorylation in brassinosteroid signaling.", "journal": "Plant signaling & behavior", "date": "2009-12", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242" } ] }, { "title": "Tyrosine Phosphorylation of the BRI1 Receptor Kinase Occurs via a Post-Translational Modification and is Activated by the Juxtamembrane Domain.", "journal": "Frontiers in plant science", "date": "2012", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "YVPPEYYQSFRCSTKGDVYS", "down_seq": "GVVLLELLTGKRPTDSPDFG", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" }, { "database": "PubMed", "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242" }, { "database": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" } ], "site_lbl": "Tyr1072" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22476-1.1070.1070", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22476-1.1078.1078", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1078.1078", "start_pos": 1078, "end_pos": 1078, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction.", "journal": "Cell", "date": "1997-09-05", "authors": "Li J, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904" } ] }, { "title": "The Arabidopsis transthyretin-like protein is a potential substrate of BRASSINOSTEROID-INSENSITIVE 1.", "journal": "The Plant cell", "date": "2004-09", "authors": "Nam Kyoung Hee, Li Jianming", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "15319482", "url": "https://glygen.org/publication/PubMed/15319482" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15319482", "url": "https://glygen.org/publication/PubMed/15319482", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "YQSFRCSTKGDVYSYGVVLL", "down_seq": "LLTGKRPTDSPDFGDNNLVG", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In bri1-101; brassinosteroid-insensitive dwarf mutant, lost activity and no interaction with TTL.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904" }, { "database": "PubMed", "id": "15319482", "url": "https://glygen.org/publication/PubMed/15319482" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "downstream", "id": "O22476-1.1060.1060", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O22476-1.1070.1070", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O22476-1.1072.1072", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1139.1139", "start_pos": 1139, "end_pos": 1139, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase.", "journal": "Plant physiology", "date": "2000-08", "authors": "Friedrichsen D M, Joazeiro C A, Li J, Hunter T, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "EDPALEIELLQHLKVAVACL", "down_seq": "DRAWRRPTMVQVMAMFKEIQ", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "In bri1-117; brassinosteroid-insensitive dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1166.1166", "start_pos": 1166, "end_pos": 1166, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling.", "journal": "Developmental cell", "date": "2008-08", "authors": "Wang Xiaofeng, Kota Uma, He Kai, Blackburn Kevin, Li Jia, Goshe Michael B, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTMVQVMAMFKEIQAGSGID", "down_seq": "QSTIRSIEDGGFSTIEMVDM", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "Increased kinase activity; when associated with D-1168; D-1172; D-1179 and D-1180.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "site_lbl": "Ser1166" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O22476-1.1162.1162", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22476-1.1168.1168", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22476-1.1169.1169", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22476-1.1172.1172", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22476-1.1179.1179", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22476-1.1179.1180", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O22476-1.1180.1180", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1168.1168", "start_pos": 1168, "end_pos": 1168, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling.", "journal": "Developmental cell", "date": "2008-08", "authors": "Wang Xiaofeng, Kota Uma, He Kai, Blackburn Kevin, Li Jia, Goshe Michael B, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] }, { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "title": "BRI1 is a critical component of a plasma-membrane receptor for plant steroids.", "journal": "Nature", "date": "2001", "authors": "Wang Z Y, Seto H, Fujioka S, Yoshida S, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" } ] }, { "title": "Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro.", "journal": "Plant physiology", "date": "2000-10", "authors": "Oh M H, Ray W K, Huber S C, Asara J M, Gage D A, Clouse S D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MVQVMAMFKEIQAGSGIDSQ", "down_seq": "TIRSIEDGGFSTIEMVDMSI", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Decreases peptide phosphorylation, but no effect on autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Increased kinase activity; when associated with D-1166; D-1172; D-1179 and D-1180.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" }, { "database": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ], "site_lbl": "Ser1168" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O22476-1.1162.1162", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22476-1.1166.1166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O22476-1.1169.1169", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22476-1.1172.1172", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22476-1.1179.1179", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22476-1.1179.1180", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O22476-1.1180.1180", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O22476-1.1187.1187", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1172.1172", "start_pos": 1172, "end_pos": 1172, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling.", "journal": "Developmental cell", "date": "2008-08", "authors": "Wang Xiaofeng, Kota Uma, He Kai, Blackburn Kevin, Li Jia, Goshe Michael B, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] }, { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAMFKEIQAGSGIDSQSTIR", "down_seq": "IEDGGFSTIEMVDMSIKEVP", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Decreases peptide phosphorylation, but no effect on autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Increased kinase activity; when associated with D-1166; D-1168; D-1179 and D-1180.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Ser1172" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O22476-1.1162.1162", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O22476-1.1166.1166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22476-1.1168.1168", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22476-1.1169.1169", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.1179.1179", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.1179.1180", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.1180.1180", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O22476-1.1187.1187", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1179.1179", "start_pos": 1179, "end_pos": 1179, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling.", "journal": "Developmental cell", "date": "2008-08", "authors": "Wang Xiaofeng, Kota Uma, He Kai, Blackburn Kevin, Li Jia, Goshe Michael B, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QAGSGIDSQSTIRSIEDGGF", "down_seq": "TIEMVDMSIKEVPEGKL", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "Increased kinase activity; when associated with D-1166; D-1168; D-1172 and D-1180.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Ser1179" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O22476-1.1162.1162", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O22476-1.1166.1166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O22476-1.1168.1168", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O22476-1.1169.1169", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.1172.1172", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 0, "direction": "upstream", "id": "O22476-1.1179.1180", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O22476-1.1180.1180", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.1187.1187", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1179.1180", "start_pos": 1179, "end_pos": 1180, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "ST", "start_aa": "S", "up_seq": "QAGSGIDSQSTIRSIEDGGF", "down_seq": "IEMVDMSIKEVPEGKL", "mutagenesis": [ { "sequence_org": "ST", "sequence_mut": "A", "comment": "Decreases peptide phosphorylation, but no effect on autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O22476-1.1162.1162", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O22476-1.1166.1166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O22476-1.1168.1168", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O22476-1.1169.1169", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.1172.1172", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 0, "direction": "downstream", "id": "O22476-1.1179.1179", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 0, "direction": "upstream", "id": "O22476-1.1180.1180", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.1187.1187", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1180.1180", "start_pos": 1180, "end_pos": 1180, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling.", "journal": "Developmental cell", "date": "2008-08", "authors": "Wang Xiaofeng, Kota Uma, He Kai, Blackburn Kevin, Li Jia, Goshe Michael B, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] }, { "title": "Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1.", "journal": "Developmental cell", "date": "2005-06", "authors": "Wang Xuelu, Li Xiaoqing, Meisenhelder Jill, Hunter Tony, Yoshida Shigeo, Asami Tadao, Chory Joanne", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "15935775", "url": "https://glygen.org/publication/PubMed/15935775" } ] }, { "title": "Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro.", "journal": "Plant physiology", "date": "2000-10", "authors": "Oh M H, Ray W K, Huber S C, Asara J M, Gage D A, Clouse S D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15935775", "url": "https://glygen.org/publication/PubMed/15935775", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AGSGIDSQSTIRSIEDGGFS", "down_seq": "IEMVDMSIKEVPEGKL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "D", "comment": "Increased kinase activity; when associated with D-1166; D-1168; D-1172 and D-1179.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "15935775", "url": "https://glygen.org/publication/PubMed/15935775" }, { "database": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ], "site_lbl": "Thr1180" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22476-1.1162.1162", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O22476-1.1166.1166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O22476-1.1168.1168", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O22476-1.1169.1169", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O22476-1.1172.1172", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O22476-1.1179.1179", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 0, "direction": "downstream", "id": "O22476-1.1179.1180", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.1187.1187", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1187.1187", "start_pos": 1187, "end_pos": 1187, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSTIRSIEDGGFSTIEMVDM", "down_seq": "IKEVPEGKL", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Decreases peptide phosphorylation, but no effect on autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Ser1187" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O22476-1.1168.1168", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "O22476-1.1169.1169", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O22476-1.1172.1172", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O22476-1.1179.1179", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.1179.1180", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.1180.1180", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.611.611", "start_pos": 611, "end_pos": 611, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction.", "journal": "Cell", "date": "1997-09-05", "authors": "Li J, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "FIAGKRYVYIKNDGMKKECH", "down_seq": "AGNLLEFQGIRSEQLNRLST", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In bri1-113; brassinosteroid-insensitive semi-dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "9298904", "url": "https://glygen.org/publication/PubMed/9298904" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O22476-1.613.613", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.613.613", "start_pos": 613, "end_pos": 613, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Brassinosteroid-insensitive dwarf mutants of Arabidopsis accumulate brassinosteroids.", "journal": "Plant physiology", "date": "1999-11", "authors": "Noguchi T, Fujioka S, Choe S, Takatsuto S, Yoshida S, Yuan H, Feldmann K A, Tax F E", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "AGKRYVYIKNDGMKKECHGA", "down_seq": "NLLEFQGIRSEQLNRLSTRN", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "S", "comment": "In bri1-7; brassinosteroid-insensitive semi-dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O22476-1.611.611", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.644.644", "start_pos": 644, "end_pos": 644, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Brassinosteroid-insensitive dwarf mutants of Arabidopsis accumulate brassinosteroids.", "journal": "Plant physiology", "date": "1999-11", "authors": "Noguchi T, Fujioka S, Choe S, Takatsuto S, Yoshida S, Yuan H, Feldmann K A, Tax F E", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "EQLNRLSTRNPCNITSRVYG", "down_seq": "HTSPTFDNNGSMMFLDMSYN", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "In bri1-6; brassinosteroid-insensitive semi-dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O22476-1.636.636", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O22476-1.653.653", "categories": [ "glycosylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22476-1.662.662", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.662.662", "start_pos": 662, "end_pos": 662, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Brassinosteroid-insensitive dwarf mutants of Arabidopsis accumulate brassinosteroids.", "journal": "Plant physiology", "date": "1999-11", "authors": "Noguchi T, Fujioka S, Choe S, Takatsuto S, Yoshida S, Yuan H, Feldmann K A, Tax F E", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YGGHTSPTFDNNGSMMFLDM", "down_seq": "YNMLSGYIPKEIGSMPYLFI", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "F", "comment": "In bri1-9; brassinosteroid-insensitive semi-dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22476-1.644.644", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O22476-1.653.653", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Brassinosteroid-insensitive dwarf mutants of Arabidopsis accumulate brassinosteroids.", "journal": "Plant physiology", "date": "1999-11", "authors": "Noguchi T, Fujioka S, Choe S, Takatsuto S, Yoshida S, Yuan H, Feldmann K A, Tax F E", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "KNLLPDWSSNKNPCTFDGVT", "down_seq": "RDDKVTSIDLSSKPLNVGFS", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "Y", "comment": "In bri1-5; brassinosteroid-insensitive semi-dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.750.750", "start_pos": 750, "end_pos": 750, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase.", "journal": "Plant physiology", "date": "2000-08", "authors": "Friedrichsen D M, Joazeiro C A, Li J, Hunter T, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EIDLSNNNLSGPIPEMGQFE", "down_seq": "FPPAKFLNNPGLCGYPLPRC", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "I", "comment": "In bri1-102; brassinosteroid-insensitive dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O22476-1.737.737", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.831.831", "start_pos": 831, "end_pos": 831, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-01-13", "authors": "Oh Man-Ho, Wang Xiaofeng, Kota Uma, Goshe Michael B, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] }, { "title": "Enhancing Arabidopsis leaf growth by engineering the BRASSINOSTEROID INSENSITIVE1 receptor kinase.", "journal": "Plant physiology", "date": "2011-09", "authors": "Oh Man-Ho, Sun Jindong, Oh Dong Ha, Zielinski Raymond E, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "21795582", "url": "https://glygen.org/publication/PubMed/21795582" } ] }, { "title": "Tyrosine phosphorylation in brassinosteroid signaling.", "journal": "Plant signaling & behavior", "date": "2009-12", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242" } ] }, { "title": "Tyrosine Phosphorylation of the BRI1 Receptor Kinase Occurs via a Post-Translational Modification and is Activated by the Juxtamembrane Domain.", "journal": "Frontiers in plant science", "date": "2012", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" } ] }, { "title": "Role of tyrosine autophosphorylation and methionine residues in BRI1 function in Arabidopsis thaliana.", "journal": "Genes & genomics", "date": "2022-07", "authors": "Choi Jae-Han, Oh Eun-Seok, Min Hansol, Chae Won Byoung, Mandadi Kranthi Kiran, Oh Man-Ho", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "35598220", "url": "https://glygen.org/publication/PubMed/35598220" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21795582", "url": "https://glygen.org/publication/PubMed/21795582", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071", "database": "PubMed", "categories": [ "Other" ] }, { "id": "35598220", "url": "https://glygen.org/publication/PubMed/35598220", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ILVGREMRKRRRKKEAELEM", "down_seq": "AEGHGNSGDRTANNTNWKLT", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "D", "comment": "No effect on kinase activity, flowering time or leaf size, but altered leaf shape.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] }, { "sequence_org": "Y", "sequence_mut": "E", "comment": "No effect on kinase activity, flowering time or leaf size, but altered leaf shape.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] }, { "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on kinase activity but altered flowering time and leaf size and shape.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O22476-1", "kinase_gene_name": "BRI1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" }, { "database": "PubMed", "id": "21795582", "url": "https://glygen.org/publication/PubMed/21795582" } ], "site_lbl": "Tyr831" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242" }, { "database": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" }, { "database": "PubMed", "id": "35598220", "url": "https://glygen.org/publication/PubMed/35598220" } ], "site_lbl": "Tyr831" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O22476-1.838.838", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22476-1.842.842", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O22476-1.846.846", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O22476-1.851.851", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.838.838", "start_pos": 838, "end_pos": 838, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling.", "journal": "Developmental cell", "date": "2008-08", "authors": "Wang Xiaofeng, Kota Uma, He Kai, Blackburn Kevin, Li Jia, Goshe Michael B, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] }, { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "title": "Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro.", "journal": "Plant physiology", "date": "2000-10", "authors": "Oh M H, Ray W K, Huber S C, Asara J M, Gage D A, Clouse S D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "BRI1 is a critical component of a plasma-membrane receptor for plant steroids.", "journal": "Nature", "date": "2001", "authors": "Wang Z Y, Seto H, Fujioka S, Yoshida S, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKRRRKKEAELEMYAEGHGN", "down_seq": "GDRTANNTNWKLTGVKEALS", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Decreases peptide phosphorylation, but no effect on autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Increased kinase activity; when associated with D-842; D-846 and D-858.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" }, { "database": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" } ], "site_lbl": "Ser838" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O22476-1.831.831", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22476-1.842.842", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.846.846", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22476-1.851.851", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O22476-1.858.858", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.842.842", "start_pos": 842, "end_pos": 842, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling.", "journal": "Developmental cell", "date": "2008-08", "authors": "Wang Xiaofeng, Kota Uma, He Kai, Blackburn Kevin, Li Jia, Goshe Michael B, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] }, { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "title": "Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro.", "journal": "Plant physiology", "date": "2000-10", "authors": "Oh M H, Ray W K, Huber S C, Asara J M, Gage D A, Clouse S D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RKKEAELEMYAEGHGNSGDR", "down_seq": "ANNTNWKLTGVKEALSINLA", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Decreases peptide phosphorylation, but no effect on autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Increased kinase activity; when associated with D-838; D-846 and D-858.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ], "site_lbl": "Thr842" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O22476-1.831.831", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22476-1.838.838", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22476-1.846.846", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O22476-1.851.851", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O22476-1.858.858", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.846.846", "start_pos": 846, "end_pos": 846, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling.", "journal": "Developmental cell", "date": "2008-08", "authors": "Wang Xiaofeng, Kota Uma, He Kai, Blackburn Kevin, Li Jia, Goshe Michael B, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] }, { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "title": "Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro.", "journal": "Plant physiology", "date": "2000-10", "authors": "Oh M H, Ray W K, Huber S C, Asara J M, Gage D A, Clouse S D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AELEMYAEGHGNSGDRTANN", "down_seq": "NWKLTGVKEALSINLAAFEK", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Decreases peptide phosphorylation, but no effect on autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Increased kinase activity; when associated with D-838; D-842 and D-858.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ], "site_lbl": "Thr846" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O22476-1.831.831", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O22476-1.838.838", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22476-1.842.842", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22476-1.851.851", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O22476-1.858.858", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.858.858", "start_pos": 858, "end_pos": 858, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling.", "journal": "Developmental cell", "date": "2008-08", "authors": "Wang Xiaofeng, Kota Uma, He Kai, Blackburn Kevin, Li Jia, Goshe Michael B, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" } ] }, { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "title": "Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro.", "journal": "Plant physiology", "date": "2000-10", "authors": "Oh M H, Ray W K, Huber S C, Asara J M, Gage D A, Clouse S D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] }, { "title": "Deactivation of the Arabidopsis BRASSINOSTEROID INSENSITIVE 1 (BRI1) receptor kinase by autophosphorylation within the glycine-rich loop.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012-01-03", "authors": "Oh Man-Ho, Wang Xiaofeng, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "22184234", "url": "https://glygen.org/publication/PubMed/22184234" } ] }, { "title": "BRI1 is a critical component of a plasma-membrane receptor for plant steroids.", "journal": "Nature", "date": "2001", "authors": "Wang Z Y, Seto H, Fujioka S, Yoshida S, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" } ] }, { "title": "Tyrosine Phosphorylation of the BRI1 Receptor Kinase Occurs via a Post-Translational Modification and is Activated by the Juxtamembrane Domain.", "journal": "Frontiers in plant science", "date": "2012", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562", "database": "PubMed", "categories": [ "Other" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "22184234", "url": "https://glygen.org/publication/PubMed/22184234", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGDRTANNTNWKLTGVKEAL", "down_seq": "INLAAFEKPLRKLTFADLLQ", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Decreases peptide phosphorylation, but no effect on autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Increased kinase activity; when associated with D-838; D-842 and D-846.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" }, { "database": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" }, { "database": "PubMed", "id": "18694562", "url": "https://glygen.org/publication/PubMed/18694562" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "PubMed", "id": "22184234", "url": "https://glygen.org/publication/PubMed/22184234" }, { "database": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" }, { "database": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" } ], "site_lbl": "Ser858" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O22476-1.838.838", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O22476-1.842.842", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O22476-1.846.846", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.851.851", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O22476-1.872.872", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.872.872", "start_pos": 872, "end_pos": 872, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "title": "Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro.", "journal": "Plant physiology", "date": "2000-10", "authors": "Oh M H, Ray W K, Huber S C, Asara J M, Gage D A, Clouse S D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] }, { "title": "Deactivation of the Arabidopsis BRASSINOSTEROID INSENSITIVE 1 (BRI1) receptor kinase by autophosphorylation within the glycine-rich loop.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012-01-03", "authors": "Oh Man-Ho, Wang Xiaofeng, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "22184234", "url": "https://glygen.org/publication/PubMed/22184234" } ] }, { "title": "BRI1 is a critical component of a plasma-membrane receptor for plant steroids.", "journal": "Nature", "date": "2001", "authors": "Wang Z Y, Seto H, Fujioka S, Yoshida S, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" } ] }, { "title": "Tyrosine Phosphorylation of the BRI1 Receptor Kinase Occurs via a Post-Translational Modification and is Activated by the Juxtamembrane Domain.", "journal": "Frontiers in plant science", "date": "2012", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" } ] }, { "title": "Functional analysis of the BRI1 receptor kinase by Thr-for-Ser substitution in a regulatory autophosphorylation site.", "journal": "Frontiers in plant science", "date": "2015", "authors": "Oh Man-Ho, Bender Kyle W, Kim Sang Y, Wu Xia, Lee Seulki, Nou Ill-Sup, Zielinski Raymond E, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "26284086", "url": "https://glygen.org/publication/PubMed/26284086" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22184234", "url": "https://glygen.org/publication/PubMed/22184234", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26284086", "url": "https://glygen.org/publication/PubMed/26284086", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GVKEALSINLAAFEKPLRKL", "down_seq": "FADLLQATNGFHNDSLIGSG", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "10-fold increase in peptide phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "22184234", "url": "https://glygen.org/publication/PubMed/22184234" }, { "database": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" }, { "database": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" }, { "database": "PubMed", "id": "26284086", "url": "https://glygen.org/publication/PubMed/26284086" } ], "site_lbl": "Thr872" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O22476-1.858.858", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.880.880", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O22476-1.887.887", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O22476-1.891.891", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.898.898", "start_pos": 898, "end_pos": 898, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-01-13", "authors": "Oh Man-Ho, Wang Xiaofeng, Kota Uma, Goshe Michael B, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QATNGFHNDSLIGSGGFGDV", "down_seq": "KAILKDGSAVAIKKLIHVSG", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22476-1.880.880", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O22476-1.887.887", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.891.891", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22476-1.909.909", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22476-1.911.911", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O22476-1.917.917", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.909.909", "start_pos": 909, "end_pos": 909, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase.", "journal": "Plant physiology", "date": "2000-08", "authors": "Friedrichsen D M, Joazeiro C A, Li J, Hunter T, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "IGSGGFGDVYKAILKDGSAV", "down_seq": "IKKLIHVSGQGDREFMAEME", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "T", "comment": "In bri1-1; brassinosteroid-insensitive dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22476-1.891.891", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O22476-1.898.898", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22476-1.911.911", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.917.917", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.911.911", "start_pos": 911, "end_pos": 911, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro.", "journal": "Plant physiology", "date": "2000-10", "authors": "Oh M H, Ray W K, Huber S C, Asara J M, Gage D A, Clouse S D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "SGGFGDVYKAILKDGSAVAI", "down_seq": "KLIHVSGQGDREFMAEMETI", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "Loss of kinase activity; dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O22476-1.891.891", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O22476-1.898.898", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22476-1.909.909", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22476-1.917.917", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.945.945", "start_pos": 945, "end_pos": 945, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-01-13", "authors": "Oh Man-Ho, Wang Xiaofeng, Kota Uma, Goshe Michael B, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MAEMETIGKIKHRNLVPLLG", "down_seq": "CKVGDERLLVYEFMKYGSLE", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "O22476-1.956.956", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O22476-1.961.961", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.956.956", "start_pos": 956, "end_pos": 956, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-01-13", "authors": "Oh Man-Ho, Wang Xiaofeng, Kota Uma, Goshe Michael B, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] }, { "title": "Tyrosine phosphorylation in brassinosteroid signaling.", "journal": "Plant signaling & behavior", "date": "2009-12", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242" } ] }, { "title": "Tyrosine Phosphorylation of the BRI1 Receptor Kinase Occurs via a Post-Translational Modification and is Activated by the Juxtamembrane Domain.", "journal": "Frontiers in plant science", "date": "2012", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HRNLVPLLGYCKVGDERLLV", "down_seq": "EFMKYGSLEDVLHDPKKAGV", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O22476-1", "kinase_gene_name": "BRI1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ], "site_lbl": "Tyr956" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "20514242", "url": "https://glygen.org/publication/PubMed/20514242" }, { "database": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" } ], "site_lbl": "Tyr956" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O22476-1.945.945", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22476-1.961.961", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.961.961", "start_pos": 961, "end_pos": 961, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-01-13", "authors": "Oh Man-Ho, Wang Xiaofeng, Kota Uma, Goshe Michael B, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PLLGYCKVGDERLLVYEFMK", "down_seq": "GSLEDVLHDPKKAGVKLNWS", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19124768", "url": "https://glygen.org/publication/PubMed/19124768" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O22476-1.945.945", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O22476-1.956.956", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O22476-1.981.981", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.983.983", "start_pos": 983, "end_pos": 983, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Brassinosteroid-insensitive dwarf mutants of Arabidopsis accumulate brassinosteroids.", "journal": "Plant physiology", "date": "1999-11", "authors": "Noguchi T, Fujioka S, Choe S, Takatsuto S, Yoshida S, Yuan H, Feldmann K A, Tax F E", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222" } ] }, { "title": "Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase.", "journal": "Plant physiology", "date": "2000-08", "authors": "Friedrichsen D M, Joazeiro C A, Li J, Hunter T, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "SLEDVLHDPKKAGVKLNWST", "down_seq": "RKIAIGSARGLAFLHHNCSP", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "N", "comment": "In bri1-8; brassinosteroid-insensitive dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "10557222", "url": "https://glygen.org/publication/PubMed/10557222" } ] }, { "sequence_org": "R", "sequence_mut": "Q", "comment": "In bri1-108; brassinosteroid-insensitive dwarf mutant.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "10938344", "url": "https://glygen.org/publication/PubMed/10938344" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O22476-1.981.981", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O22476-1.982.982", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22476-1.989.989", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.989.989", "start_pos": 989, "end_pos": 989, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Is kinase activity essential for biological functions of BRI1?", "journal": "Cell research", "date": "2008-04", "authors": "Xu Weihui, Huang Juan, Li Baohua, Li Jiayang, Wang Yonghong", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "reference": [ { "type": "PubMed", "id": "18332904", "url": "https://glygen.org/publication/PubMed/18332904" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18332904", "url": "https://glygen.org/publication/PubMed/18332904", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "HDPKKAGVKLNWSTRRKIAI", "down_seq": "SARGLAFLHHNCSPHIIHRD", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "I", "comment": "In bri1-301; impaired kinase activity and loss of autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "18332904", "url": "https://glygen.org/publication/PubMed/18332904" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O22476-1.981.981", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.982.982", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O22476-1.983.983", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1035.1035", "start_pos": 1035, "end_pos": 1035, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLLDENLEARVSDFGMARLM", "down_seq": "AMDTHLSVSTLAGTPGYVPP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Ser1035" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O22476-1.1031.1031", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22476-1.1039.1039", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.1060.1060", "start_pos": 1060, "end_pos": 1060, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HLSVSTLAGTPGYVPPEYYQ", "down_seq": "FRCSTKGDVYSYGVVLLELL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Ser1060" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22476-1.1042.1042", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O22476-1.1044.1044", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O22476-1.1045.1045", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O22476-1.1048.1048", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O22476-1.1049.1049", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O22476-1.1052.1052", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22476-1.1057.1057", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22476-1.1058.1058", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O22476-1.1070.1070", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O22476-1.1072.1072", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22476-1.1078.1078", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.1162.1162", "start_pos": 1162, "end_pos": 1162, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1.", "journal": "Developmental cell", "date": "2005-06", "authors": "Wang Xuelu, Li Xiaoqing, Meisenhelder Jill, Hunter Tony, Yoshida Shigeo, Asami Tadao, Chory Joanne", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "15935775", "url": "https://glygen.org/publication/PubMed/15935775" } ] } ], "crossref": [ { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15935775", "url": "https://glygen.org/publication/PubMed/15935775", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AWRRPTMVQVMAMFKEIQAG", "down_seq": "GIDSQSTIRSIEDGGFSTIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "15935775", "url": "https://glygen.org/publication/PubMed/15935775" } ], "site_lbl": "Ser1162" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O22476-1.1166.1166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22476-1.1168.1168", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.1169.1169", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O22476-1.1172.1172", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O22476-1.1179.1179", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O22476-1.1179.1180", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22476-1.1180.1180", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.1169.1169", "start_pos": 1169, "end_pos": 1169, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VQVMAMFKEIQAGSGIDSQS", "down_seq": "IRSIEDGGFSTIEMVDMSIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Thr1169" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O22476-1.1162.1162", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22476-1.1166.1166", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O22476-1.1168.1168", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22476-1.1172.1172", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O22476-1.1179.1179", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O22476-1.1179.1180", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22476-1.1180.1180", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22476-1.1187.1187", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.344.344", "start_pos": 344, "end_pos": 344, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Regulation of Arabidopsis brassinosteroid receptor BRI1 endocytosis and degradation by plant U-box PUB12/PUB13-mediated ubiquitination.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2018-02-20", "authors": "Zhou Jinggeng, Liu Derui, Wang Ping, Ma Xiyu, Lin Wenwei, Chen Sixue, Mishev Kiril, Lu Dongping, Kumar Rahul, Vanhoutte Isabelle, Meng Xiangzong, He Ping, Russinova Eugenia, Shan Libo", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "29432171", "url": "https://glygen.org/publication/PubMed/29432171" } ] } ], "crossref": [ { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29432171", "url": "https://glygen.org/publication/PubMed/29432171", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGNHFYGAVPPFFGSCSLLE", "down_seq": "LALSSNNFSGELPMDTLLKM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "29432171", "url": "https://glygen.org/publication/PubMed/29432171" } ], "site_lbl": "Ser344" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O22476-1.351.351", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.851.851", "start_pos": 851, "end_pos": 851, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YAEGHGNSGDRTANNTNWKL", "down_seq": "GVKEALSINLAAFEKPLRKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Thr851" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O22476-1.831.831", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O22476-1.838.838", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O22476-1.842.842", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O22476-1.846.846", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.858.858", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.880.880", "start_pos": 880, "end_pos": 880, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "title": "BRI1 is a critical component of a plasma-membrane receptor for plant steroids.", "journal": "Nature", "date": "2001", "authors": "Wang Z Y, Seto H, Fujioka S, Yoshida S, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NLAAFEKPLRKLTFADLLQA", "down_seq": "NGFHNDSLIGSGGFGDVYKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" } ], "site_lbl": "Thr880" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O22476-1.872.872", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.887.887", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22476-1.891.891", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22476-1.898.898", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.887.887", "start_pos": 887, "end_pos": 887, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLRKLTFADLLQATNGFHND", "down_seq": "LIGSGGFGDVYKAILKDGSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "site_lbl": "Ser887" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O22476-1.872.872", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22476-1.880.880", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22476-1.891.891", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22476-1.898.898", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.891.891", "start_pos": 891, "end_pos": 891, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Deactivation of the Arabidopsis BRASSINOSTEROID INSENSITIVE 1 (BRI1) receptor kinase by autophosphorylation within the glycine-rich loop.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012-01-03", "authors": "Oh Man-Ho, Wang Xiaofeng, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "22184234", "url": "https://glygen.org/publication/PubMed/22184234" } ] }, { "title": "Tyrosine Phosphorylation of the BRI1 Receptor Kinase Occurs via a Post-Translational Modification and is Activated by the Juxtamembrane Domain.", "journal": "Frontiers in plant science", "date": "2012", "authors": "Oh Man-Ho, Clouse Steven D, Huber Steven C", "evidence": [ { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" } ] }, { "title": "Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro.", "journal": "Plant physiology", "date": "2000-10", "authors": "Oh M H, Ray W K, Huber S C, Asara J M, Gage D A, Clouse S D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] } ], "crossref": [ { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22184234", "url": "https://glygen.org/publication/PubMed/22184234", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTFADLLQATNGFHNDSLIG", "down_seq": "GGFGDVYKAILKDGSAVAIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O22476-1", "kinase_gene_name": "BRI1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "22184234", "url": "https://glygen.org/publication/PubMed/22184234" } ], "site_lbl": "Ser891" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "22184234", "url": "https://glygen.org/publication/PubMed/22184234" }, { "database": "PubMed", "id": "22891071", "url": "https://glygen.org/publication/PubMed/22891071" }, { "database": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ], "site_lbl": "Ser891" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O22476-1.872.872", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O22476-1.880.880", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22476-1.887.887", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.898.898", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22476-1.909.909", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O22476-1.911.911", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.917.917", "start_pos": 917, "end_pos": 917, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VYKAILKDGSAVAIKKLIHV", "down_seq": "GQGDREFMAEMETIGKIKHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser917" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O22476-1.898.898", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O22476-1.909.909", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O22476-1.911.911", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22476-1.981.981", "start_pos": 981, "end_pos": 981, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YGSLEDVLHDPKKAGVKLNW", "down_seq": "TRRKIAIGSARGLAFLHHNC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "site_lbl": "Ser981" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O22476-1.961.961", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O22476-1.982.982", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22476-1.983.983", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O22476-1.989.989", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22476-1.982.982", "start_pos": 982, "end_pos": 982, "uniprot_canonical_ac": "O22476-1", "length": 1196, "uniprot_id": "BRI1_ARATH", "protein_name": "Protein BRASSINOSTEROID INSENSITIVE 1", "refseq_ac": "NP_195650", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BRI1", "gene_names_uniprotkb": "BRI1; F23K16.30", "gene_names_refseq": "ATBRI1; BIN1; BR INSENSITIVE 1; BRASSINOSTEROID INSENSITIVE 1; BRI1; CABBAGE 2; CBB2; DWARF 2; DWF2; F23K16.30; F23K16_30", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase.", "journal": "The Plant cell", "date": "2005-06", "authors": "Wang Xiaofeng, Goshe Michael B, Soderblom Erik J, Phinney Brett S, Kuchar Jason A, Li Jia, Asami Tadao, Yoshida Shigeo, Huber Steven C, Clouse Steven D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" } ] }, { "title": "BRI1 is a critical component of a plasma-membrane receptor for plant steroids.", "journal": "Nature", "date": "2001", "authors": "Wang Z Y, Seto H, Fujioka S, Yoshida S, Chory J", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476-1" } ], "reference": [ { "type": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" } ] }, { "title": "Recombinant brassinosteroid insensitive 1 receptor-like kinase autophosphorylates on serine and threonine residues and phosphorylates a conserved peptide motif in vitro.", "journal": "Plant physiology", "date": "2000-10", "authors": "Oh M H, Ray W K, Huber S C, Asara J M, Gage D A, Clouse S D", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" } ], "reference": [ { "type": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ] } ], "crossref": [ { "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476", "database": "PRO", "categories": [ "Other" ] }, { "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GSLEDVLHDPKKAGVKLNWS", "down_seq": "RRKIAIGSARGLAFLHHNCS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22476", "url": "https://www.uniprot.org/uniprotkb/O22476" }, { "database": "PubMed", "id": "15894717", "url": "https://glygen.org/publication/PubMed/15894717" }, { "database": "iPTMnet", "id": "O22476", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22476" }, { "database": "PRO", "id": "O22476", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O22476" }, { "database": "PubMed", "id": "11268216", "url": "https://glygen.org/publication/PubMed/11268216" }, { "database": "PubMed", "id": "11027724", "url": "https://glygen.org/publication/PubMed/11027724" } ], "site_lbl": "Thr982" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "154", "end_pos": "154" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "275", "end_pos": "275" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "401", "end_pos": "401" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "573", "end_pos": "573" }, { "start_pos": "636", "end_pos": "636" }, { "start_pos": "653", "end_pos": "653" }, { "start_pos": "737", "end_pos": "737" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1031", "end_pos": "1031" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1048", "end_pos": "1048" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1058", "end_pos": "1058" }, { "start_pos": "1070", "end_pos": "1070" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1078", "end_pos": "1078" }, { "start_pos": "1139", "end_pos": "1139" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1179", "end_pos": "1180" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "611", "end_pos": "611" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "644", "end_pos": "644" }, { "start_pos": "662", "end_pos": "662" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "898", "end_pos": "898" }, { "start_pos": "909", "end_pos": "909" }, { "start_pos": "911", "end_pos": "911" }, { "start_pos": "945", "end_pos": "945" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "961", "end_pos": "961" }, { "start_pos": "983", "end_pos": "983" }, { "start_pos": "989", "end_pos": "989" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1035", "end_pos": "1035" }, { "start_pos": "1039", "end_pos": "1039" }, { "start_pos": "1042", "end_pos": "1042" }, { "start_pos": "1044", "end_pos": "1044" }, { "start_pos": "1045", "end_pos": "1045" }, { "start_pos": "1049", "end_pos": "1049" }, { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1057", "end_pos": "1057" }, { "start_pos": "1060", "end_pos": "1060" }, { "start_pos": "1072", "end_pos": "1072" }, { "start_pos": "1162", "end_pos": "1162" }, { "start_pos": "1166", "end_pos": "1166" }, { "start_pos": "1168", "end_pos": "1168" }, { "start_pos": "1169", "end_pos": "1169" }, { "start_pos": "1172", "end_pos": "1172" }, { "start_pos": "1179", "end_pos": "1179" }, { "start_pos": "1180", "end_pos": "1180" }, { "start_pos": "1187", "end_pos": "1187" }, { "start_pos": "344", "end_pos": "344" }, { "start_pos": "831", "end_pos": "831" }, { "start_pos": "838", "end_pos": "838" }, { "start_pos": "842", "end_pos": "842" }, { "start_pos": "846", "end_pos": "846" }, { "start_pos": "851", "end_pos": "851" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "872", "end_pos": "872" }, { "start_pos": "880", "end_pos": "880" }, { "start_pos": "887", "end_pos": "887" }, { "start_pos": "891", "end_pos": "891" }, { "start_pos": "917", "end_pos": "917" }, { "start_pos": "956", "end_pos": "956" }, { "start_pos": "981", "end_pos": "981" }, { "start_pos": "982", "end_pos": "982" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O22476-1.981.981", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O22476-1.983.983", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22476-1.989.989", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.", "journal": "Plant physiology", "date": "2011-09", "authors": "Lamberti Giorgia, G\u00fcgel Irene L, Meurer J\u00f6rg, Soll J\u00fcrgen, Schwenkert Serena", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "21799034", "url": "https://glygen.org/publication/PubMed/21799034" } ] } ], "crossref": [ { "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21799034", "url": "https://glygen.org/publication/PubMed/21799034", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LDVAKGMSYLHQNNIIHRDL", "down_seq": "TANLLMDEHGLVKVADFGVA", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "PubMed", "id": "21799034", "url": "https://glygen.org/publication/PubMed/21799034" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.439.439", "start_pos": 439, "end_pos": 439, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.", "journal": "Plant physiology", "date": "2011-09", "authors": "Lamberti Giorgia, G\u00fcgel Irene L, Meurer J\u00f6rg, Soll J\u00fcrgen, Schwenkert Serena", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "21799034", "url": "https://glygen.org/publication/PubMed/21799034" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.", "journal": "Proteomics", "date": "2009-09", "authors": "Ito Jun, Taylor Nicolas L, Castleden Ian, Weckwerth Wolfram, Millar A Harvey, Heazlewood Joshua L", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21799034", "url": "https://glygen.org/publication/PubMed/21799034", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLVKVADFGVARVQIESGVM", "down_seq": "AETGTYRWMAPEVIEHKPYN", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of autophosphorylation and enzyme activation.", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "PubMed", "id": "21799034", "url": "https://glygen.org/publication/PubMed/21799034" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "21799034", "url": "https://glygen.org/publication/PubMed/21799034" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr439" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O22558-1.435.435", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22558-1.442.442", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22558-1.444.444", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22558-1.445.445", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MTIKDESESCGSRAVVA", "down_seq": "PSQENPRHYRMKLDVYSEVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser18" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O22558-1.2.2", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22558-1.20.20", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.20.20", "start_pos": 20, "end_pos": 20, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "", "down_seq": "QENPRHYRMKLDVYSEVLQR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser20" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22558-1.2.2", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22558-1.18.18", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "M", "down_seq": "IKDESESCGSRAVVASPSQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr2" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "O22558-1.18.18", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22558-1.20.20", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.304.304", "start_pos": 304, "end_pos": 304, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TQLKIEKKVASGSYGDLHRG", "down_seq": "YCSQEVAIKFLKPDRVNNEM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr304" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O22558-1.307.307", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.307.307", "start_pos": 307, "end_pos": 307, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KIEKKVASGSYGDLHRGTYC", "down_seq": "QEVAIKFLKPDRVNNEMLRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser307" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O22558-1.304.304", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.435.435", "start_pos": 435, "end_pos": 435, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDEHGLVKVADFGVARVQIE", "down_seq": "GVMTAETGTYRWMAPEVIEH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser435" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O22558-1.439.439", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22558-1.442.442", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O22558-1.444.444", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O22558-1.445.445", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.442.442", "start_pos": 442, "end_pos": 442, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KVADFGVARVQIESGVMTAE", "down_seq": "GTYRWMAPEVIEHKPYNHKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr442" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O22558-1.435.435", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22558-1.439.439", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22558-1.444.444", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22558-1.445.445", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.444.444", "start_pos": 444, "end_pos": 444, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ADFGVARVQIESGVMTAETG", "down_seq": "YRWMAPEVIEHKPYNHKADV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Thr444" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O22558-1.435.435", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O22558-1.439.439", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22558-1.442.442", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O22558-1.445.445", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22558-1.445.445", "start_pos": 445, "end_pos": 445, "uniprot_canonical_ac": "O22558-1", "length": 546, "uniprot_id": "STY8_ARATH", "protein_name": "Serine/threonine-protein kinase STY8", "refseq_ac": "NP_179361", "refseq_name": "ACT-like protein tyrosine kinase family protein", "gene_name": "STY8", "gene_names_uniprotkb": "STY8", "gene_names_refseq": "STY8; T17A5.2; T17A5_2; serine/threonine/tyrosine kinase 8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O22558", "url": "https://www.uniprot.org/uniprotkb/O22558" }, { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DFGVARVQIESGVMTAETGT", "down_seq": "RWMAPEVIEHKPYNHKADVF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22558", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22558" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Tyr445" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "409", "end_pos": "409" }, { "start_pos": "439", "end_pos": "439" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "18", "end_pos": "18" }, { "start_pos": "20", "end_pos": "20" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "304", "end_pos": "304" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "439", "end_pos": "439" }, { "start_pos": "442", "end_pos": "442" }, { "start_pos": "444", "end_pos": "444" }, { "start_pos": "445", "end_pos": "445" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O22558-1.435.435", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O22558-1.439.439", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22558-1.442.442", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O22558-1.444.444", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-alpha-acetylation features.", "journal": "Molecular & cellular proteomics : MCP", "date": "2012", "authors": "Bienvenut WV, Sumpton D, Martinez A, Lilla S, Espagne C, Meinnel T, Giglione C", "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "reference": [ { "type": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] } ], "crossref": [ { "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "AVLGAANSRPDLILTGHQDN", "down_seq": "EFALAMCPTEPFVLSGGKDK", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "V", "comment": "In allele fve-1; loss of function allele that causes increased levels of FLC and late flowering.", "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" }, { "database": "PubMed", "id": "22223895", "url": "https://glygen.org/publication/PubMed/22223895" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O22607-1.241.241", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Regulation of flowering time by FVE, a retinoblastoma-associated protein.", "journal": "Nature genetics", "date": "2004-02", "authors": "Aus\u00edn Israel, Alonso-Blanco Carlos, Jarillo Jos\u00e9 A, Ruiz-Garc\u00eda Leonor, Mart\u00ednez-Zapater Jos\u00e9 M", "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "reference": [ { "type": "PubMed", "id": "14745447", "url": "https://glygen.org/publication/PubMed/14745447" } ] } ], "crossref": [ { "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14745447", "url": "https://glygen.org/publication/PubMed/14745447", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "NAEFALAMCPTEPFVLSGGK", "down_seq": "KSVVLWSIQDHITTIGTDSK", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "In allele fve-2; loss of function allele that causes increased levels of FLC and late flowering.", "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" }, { "database": "PubMed", "id": "14745447", "url": "https://glygen.org/publication/PubMed/14745447" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O22607-1.222.222", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.10.10", "start_pos": 10, "end_pos": 10, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MESDEAAAV", "down_seq": "PQATTPSGGTGASGPKKRGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser10" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O22607-1.3.3", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VVKPRVAAAEHISQFNEEAR", "down_seq": "PFVKKYKTIIHPGEVNRIRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser152" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSKSSGSIIKQTGEGTDKNE", "down_seq": "PTVGPRGVYHGHEDTVEDVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser279" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGTGASGPKKRGRKPKTKED", "down_seq": "QTPSSQQQSDVKMKESGKKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser38" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O22607-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22607-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22607-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O22607-1.47.47", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ME", "down_seq": "DEAAAVSPQATTPSGGTGAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser3" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O22607-1.10.10", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.40.40", "start_pos": 40, "end_pos": 40, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TGASGPKKRGRKPKTKEDSQ", "down_seq": "PSSQQQSDVKMKESGKKTQQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Thr40" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O22607-1.38.38", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22607-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O22607-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O22607-1.47.47", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.429.429", "start_pos": 429, "end_pos": 429, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLLNIWDYDRVSKKSDRAAK", "down_seq": "PAGLFFQHAGHRDKVVDFHW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser429" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASGPKKRGRKPKTKEDSQTP", "down_seq": "SQQQSDVKMKESGKKTQQSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser42" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O22607-1.38.38", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22607-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O22607-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22607-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O22607-1.61.61", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGPKKRGRKPKTKEDSQTPS", "down_seq": "QQQSDVKMKESGKKTQQSPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser43" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O22607-1.38.38", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O22607-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O22607-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22607-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O22607-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O22607-1.63.63", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRGRKPKTKEDSQTPSSQQQ", "down_seq": "DVKMKESGKKTQQSPSVDEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O22607-1.38.38", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O22607-1.40.40", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O22607-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22607-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O22607-1.61.61", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O22607-1.63.63", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.61.61", "start_pos": 61, "end_pos": 61, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSSQQQSDVKMKESGKKTQQ", "down_seq": "PSVDEKYSQWKGLVPILYDW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser61" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O22607-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "O22607-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O22607-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22607-1.63.63", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22607-1.63.63", "start_pos": 63, "end_pos": 63, "uniprot_canonical_ac": "O22607-1", "length": 507, "uniprot_id": "MSI4_ARATH", "protein_name": "WD-40 repeat-containing protein MSI4", "refseq_ac": "NP_565456", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "MSI4", "gene_names_uniprotkb": "MSI4; ACG1; F3P11.12; FVE", "gene_names_refseq": "ACG1; ATMSI4; F3P11.12; F3P11_12; FVE; MSI4; MULTICOPY SUPPRESSOR OF IRA1 4; NFC04; NFC4; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C; WD-40 REPEAT PROTEIN MSI4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22607", "url": "https://www.uniprot.org/uniprotkb/O22607" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SQQQSDVKMKESGKKTQQSP", "down_seq": "VDEKYSQWKGLVPILYDWLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22607", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22607" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser63" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "222", "end_pos": "222" }, { "start_pos": "241", "end_pos": "241" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "10", "end_pos": "10" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "40", "end_pos": "40" }, { "start_pos": "429", "end_pos": "429" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "61", "end_pos": "61" }, { "start_pos": "63", "end_pos": "63" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O22607-1.43.43", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O22607-1.47.47", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22607-1.61.61", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22609-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "O22609-1", "length": 439, "uniprot_id": "DEGP1_ARATH", "protein_name": "Protease Do-like 1, chloroplastic", "refseq_ac": "NP_001325789", "refseq_name": "DegP protease 1", "gene_name": "DEGP1", "gene_names_uniprotkb": "DEGP1; DEG1; DEGP; K16N12.18", "gene_names_refseq": "DEG1; DEGP1; Deg1; DegP protease 1; degradation of periplasmic proteins 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22609", "url": "https://www.uniprot.org/uniprotkb/O22609" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "High light stimulates Deg1-dependent cleavage of the minor LHCII antenna proteins CP26 and CP29 and the PsbS protein in Arabidopsis thaliana.", "journal": "Planta", "date": "2012-02", "authors": "Zienkiewicz Maksymilian, Ferenc Aleksandra, Wasilewska Wioleta, Romanowska El\u017cbieta", "evidence": [ { "database": "UniProtKB", "id": "O22609", "url": "https://www.uniprot.org/uniprotkb/O22609" } ], "reference": [ { "type": "PubMed", "id": "21877139", "url": "https://glygen.org/publication/PubMed/21877139" } ] } ], "crossref": [ { "id": "O22609", "url": "https://www.uniprot.org/uniprotkb/O22609", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21877139", "url": "https://glygen.org/publication/PubMed/21877139", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATGRPIQDVIQTDAAINPGN", "down_seq": "GGPLLDSSGTLIGINTAIYS", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "G", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "O22609", "url": "https://www.uniprot.org/uniprotkb/O22609" }, { "database": "PubMed", "id": "21877139", "url": "https://glygen.org/publication/PubMed/21877139" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "400", "end_pos": "400" }, { "start_pos": "403", "end_pos": "403" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22609-1.400.400", "start_pos": 400, "end_pos": 400, "uniprot_canonical_ac": "O22609-1", "length": 439, "uniprot_id": "DEGP1_ARATH", "protein_name": "Protease Do-like 1, chloroplastic", "refseq_ac": "NP_001325789", "refseq_name": "DegP protease 1", "gene_name": "DEGP1", "gene_names_uniprotkb": "DEGP1; DEG1; DEGP; K16N12.18", "gene_names_refseq": "DEG1; DEGP1; Deg1; DegP protease 1; degradation of periplasmic proteins 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22609", "url": "https://www.uniprot.org/uniprotkb/O22609" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22609", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22609", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRLVLGDIITSVNGTKVSNG", "down_seq": "DLYRILDQCKVGDEVTVEVL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22609", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22609" } ], "site_lbl": "Ser400" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "400", "end_pos": "400" }, { "start_pos": "403", "end_pos": "403" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O22609-1.403.403", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22609-1.403.403", "start_pos": 403, "end_pos": 403, "uniprot_canonical_ac": "O22609-1", "length": 439, "uniprot_id": "DEGP1_ARATH", "protein_name": "Protease Do-like 1, chloroplastic", "refseq_ac": "NP_001325789", "refseq_name": "DegP protease 1", "gene_name": "DEGP1", "gene_names_uniprotkb": "DEGP1; DEG1; DEGP; K16N12.18", "gene_names_refseq": "DEG1; DEGP1; Deg1; DegP protease 1; degradation of periplasmic proteins 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22609", "url": "https://www.uniprot.org/uniprotkb/O22609" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22609", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22609", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VLGDIITSVNGTKVSNGSDL", "down_seq": "RILDQCKVGDEVTVEVLRGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22609", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22609" } ], "site_lbl": "Tyr403" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "400", "end_pos": "400" }, { "start_pos": "403", "end_pos": "403" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O22609-1.400.400", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22666-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "O22666-1", "length": 362, "uniprot_id": "RGP3_ARATH", "protein_name": "UDP-arabinopyranose mutase 3", "refseq_ac": "NP_187502", "refseq_name": "reversibly glycosylated polypeptide 3", "gene_name": "RGP3", "gene_names_uniprotkb": "RGP3; T16O11.16", "gene_names_refseq": "RGP3; RGP; reversibly glycosylated polypeptide 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22666", "url": "https://www.uniprot.org/uniprotkb/O22666" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAQLYSSVKP", "down_seq": "PMLKDELDIVIPTIRNLDFL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr11", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22715-1.156.156", "start_pos": 156, "end_pos": 156, "uniprot_canonical_ac": "O22715-1", "length": 428, "uniprot_id": "AP1M2_ARATH", "protein_name": "AP-1 complex subunit mu-2", "refseq_ac": "NP_176277", "refseq_name": "Clathrin adaptor complexes medium subunit family protein", "gene_name": "AP1M2", "gene_names_uniprotkb": "AP1M2; F8A5.29; HAP13", "gene_names_refseq": "AP1M2; F8A5.29; F8A5_29; HAP13; HAPLESS 13; adaptor protein-1 mu-adaptin 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22715", "url": "https://www.uniprot.org/uniprotkb/O22715" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22715", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22715" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22715", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22715" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22715", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22715", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EFIKTDAYRMEVTQRPPMAV", "down_seq": "NAVSWRSEGIQYKKNEVFLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22715", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22715" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr156" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "156", "end_pos": "156" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22752-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "O22752-1", "length": 542, "uniprot_id": "MLO7_ARATH", "protein_name": "MLO-like protein 7", "refseq_ac": "NP_179335", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO7", "gene_names_uniprotkb": "MLO7; F5J6.19; NTA", "gene_names_refseq": "ATMLO7; F5J6.19; F5J6_19; MILDEW RESISTANCE LOCUS O 7; MLO7; NORTIA; NTA", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22752", "url": "https://www.uniprot.org/uniprotkb/O22752" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TLSNDYEFSIDHSRLRLTHE", "down_seq": "SFVREHTSFWTTTPFFFYVG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Thr220" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "490", "end_pos": "490" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O22752-1.221.221", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22752-1.221.221", "start_pos": 221, "end_pos": 221, "uniprot_canonical_ac": "O22752-1", "length": 542, "uniprot_id": "MLO7_ARATH", "protein_name": "MLO-like protein 7", "refseq_ac": "NP_179335", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO7", "gene_names_uniprotkb": "MLO7; F5J6.19; NTA", "gene_names_refseq": "ATMLO7; F5J6.19; F5J6_19; MILDEW RESISTANCE LOCUS O 7; MLO7; NORTIA; NTA", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22752", "url": "https://www.uniprot.org/uniprotkb/O22752" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSNDYEFSIDHSRLRLTHET", "down_seq": "FVREHTSFWTTTPFFFYVGC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser221" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "490", "end_pos": "490" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O22752-1.220.220", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22752-1.486.486", "start_pos": 486, "end_pos": 486, "uniprot_canonical_ac": "O22752-1", "length": 542, "uniprot_id": "MLO7_ARATH", "protein_name": "MLO-like protein 7", "refseq_ac": "NP_179335", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO7", "gene_names_uniprotkb": "MLO7; F5J6.19; NTA", "gene_names_refseq": "ATMLO7; F5J6.19; F5J6_19; MILDEW RESISTANCE LOCUS O 7; MLO7; NORTIA; NTA", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22752", "url": "https://www.uniprot.org/uniprotkb/O22752" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KGKARKLPSKTLGVSESFSL", "down_seq": "SSSSATTLHRSKTTGHSSNI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser486" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "490", "end_pos": "490" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O22752-1.490.490", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22752-1.490.490", "start_pos": 490, "end_pos": 490, "uniprot_canonical_ac": "O22752-1", "length": 542, "uniprot_id": "MLO7_ARATH", "protein_name": "MLO-like protein 7", "refseq_ac": "NP_179335", "refseq_name": "Seven transmembrane MLO family protein", "gene_name": "MLO7", "gene_names_uniprotkb": "MLO7; F5J6.19; NTA", "gene_names_refseq": "ATMLO7; F5J6.19; F5J6_19; MILDEW RESISTANCE LOCUS O 7; MLO7; NORTIA; NTA", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22752", "url": "https://www.uniprot.org/uniprotkb/O22752" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKLPSKTLGVSESFSLSSSS", "down_seq": "ATTLHRSKTTGHSSNIIYYK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22752", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22752" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser490" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "486", "end_pos": "486" }, { "start_pos": "490", "end_pos": "490" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O22752-1.486.486", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22755-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "O22755-1", "length": 185, "uniprot_id": "ATL44_ARATH", "protein_name": "Probable E3 ubiquitin-protein ligase ATL44", "refseq_ac": "NP_179337", "refseq_name": "RING-H2 finger A3A", "gene_name": "ATL44", "gene_names_uniprotkb": "ATL44; F5J6.22; MJB20; RHA3A", "gene_names_refseq": "F5J6.22; RHA3A; RING-H2 FINGER PROTEIN RHA3A; RING-H2 finger A3A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22755", "url": "https://www.uniprot.org/uniprotkb/O22755" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O22755", "url": "https://www.uniprot.org/uniprotkb/O22755" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O22755", "url": "https://www.uniprot.org/uniprotkb/O22755", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "TAAESTSGAAAEEGDSTECA", "down_seq": "CLTDFADGEEIRVLPLCGHS", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "A", "comment": "Impaired E3 ubiquitin ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "O22755", "url": "https://www.uniprot.org/uniprotkb/O22755" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22768-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "O22768-1", "length": 310, "uniprot_id": "UNE12_ARATH", "protein_name": "Transcription factor UNE12", "refseq_ac": "NP_001031577", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "UNE12", "gene_names_uniprotkb": "UNE12; BHLH59; EN93; T10P11.13", "gene_names_refseq": "T10P11.13; T10P11_13; UNE12; unfertilized embryo sac 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22768", "url": "https://www.uniprot.org/uniprotkb/O22768" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "UNFERTILIZED EMBRYO SAC 12 phosphorylation plays a crucial role in conferring salt tolerance.", "journal": "Plant physiology", "date": "2022-02-04", "authors": "He Zihang, Wang Zhibo, Nie Xianguang, Qu Ming, Zhao Huimin, Ji Xiaoyu, Wang Yucheng", "evidence": [ { "database": "iPTMnet", "id": "O22768", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22768" } ], "reference": [ { "type": "PubMed", "id": "34904673", "url": "https://glygen.org/publication/PubMed/34904673" } ] } ], "crossref": [ { "id": "O22768", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22768", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "34904673", "url": "https://glygen.org/publication/PubMed/34904673", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QGKGPGFLRPEGGHGSGKRF", "down_seq": "DDVVDNRCSSMKPVFHGQPM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22768", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22768" }, { "database": "PubMed", "id": "34904673", "url": "https://glygen.org/publication/PubMed/34904673" } ], "site_lbl": "Ser108" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22775-1.432.432", "start_pos": 432, "end_pos": 432, "uniprot_canonical_ac": "O22775-1", "length": 461, "uniprot_id": "XXT2_ARATH", "protein_name": "Xyloglucan 6-xylosyltransferase 2", "refseq_ac": "NP_567241", "refseq_name": "UDP-xylosyltransferase 2", "gene_name": "XXT2", "gene_names_uniprotkb": "XXT2; GT2; GTL5; T10P11.20; T14P8.23; XT2", "gene_names_refseq": "ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2; ATXT2; AtXXT2; T10P11.20; UDP-xylosyltransferase 2; XT2; XXT2; XYG XYLOSYLTRANSFERASE 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22775", "url": "https://www.uniprot.org/uniprotkb/O22775" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22775", "url": "https://www.uniprot.org/uniprotkb/O22775", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LQIYGFTHKSLASRKVKRVR", "down_seq": "ETSNPLEMKDELGLLHPAFK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn432", "evidence": [ { "id": "O22775", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22775#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "432", "end_pos": "432" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22781-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "O22781-1", "length": 651, "uniprot_id": "SUVH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase family member SUVH2", "refseq_ac": "NP_001318341", "refseq_name": "SU(VAR)3-9 homolog 2", "gene_name": "SUVH2", "gene_names_uniprotkb": "SUVH2; F4P9.6; SDG3; SET3", "gene_names_refseq": "ATSUVH2; F4P9.6; F4P9_6; SDG3; SET DOMAIN-CONTAINING PROTEIN 3; SU(VAR)3-9 homolog 2; SUVH2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.", "journal": "The EMBO journal", "date": "2005-04-06", "authors": "Naumann Kathrin, Fischer Andreas, Hofmann Ingo, Krauss Veiko, Phalke Sameer, Irmler Kristina, Hause Gerd, Aurich Anne-Cathleen, Dorn Rainer, Jenuwein Thomas, Reuter Gunter", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "reference": [ { "type": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "crossref": [ { "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "VVSPKFERPRELARIAILGH", "down_seq": "QRKELRQVMKRTRMTYESLR", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "D", "comment": "In 5-1; ectopic nuclear localization.", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" }, { "database": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "645", "end_pos": "645" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22781-1.351.351", "start_pos": 351, "end_pos": 351, "uniprot_canonical_ac": "O22781-1", "length": 651, "uniprot_id": "SUVH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase family member SUVH2", "refseq_ac": "NP_001318341", "refseq_name": "SU(VAR)3-9 homolog 2", "gene_name": "SUVH2", "gene_names_uniprotkb": "SUVH2; F4P9.6; SDG3; SET3", "gene_names_refseq": "ATSUVH2; F4P9.6; F4P9_6; SDG3; SET DOMAIN-CONTAINING PROTEIN 3; SU(VAR)3-9 homolog 2; SUVH2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.", "journal": "The EMBO journal", "date": "2005-04-06", "authors": "Naumann Kathrin, Fischer Andreas, Hofmann Ingo, Krauss Veiko, Phalke Sameer, Irmler Kristina, Hause Gerd, Aurich Anne-Cathleen, Dorn Rainer, Jenuwein Thomas, Reuter Gunter", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "reference": [ { "type": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "crossref": [ { "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "YKIVDWWFAVGKSGFGVFKF", "down_seq": "LVRIEGQPMMGSAVMRFAQT", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "K", "comment": "In 5-2; loss of 5-methylcytosine, H3K9 dimethylation and H4K20 monomethylation.", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" }, { "database": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "645", "end_pos": "645" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22781-1.385.385", "start_pos": 385, "end_pos": 385, "uniprot_canonical_ac": "O22781-1", "length": 651, "uniprot_id": "SUVH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase family member SUVH2", "refseq_ac": "NP_001318341", "refseq_name": "SU(VAR)3-9 homolog 2", "gene_name": "SUVH2", "gene_names_uniprotkb": "SUVH2; F4P9.6; SDG3; SET3", "gene_names_refseq": "ATSUVH2; F4P9.6; F4P9_6; SDG3; SET DOMAIN-CONTAINING PROTEIN 3; SU(VAR)3-9 homolog 2; SUVH2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.", "journal": "The EMBO journal", "date": "2005-04-06", "authors": "Naumann Kathrin, Fischer Andreas, Hofmann Ingo, Krauss Veiko, Phalke Sameer, Irmler Kristina, Hause Gerd, Aurich Anne-Cathleen, Dorn Rainer, Jenuwein Thomas, Reuter Gunter", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "reference": [ { "type": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "crossref": [ { "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "VMRFAQTLRNKPSMVRPTGY", "down_seq": "SFDLSNKKENVPVFLYNDVD", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "In 5-3; loss of 5-methylcytosine, H3K9 dimethylation and H4K20 monomethylation.", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" }, { "database": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "645", "end_pos": "645" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22781-1.411.411", "start_pos": 411, "end_pos": 411, "uniprot_canonical_ac": "O22781-1", "length": 651, "uniprot_id": "SUVH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase family member SUVH2", "refseq_ac": "NP_001318341", "refseq_name": "SU(VAR)3-9 homolog 2", "gene_name": "SUVH2", "gene_names_uniprotkb": "SUVH2; F4P9.6; SDG3; SET3", "gene_names_refseq": "ATSUVH2; F4P9.6; F4P9_6; SDG3; SET DOMAIN-CONTAINING PROTEIN 3; SU(VAR)3-9 homolog 2; SUVH2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.", "journal": "The EMBO journal", "date": "2005-04-06", "authors": "Naumann Kathrin, Fischer Andreas, Hofmann Ingo, Krauss Veiko, Phalke Sameer, Irmler Kristina, Hause Gerd, Aurich Anne-Cathleen, Dorn Rainer, Jenuwein Thomas, Reuter Gunter", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "reference": [ { "type": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "crossref": [ { "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "NKKENVPVFLYNDVDGDQEP", "down_seq": "HYEYIAKAVFPPGIFGQGGI", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "I", "comment": "In 5-4; loss of H3K9 and H4K20 methylation.", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" }, { "database": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "645", "end_pos": "645" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22781-1.584.584", "start_pos": 584, "end_pos": 584, "uniprot_canonical_ac": "O22781-1", "length": 651, "uniprot_id": "SUVH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase family member SUVH2", "refseq_ac": "NP_001318341", "refseq_name": "SU(VAR)3-9 homolog 2", "gene_name": "SUVH2", "gene_names_uniprotkb": "SUVH2; F4P9.6; SDG3; SET3", "gene_names_refseq": "ATSUVH2; F4P9.6; F4P9_6; SDG3; SET DOMAIN-CONTAINING PROTEIN 3; SU(VAR)3-9 homolog 2; SUVH2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.", "journal": "The EMBO journal", "date": "2005-04-06", "authors": "Naumann Kathrin, Fischer Andreas, Hofmann Ingo, Krauss Veiko, Phalke Sameer, Irmler Kristina, Hause Gerd, Aurich Anne-Cathleen, Dorn Rainer, Jenuwein Thomas, Reuter Gunter", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "reference": [ { "type": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "crossref": [ { "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "YPDFVRPNYPSLPPLDFSMD", "down_seq": "SRMRNVACYISHSKEPNVMV", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "G", "comment": "In 5-5; loss of H3K9 and H4K20 methylation.", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" }, { "database": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "645", "end_pos": "645" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22781-1.620.620", "start_pos": 620, "end_pos": 620, "uniprot_canonical_ac": "O22781-1", "length": 651, "uniprot_id": "SUVH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase family member SUVH2", "refseq_ac": "NP_001318341", "refseq_name": "SU(VAR)3-9 homolog 2", "gene_name": "SUVH2", "gene_names_uniprotkb": "SUVH2; F4P9.6; SDG3; SET3", "gene_names_refseq": "ATSUVH2; F4P9.6; F4P9_6; SDG3; SET DOMAIN-CONTAINING PROTEIN 3; SU(VAR)3-9 homolog 2; SUVH2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.", "journal": "The EMBO journal", "date": "2005-04-06", "authors": "Naumann Kathrin, Fischer Andreas, Hofmann Ingo, Krauss Veiko, Phalke Sameer, Irmler Kristina, Hause Gerd, Aurich Anne-Cathleen, Dorn Rainer, Jenuwein Thomas, Reuter Gunter", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "reference": [ { "type": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "crossref": [ { "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "PNVMVQFVLHDHNHLMFPRV", "down_seq": "LFALENISPLAELSLDYGLA", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "T", "comment": "In 5-6; loss of H3K9 and H4K20 methylation; when associated with T-630.", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" }, { "database": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "645", "end_pos": "645" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "O22781-1.630.630", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22781-1.630.630", "start_pos": 630, "end_pos": 630, "uniprot_canonical_ac": "O22781-1", "length": 651, "uniprot_id": "SUVH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase family member SUVH2", "refseq_ac": "NP_001318341", "refseq_name": "SU(VAR)3-9 homolog 2", "gene_name": "SUVH2", "gene_names_uniprotkb": "SUVH2; F4P9.6; SDG3; SET3", "gene_names_refseq": "ATSUVH2; F4P9.6; F4P9_6; SDG3; SET DOMAIN-CONTAINING PROTEIN 3; SU(VAR)3-9 homolog 2; SUVH2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.", "journal": "The EMBO journal", "date": "2005-04-06", "authors": "Naumann Kathrin, Fischer Andreas, Hofmann Ingo, Krauss Veiko, Phalke Sameer, Irmler Kristina, Hause Gerd, Aurich Anne-Cathleen, Dorn Rainer, Jenuwein Thomas, Reuter Gunter", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "reference": [ { "type": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "crossref": [ { "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "DHNHLMFPRVMLFALENISP", "down_seq": "AELSLDYGLADEVNGKLAIC", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "V", "comment": "In 5-6; loss of H3K9 and H4K20 methylation; when associated with V-620.", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" }, { "database": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "645", "end_pos": "645" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O22781-1.620.620", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O22781-1.645.645", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22781-1.645.645", "start_pos": 645, "end_pos": 645, "uniprot_canonical_ac": "O22781-1", "length": 651, "uniprot_id": "SUVH2_ARATH", "protein_name": "Histone-lysine N-methyltransferase family member SUVH2", "refseq_ac": "NP_001318341", "refseq_name": "SU(VAR)3-9 homolog 2", "gene_name": "SUVH2", "gene_names_uniprotkb": "SUVH2; F4P9.6; SDG3; SET3", "gene_names_refseq": "ATSUVH2; F4P9.6; F4P9_6; SDG3; SET DOMAIN-CONTAINING PROTEIN 3; SU(VAR)3-9 homolog 2; SUVH2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.", "journal": "The EMBO journal", "date": "2005-04-06", "authors": "Naumann Kathrin, Fischer Andreas, Hofmann Ingo, Krauss Veiko, Phalke Sameer, Irmler Kristina, Hause Gerd, Aurich Anne-Cathleen, Dorn Rainer, Jenuwein Thomas, Reuter Gunter", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" } ], "reference": [ { "type": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "crossref": [ { "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "ENISPLAELSLDYGLADEVN", "down_seq": "KLAICN", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "S", "comment": "In 5-7; loss of H3K9 and H4K20 methylation.", "evidence": [ { "database": "UniProtKB", "id": "O22781", "url": "https://www.uniprot.org/uniprotkb/O22781" }, { "database": "PubMed", "id": "15775980", "url": "https://glygen.org/publication/PubMed/15775980" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "143", "end_pos": "143" }, { "start_pos": "351", "end_pos": "351" }, { "start_pos": "385", "end_pos": "385" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "584", "end_pos": "584" }, { "start_pos": "620", "end_pos": "620" }, { "start_pos": "630", "end_pos": "630" }, { "start_pos": "645", "end_pos": "645" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O22781-1.630.630", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22788-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "O22788-1", "length": 236, "uniprot_id": "PXG3_ARATH", "protein_name": "Probable peroxygenase 3", "refseq_ac": "NP_001031472", "refseq_name": "Caleosin-related family protein", "gene_name": "PXG3", "gene_names_uniprotkb": "PXG3; CLO3; F4P9.15; RD20", "gene_names_refseq": "Arabidopsis thaliana caleosin 3; AtCLO3; AtRD20; CALEOSIN 3; CLO-3; CLO3; F4P9.15; F4P9_15; PXG3; RD20; RESPONSIVE TO DESSICATION 20; caleosin 3; peroxygenase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22788", "url": "https://www.uniprot.org/uniprotkb/O22788" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22788", "url": "https://www.uniprot.org/uniprotkb/O22788", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LAKDEDGFLSKEAVRGCFDG", "down_seq": "LFEQIAKERANSRKQD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22788", "url": "https://www.uniprot.org/uniprotkb/O22788" } ], "site_lbl": "Ser220" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "220", "end_pos": "220" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22822-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "O22822-1", "length": 449, "uniprot_id": "U74F2_ARATH", "protein_name": "UDP-glycosyltransferase 74F2", "refseq_ac": "NP_181910", "refseq_name": "UDP-glucosyltransferase 74F2", "gene_name": "UGT74F2", "gene_names_uniprotkb": "UGT74F2; F18O19.7; GT; SAGT1; SGT1", "gene_names_refseq": "ATSAGT1; Arabidopsis thaliana salicylic acid glucosyltransferase 1; F18O19.7; GT; SAGT1; SGT1; UDP-glucose:salicylic acid glucosyltransferase 1; UDP-glucosyltransferase 74F2; UGT74F2; salicylic acid glucosyltransferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22822", "url": "https://www.uniprot.org/uniprotkb/O22822" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MEHKRGHVLAVPYP", "down_seq": "QGHITPFRQFCKRLHFKGLK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr15", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22822-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "O22822-1", "length": 449, "uniprot_id": "U74F2_ARATH", "protein_name": "UDP-glycosyltransferase 74F2", "refseq_ac": "NP_181910", "refseq_name": "UDP-glucosyltransferase 74F2", "gene_name": "UGT74F2", "gene_names_uniprotkb": "UGT74F2; F18O19.7; GT; SAGT1; SGT1", "gene_names_refseq": "ATSAGT1; Arabidopsis thaliana salicylic acid glucosyltransferase 1; F18O19.7; GT; SAGT1; SGT1; UDP-glucose:salicylic acid glucosyltransferase 1; UDP-glucosyltransferase 74F2; UGT74F2; salicylic acid glucosyltransferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22822", "url": "https://www.uniprot.org/uniprotkb/O22822" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "5U6M", "url": "https://www.rcsb.org/structure/5U6M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5U6N", "url": "https://www.rcsb.org/structure/5U6N", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5V2J", "url": "https://www.rcsb.org/structure/5V2J", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5V2K", "url": "https://www.rcsb.org/structure/5V2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5U6S", "url": "https://www.rcsb.org/structure/5U6S", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5U6M|B|177", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5U6M|A|177", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5U6N|B|177", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5U6N|A|177", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5V2J|B|177", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5V2J|A|177", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5V2K|B|177", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5V2K|A|177", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5U6S|B|177", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5U6S|A|177", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EELPFLELQDLPSFFSVSGS", "down_seq": "PAYFEMVLQQFINFEKADFV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "Y", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5U6M&bu=0&command=select+.B:177;+center+selection;+zoom+selection" }, "start_aa": "Tyr", "end_aa": "Tyr", "residue": "Tyr", "site_lbl": "Tyr177", "evidence": [ { "id": "5U6M", "database": "PDB", "url": "https://www.rcsb.org/structure/5U6M" }, { "id": "5U6N", "database": "PDB", "url": "https://www.rcsb.org/structure/5U6N" }, { "id": "5V2J", "database": "PDB", "url": "https://www.rcsb.org/structure/5V2J" }, { "id": "5V2K", "database": "PDB", "url": "https://www.rcsb.org/structure/5V2K" }, { "id": "5U6S", "database": "PDB", "url": "https://www.rcsb.org/structure/5U6S" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22822-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "O22822-1", "length": 449, "uniprot_id": "U74F2_ARATH", "protein_name": "UDP-glycosyltransferase 74F2", "refseq_ac": "NP_181910", "refseq_name": "UDP-glucosyltransferase 74F2", "gene_name": "UGT74F2", "gene_names_uniprotkb": "UGT74F2; F18O19.7; GT; SAGT1; SGT1", "gene_names_refseq": "ATSAGT1; Arabidopsis thaliana salicylic acid glucosyltransferase 1; F18O19.7; GT; SAGT1; SGT1; UDP-glucose:salicylic acid glucosyltransferase 1; UDP-glucosyltransferase 74F2; UGT74F2; salicylic acid glucosyltransferase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22822", "url": "https://www.uniprot.org/uniprotkb/O22822" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LELHENELWSKACPVLTIGP", "down_seq": "IPSIYLDQRIKSDTGYDLNL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr225", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "15", "end_pos": "15" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22823-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "O22823-1", "length": 91, "uniprot_id": "LSM6B_ARATH", "protein_name": "Sm-like protein LSM36B", "refseq_ac": "NP_001078052", "refseq_name": "Small nuclear ribonucleoprotein family protein", "gene_name": "LSM6B", "gene_names_uniprotkb": "LSM6B", "gene_names_refseq": "F18O19.8; LSM6B; SM-like 6B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22823", "url": "https://www.uniprot.org/uniprotkb/O22823" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22823", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22823", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MSGVGEKASGTTK", "down_seq": "PADFLKSIRGKPVVVKLNSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22823", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22823" } ], "site_lbl": "Thr14" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22873-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "O22873-1", "length": 367, "uniprot_id": "BZP18_ARATH", "protein_name": "bZIP transcription factor 18", "refseq_ac": "NP_181594", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "BZIP18", "gene_names_uniprotkb": "BZIP18; T2P4.3", "gene_names_refseq": "T2P4.3; T2P4_3; bZIP18; basic leucine-zipper 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SNPQPNQSNLSQCPPLATAP", "down_seq": "PAPVRGPYHRRAHSEVQFRL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr25", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "O22873-1.39.39", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22873-1.118.118", "start_pos": 118, "end_pos": 118, "uniprot_canonical_ac": "O22873-1", "length": 367, "uniprot_id": "BZP18_ARATH", "protein_name": "bZIP transcription factor 18", "refseq_ac": "NP_181594", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "BZIP18", "gene_names_uniprotkb": "BZIP18; T2P4.3", "gene_names_refseq": "T2P4.3; T2P4_3; bZIP18; basic leucine-zipper 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PFSAENGGAEAGNSRPRHRH", "down_seq": "LSVDGSSTLESIEAKKAMAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser118" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O22873-1.120.120", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22873-1.124.124", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22873-1.120.120", "start_pos": 120, "end_pos": 120, "uniprot_canonical_ac": "O22873-1", "length": 367, "uniprot_id": "BZP18_ARATH", "protein_name": "bZIP transcription factor 18", "refseq_ac": "NP_181594", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "BZIP18", "gene_names_uniprotkb": "BZIP18; T2P4.3", "gene_names_refseq": "T2P4.3; T2P4_3; bZIP18; basic leucine-zipper 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAENGGAEAGNSRPRHRHSL", "down_seq": "VDGSSTLESIEAKKAMAPDK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser120" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O22873-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22873-1.124.124", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22873-1.124.124", "start_pos": 124, "end_pos": 124, "uniprot_canonical_ac": "O22873-1", "length": 367, "uniprot_id": "BZP18_ARATH", "protein_name": "bZIP transcription factor 18", "refseq_ac": "NP_181594", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "BZIP18", "gene_names_uniprotkb": "BZIP18; T2P4.3", "gene_names_refseq": "T2P4.3; T2P4_3; bZIP18; basic leucine-zipper 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGAEAGNSRPRHRHSLSVDG", "down_seq": "STLESIEAKKAMAPDKLAEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser124" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O22873-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22873-1.120.120", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22873-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "O22873-1", "length": 367, "uniprot_id": "BZP18_ARATH", "protein_name": "bZIP transcription factor 18", "refseq_ac": "NP_181594", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "BZIP18", "gene_names_uniprotkb": "BZIP18; T2P4.3", "gene_names_refseq": "T2P4.3; T2P4_3; bZIP18; basic leucine-zipper 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLATAPTPAPVRGPYHRRAH", "down_seq": "EVQFRLPEDLDLSEPFGGFD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser39" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O22873-1.25.25", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22873-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "O22873-1", "length": 367, "uniprot_id": "BZP18_ARATH", "protein_name": "bZIP transcription factor 18", "refseq_ac": "NP_181594", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "BZIP18", "gene_names_uniprotkb": "BZIP18; T2P4.3", "gene_names_refseq": "T2P4.3; T2P4_3; bZIP18; basic leucine-zipper 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DLSEPFGGFDELGSEDDLFC", "down_seq": "YMDIEKLGSGSGSASDSAGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "site_lbl": "Ser70" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O22873-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O22873-1.81.81", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O22873-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O22873-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22873-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "O22873-1", "length": 367, "uniprot_id": "BZP18_ARATH", "protein_name": "bZIP transcription factor 18", "refseq_ac": "NP_181594", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "BZIP18", "gene_names_uniprotkb": "BZIP18; T2P4.3", "gene_names_refseq": "T2P4.3; T2P4_3; bZIP18; basic leucine-zipper 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DELGSEDDLFCSYMDIEKLG", "down_seq": "GSGSASDSAGPSAPRSDNPF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O22873-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22873-1.81.81", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22873-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22873-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22873-1.81.81", "start_pos": 81, "end_pos": 81, "uniprot_canonical_ac": "O22873-1", "length": 367, "uniprot_id": "BZP18_ARATH", "protein_name": "bZIP transcription factor 18", "refseq_ac": "NP_181594", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "BZIP18", "gene_names_uniprotkb": "BZIP18; T2P4.3", "gene_names_refseq": "T2P4.3; T2P4_3; bZIP18; basic leucine-zipper 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGSEDDLFCSYMDIEKLGSG", "down_seq": "GSASDSAGPSAPRSDNPFSA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser81" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O22873-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22873-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22873-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O22873-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22873-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "O22873-1", "length": 367, "uniprot_id": "BZP18_ARATH", "protein_name": "bZIP transcription factor 18", "refseq_ac": "NP_181594", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "BZIP18", "gene_names_uniprotkb": "BZIP18; T2P4.3", "gene_names_refseq": "T2P4.3; T2P4_3; bZIP18; basic leucine-zipper 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEDDLFCSYMDIEKLGSGSG", "down_seq": "ASDSAGPSAPRSDNPFSAEN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser83" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O22873-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22873-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22873-1.81.81", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O22873-1.85.85", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22873-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "O22873-1", "length": 367, "uniprot_id": "BZP18_ARATH", "protein_name": "bZIP transcription factor 18", "refseq_ac": "NP_181594", "refseq_name": "Basic-leucine zipper (bZIP) transcription factor family protein", "gene_name": "BZIP18", "gene_names_uniprotkb": "BZIP18; T2P4.3", "gene_names_refseq": "T2P4.3; T2P4_3; bZIP18; basic leucine-zipper 18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22873", "url": "https://www.uniprot.org/uniprotkb/O22873" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDLFCSYMDIEKLGSGSGSA", "down_seq": "DSAGPSAPRSDNPFSAENGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22873", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22873" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser85" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "118", "end_pos": "118" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "124", "end_pos": "124" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "81", "end_pos": "81" }, { "start_pos": "83", "end_pos": "83" }, { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O22873-1.70.70", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O22873-1.79.79", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O22873-1.81.81", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O22873-1.83.83", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22914-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "O22914-1", "length": 124, "uniprot_id": "CP121_ARATH", "protein_name": "Calvin cycle protein CP12-1, chloroplastic", "refseq_ac": "NP_566100", "refseq_name": "CP12 domain-containing protein 1", "gene_name": "CP12-1", "gene_names_uniprotkb": "CP12-1; T8I13.24", "gene_names_refseq": "CP12 DOMAIN-CONTAINING PROTEIN 1; CP12 domain-containing protein 1; CP12-1; CP12; T8I13.24", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22914", "url": "https://www.uniprot.org/uniprotkb/O22914" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O22914", "url": "https://www.uniprot.org/uniprotkb/O22914" }, { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VRLNYPWKFGSMKRMVVVKA", "down_seq": "SEGEISEKVEKSIQEAKETC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr48" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O22914-1.49.49", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O22914-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22914-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "O22914-1", "length": 124, "uniprot_id": "CP121_ARATH", "protein_name": "Calvin cycle protein CP12-1, chloroplastic", "refseq_ac": "NP_566100", "refseq_name": "CP12 domain-containing protein 1", "gene_name": "CP12-1", "gene_names_uniprotkb": "CP12-1; T8I13.24", "gene_names_refseq": "CP12 DOMAIN-CONTAINING PROTEIN 1; CP12 domain-containing protein 1; CP12-1; CP12; T8I13.24", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22914", "url": "https://www.uniprot.org/uniprotkb/O22914" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O22914", "url": "https://www.uniprot.org/uniprotkb/O22914" }, { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLNYPWKFGSMKRMVVVKAT", "down_seq": "EGEISEKVEKSIQEAKETCA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser49" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O22914-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O22914-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22914-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "O22914-1", "length": 124, "uniprot_id": "CP121_ARATH", "protein_name": "Calvin cycle protein CP12-1, chloroplastic", "refseq_ac": "NP_566100", "refseq_name": "CP12 domain-containing protein 1", "gene_name": "CP12-1", "gene_names_uniprotkb": "CP12-1; T8I13.24", "gene_names_refseq": "CP12 DOMAIN-CONTAINING PROTEIN 1; CP12 domain-containing protein 1; CP12-1; CP12; T8I13.24", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22914", "url": "https://www.uniprot.org/uniprotkb/O22914" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O22914", "url": "https://www.uniprot.org/uniprotkb/O22914" }, { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WKFGSMKRMVVVKATSEGEI", "down_seq": "EKVEKSIQEAKETCADDPVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22914", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22914" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser54" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "54", "end_pos": "54" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O22914-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O22914-1.49.49", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22921-1.85.85", "start_pos": 85, "end_pos": 85, "uniprot_canonical_ac": "O22921-1", "length": 393, "uniprot_id": "WRK25_ARATH", "protein_name": "Probable WRKY transcription factor 25", "refseq_ac": "NP_180584", "refseq_name": "WRKY DNA-binding protein 25", "gene_name": "WRKY25", "gene_names_uniprotkb": "WRKY25; T9D9.6", "gene_names_refseq": "ATWRKY25; T9D9.6; T9D9_6; WRKY DNA-binding protein 25; WRKY25", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22921", "url": "https://www.uniprot.org/uniprotkb/O22921" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FSDYLDSPLLLSSSHSLISP", "down_seq": "TGTFPLQGFNGTTNNHSDFP", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr85", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "85", "end_pos": "85" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22932-1.167.167", "start_pos": 167, "end_pos": 167, "uniprot_canonical_ac": "O22932-1", "length": 435, "uniprot_id": "CIPKB_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 11", "refseq_ac": "NP_180595", "refseq_name": "SOS3-interacting protein 4", "gene_name": "CIPK11", "gene_names_uniprotkb": "CIPK11; PKS5; SIP4; SnRK3.22; T9D9.17", "gene_names_refseq": "CBL-INTERACTING PROTEIN KINASE 11; CIPK11; PKS5; PROTEIN KINASE SOS2-LIKE 5; SIP4; SNF1-RELATED PROTEIN KINASE 3.22; SNRK3.22; SOS3-interacting protein 4; T9D9.17; T9D9_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22932", "url": "https://www.uniprot.org/uniprotkb/O22932" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22932", "url": "https://www.uniprot.org/uniprotkb/O22932", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KPENLLIDENGNLKVSDFGL", "down_seq": "ALTDQIRPDGLLHTLCGTPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O22932", "url": "https://www.uniprot.org/uniprotkb/O22932" } ], "site_lbl": "Ser167" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "O22932-1.181.181", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22932-1.181.181", "start_pos": 181, "end_pos": 181, "uniprot_canonical_ac": "O22932-1", "length": 435, "uniprot_id": "CIPKB_ARATH", "protein_name": "CBL-interacting serine/threonine-protein kinase 11", "refseq_ac": "NP_180595", "refseq_name": "SOS3-interacting protein 4", "gene_name": "CIPK11", "gene_names_uniprotkb": "CIPK11; PKS5; SIP4; SnRK3.22; T9D9.17", "gene_names_refseq": "CBL-INTERACTING PROTEIN KINASE 11; CIPK11; PKS5; PROTEIN KINASE SOS2-LIKE 5; SIP4; SNF1-RELATED PROTEIN KINASE 3.22; SNRK3.22; SOS3-interacting protein 4; T9D9.17; T9D9_17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22932", "url": "https://www.uniprot.org/uniprotkb/O22932" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22932", "url": "https://www.uniprot.org/uniprotkb/O22932", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VSDFGLSALTDQIRPDGLLH", "down_seq": "LCGTPAYVAPEILSKKGYEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O22932", "url": "https://www.uniprot.org/uniprotkb/O22932" } ], "site_lbl": "Thr181" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "167", "end_pos": "167" }, { "start_pos": "181", "end_pos": "181" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O22932-1.167.167", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22943-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "O22943-1", "length": 771, "uniprot_id": "STL1_ARATH", "protein_name": "Probable glycosyltransferase STELLO1", "refseq_ac": "NP_565960", "refseq_name": "transmembrane protein, putative (DUF288)", "gene_name": "STL1", "gene_names_uniprotkb": "STL1; T11A7.13", "gene_names_refseq": "T11A7.13; T11A7_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ELVGLDSKQEPILQYSHENP", "down_seq": "RTVVNPYIHFGQRSVWPRGL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn242", "evidence": [ { "id": "O22943", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22943#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "729", "end_pos": "729" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "205", "end_pos": "206" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "296", "end_pos": "298" }, { "start_pos": "591", "end_pos": "592" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "O22943-1.260.260", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22943-1.729.729", "start_pos": 729, "end_pos": 729, "uniprot_canonical_ac": "O22943-1", "length": 771, "uniprot_id": "STL1_ARATH", "protein_name": "Probable glycosyltransferase STELLO1", "refseq_ac": "NP_565960", "refseq_name": "transmembrane protein, putative (DUF288)", "gene_name": "STL1", "gene_names_uniprotkb": "STL1; T11A7.13", "gene_names_refseq": "T11A7.13; T11A7_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PQNFDPVLGSMVYKRKSASF", "down_seq": "TSSSLYSAKAPAVHPWSISS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn729", "evidence": [ { "id": "O22943", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O22943#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "729", "end_pos": "729" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "205", "end_pos": "206" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "296", "end_pos": "298" }, { "start_pos": "591", "end_pos": "592" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O22943-1.205.206", "start_pos": 205, "end_pos": 206, "uniprot_canonical_ac": "O22943-1", "length": 771, "uniprot_id": "STL1_ARATH", "protein_name": "Probable glycosyltransferase STELLO1", "refseq_ac": "NP_565960", "refseq_name": "transmembrane protein, putative (DUF288)", "gene_name": "STL1", "gene_names_uniprotkb": "STL1; T11A7.13", "gene_names_refseq": "T11A7.13; T11A7_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Golgi-localized STELLO proteins regulate the assembly and trafficking of cellulose synthase complexes in Arabidopsis.", "journal": "Nature communications", "date": "2016-06-09", "authors": "Zhang Yi, Nikolovski Nino, Sorieul Mathias, Vellosillo Tamara, McFarlane Heather E, Dupree Ray, Kesten Christopher, Schneider Ren\u00e9, Driemeier Carlos, Lathe Rahul, Lampugnani Edwin, Yu Xiaolan, Ivakov Alexander, Doblin Monika S, Mortimer Jenny C, Brown Steven P, Persson Staffan, Dupree Paul", "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" } ], "reference": [ { "type": "PubMed", "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162" } ] } ], "crossref": [ { "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "DD", "start_aa": "D", "up_seq": "RKSVGYLFAIQHGAKKIYDA", "down_seq": "RGEVIDGDLGKHFDVELVGL", "mutagenesis": [ { "sequence_org": "DD", "sequence_mut": "AA", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" }, { "database": "PubMed", "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "729", "end_pos": "729" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "205", "end_pos": "206" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "296", "end_pos": "298" }, { "start_pos": "591", "end_pos": "592" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22943-1.260.260", "start_pos": 260, "end_pos": 260, "uniprot_canonical_ac": "O22943-1", "length": 771, "uniprot_id": "STL1_ARATH", "protein_name": "Probable glycosyltransferase STELLO1", "refseq_ac": "NP_565960", "refseq_name": "transmembrane protein, putative (DUF288)", "gene_name": "STL1", "gene_names_uniprotkb": "STL1; T11A7.13", "gene_names_refseq": "T11A7.13; T11A7_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Golgi-localized STELLO proteins regulate the assembly and trafficking of cellulose synthase complexes in Arabidopsis.", "journal": "Nature communications", "date": "2016-06-09", "authors": "Zhang Yi, Nikolovski Nino, Sorieul Mathias, Vellosillo Tamara, McFarlane Heather E, Dupree Ray, Kesten Christopher, Schneider Ren\u00e9, Driemeier Carlos, Lathe Rahul, Lampugnani Edwin, Yu Xiaolan, Ivakov Alexander, Doblin Monika S, Mortimer Jenny C, Brown Steven P, Persson Staffan, Dupree Paul", "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" } ], "reference": [ { "type": "PubMed", "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162" } ] } ], "crossref": [ { "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "NPNRTVVNPYIHFGQRSVWP", "down_seq": "GLPLENVGEINHEEYYTEVF", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" }, { "database": "PubMed", "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "729", "end_pos": "729" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "205", "end_pos": "206" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "296", "end_pos": "298" }, { "start_pos": "591", "end_pos": "592" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O22943-1.242.242", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22943-1.296.298", "start_pos": 296, "end_pos": 298, "uniprot_canonical_ac": "O22943-1", "length": 771, "uniprot_id": "STL1_ARATH", "protein_name": "Probable glycosyltransferase STELLO1", "refseq_ac": "NP_565960", "refseq_name": "transmembrane protein, putative (DUF288)", "gene_name": "STL1", "gene_names_uniprotkb": "STL1; T11A7.13", "gene_names_refseq": "T11A7.13; T11A7_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Golgi-localized STELLO proteins regulate the assembly and trafficking of cellulose synthase complexes in Arabidopsis.", "journal": "Nature communications", "date": "2016-06-09", "authors": "Zhang Yi, Nikolovski Nino, Sorieul Mathias, Vellosillo Tamara, McFarlane Heather E, Dupree Ray, Kesten Christopher, Schneider Ren\u00e9, Driemeier Carlos, Lathe Rahul, Lampugnani Edwin, Yu Xiaolan, Ivakov Alexander, Doblin Monika S, Mortimer Jenny C, Brown Steven P, Persson Staffan, Dupree Paul", "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" } ], "reference": [ { "type": "PubMed", "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162" } ] } ], "crossref": [ { "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "DVD", "start_aa": "D", "up_seq": "YTEVFGGKQFIQQGISNGLP", "down_seq": "SVFYFTRKTTLEAFDIRFDE", "mutagenesis": [ { "sequence_org": "DVD", "sequence_mut": "AVA", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" }, { "database": "PubMed", "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "729", "end_pos": "729" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "205", "end_pos": "206" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "296", "end_pos": "298" }, { "start_pos": "591", "end_pos": "592" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22943-1.591.592", "start_pos": 591, "end_pos": 592, "uniprot_canonical_ac": "O22943-1", "length": 771, "uniprot_id": "STL1_ARATH", "protein_name": "Probable glycosyltransferase STELLO1", "refseq_ac": "NP_565960", "refseq_name": "transmembrane protein, putative (DUF288)", "gene_name": "STL1", "gene_names_uniprotkb": "STL1; T11A7.13", "gene_names_refseq": "T11A7.13; T11A7_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Golgi-localized STELLO proteins regulate the assembly and trafficking of cellulose synthase complexes in Arabidopsis.", "journal": "Nature communications", "date": "2016-06-09", "authors": "Zhang Yi, Nikolovski Nino, Sorieul Mathias, Vellosillo Tamara, McFarlane Heather E, Dupree Ray, Kesten Christopher, Schneider Ren\u00e9, Driemeier Carlos, Lathe Rahul, Lampugnani Edwin, Yu Xiaolan, Ivakov Alexander, Doblin Monika S, Mortimer Jenny C, Brown Steven P, Persson Staffan, Dupree Paul", "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" } ], "reference": [ { "type": "PubMed", "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162" } ] } ], "crossref": [ { "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "DD", "start_aa": "D", "up_seq": "KHLPKIFDRYSSAEGFLFVE", "down_seq": "TVLNYWNLLQADKSKIWTTD", "mutagenesis": [ { "sequence_org": "DD", "sequence_mut": "AA", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "O22943", "url": "https://www.uniprot.org/uniprotkb/O22943" }, { "database": "PubMed", "id": "27277162", "url": "https://glygen.org/publication/PubMed/27277162" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "242", "end_pos": "242" }, { "start_pos": "729", "end_pos": "729" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "205", "end_pos": "206" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "296", "end_pos": "298" }, { "start_pos": "591", "end_pos": "592" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22993-1.524.524", "start_pos": 524, "end_pos": 524, "uniprot_canonical_ac": "O22993-1", "length": 946, "uniprot_id": "FTSI1_ARATH", "protein_name": "Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic", "refseq_ac": "NP_567691", "refseq_name": "FtsH extracellular protease family", "gene_name": "FTSHI1", "gene_names_uniprotkb": "FTSHI1; ARC1; T19F6.22; T32A16.10", "gene_names_refseq": "ACCUMULATION AND REPLICATION OF CHLOROPLASTS 1; ARC1; FTSH inactive protease 1; FtsHi1; T32A16.110; T32A16_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22993", "url": "https://www.uniprot.org/uniprotkb/O22993" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "FtsHi1/ARC1 is an essential gene in Arabidopsis that links chloroplast biogenesis and division.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-12", "authors": "Kadirjan-Kalbach Deena K, Yoder David W, Ruckle Michael E, Larkin Robert M, Osteryoung Katherine W", "evidence": [ { "database": "UniProtKB", "id": "O22993", "url": "https://www.uniprot.org/uniprotkb/O22993" } ], "reference": [ { "type": "PubMed", "id": "22900897", "url": "https://glygen.org/publication/PubMed/22900897" } ] }, { "title": "A Genetic Analysis of Chloroplast Division and Expansion in Arabidopsis thaliana.", "journal": "Plant physiology", "date": "1994-01", "authors": "Pyke K. A., Leech R. M.", "evidence": [ { "database": "UniProtKB", "id": "O22993", "url": "https://www.uniprot.org/uniprotkb/O22993" } ], "reference": [ { "type": "PubMed", "id": "12232072", "url": "https://glygen.org/publication/PubMed/12232072" } ] } ], "crossref": [ { "id": "O22993", "url": "https://www.uniprot.org/uniprotkb/O22993", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22900897", "url": "https://glygen.org/publication/PubMed/22900897", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12232072", "url": "https://glygen.org/publication/PubMed/12232072", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VGVGSARIRDLFKRAKVNKP", "down_seq": "VIFIDEIDALATRRQGIFKE", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "P", "comment": "In arcl/ftsHi1-1; Pale seedlings. Smaller and more numerous chloroplasts with abnormal thylakoid morphology.", "evidence": [ { "database": "UniProtKB", "id": "O22993", "url": "https://www.uniprot.org/uniprotkb/O22993" }, { "database": "PubMed", "id": "22900897", "url": "https://glygen.org/publication/PubMed/22900897" }, { "database": "PubMed", "id": "12232072", "url": "https://glygen.org/publication/PubMed/12232072" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "524", "end_pos": "524" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O22993-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "O22993-1", "length": 946, "uniprot_id": "FTSI1_ARATH", "protein_name": "Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic", "refseq_ac": "NP_567691", "refseq_name": "FtsH extracellular protease family", "gene_name": "FTSHI1", "gene_names_uniprotkb": "FTSHI1; ARC1; T19F6.22; T32A16.10", "gene_names_refseq": "ACCUMULATION AND REPLICATION OF CHLOROPLASTS 1; ARC1; FTSH inactive protease 1; FtsHi1; T32A16.110; T32A16_110", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O22993", "url": "https://www.uniprot.org/uniprotkb/O22993" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O22993", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22993", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VEPRYRVGDKLYNLKEREDL", "down_seq": "KGTNAATGAFEFIKRKFDSK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O22993", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O22993" } ], "site_lbl": "Ser107" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "524", "end_pos": "524" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "107", "end_pos": "107" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O23044-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "O23044-1", "length": 326, "uniprot_id": "PER3_ARATH", "protein_name": "Peroxidase 3", "refseq_ac": "NP_172018", "refseq_name": "Peroxidase superfamily protein", "gene_name": "PER3", "gene_names_uniprotkb": "PER3; P3; RCI3; YUP8H12.13", "gene_names_refseq": "PEROXIDASE PRECURSOR; RARE COLD INDUCIBLE GENE 3; RCI3A; RCI3; YUP8H12.13; YUP8H12_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SCADIIALASRDAVVFTGGP", "down_seq": "WSVPTGRRDGRISNAAEALA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "O23044", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23044#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O23044-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "O23044-1", "length": 326, "uniprot_id": "PER3_ARATH", "protein_name": "Peroxidase 3", "refseq_ac": "NP_172018", "refseq_name": "Peroxidase superfamily protein", "gene_name": "PER3", "gene_names_uniprotkb": "PER3; P3; RCI3; YUP8H12.13", "gene_names_refseq": "PEROXIDASE PRECURSOR; RARE COLD INDUCIBLE GENE 3; RCI3A; RCI3; YUP8H12.13; YUP8H12_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RDGRISNAAEALANIPPPTS", "down_seq": "ITNLQTLFANQGLDLKDLVL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn166", "evidence": [ { "id": "O23044", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23044#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O23044-1.207.207", "start_pos": 207, "end_pos": 207, "uniprot_canonical_ac": "O23044-1", "length": 326, "uniprot_id": "PER3_ARATH", "protein_name": "Peroxidase 3", "refseq_ac": "NP_172018", "refseq_name": "Peroxidase superfamily protein", "gene_name": "PER3", "gene_names_uniprotkb": "PER3; P3; RCI3; YUP8H12.13", "gene_names_refseq": "PEROXIDASE PRECURSOR; RARE COLD INDUCIBLE GENE 3; RCI3A; RCI3; YUP8H12.13; YUP8H12_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LSGAHTIGVSHCSSFTNRLY", "down_seq": "FTGRGGQDPALDSEYAANLK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn207", "evidence": [ { "id": "O23044", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23044#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O23044-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "O23044-1", "length": 326, "uniprot_id": "PER3_ARATH", "protein_name": "Peroxidase 3", "refseq_ac": "NP_172018", "refseq_name": "Peroxidase superfamily protein", "gene_name": "PER3", "gene_names_uniprotkb": "PER3; P3; RCI3; YUP8H12.13", "gene_names_refseq": "PEROXIDASE PRECURSOR; RARE COLD INDUCIBLE GENE 3; RCI3A; RCI3; YUP8H12.13; YUP8H12_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ALDSEYAANLKSRKCPSLND", "down_seq": "KTIVEMDPGSRKTFDLSYYQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn237", "evidence": [ { "id": "O23044", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23044#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O23044-1.239.239", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O23044-1.256.256", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O23044-1.80.80", "start_pos": 80, "end_pos": 80, "uniprot_canonical_ac": "O23044-1", "length": 326, "uniprot_id": "PER3_ARATH", "protein_name": "Peroxidase 3", "refseq_ac": "NP_172018", "refseq_name": "Peroxidase superfamily protein", "gene_name": "PER3", "gene_names_uniprotkb": "PER3; P3; RCI3; YUP8H12.13", "gene_names_refseq": "PEROXIDASE PRECURSOR; RARE COLD INDUCIBLE GENE 3; RCI3A; RCI3; YUP8H12.13; YUP8H12_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LIRMHFHDCFVRGCDGSVLI", "down_seq": "STSGNAERDATPNLTVRGFG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn80", "evidence": [ { "id": "O23044", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23044#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O23044-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "O23044-1", "length": 326, "uniprot_id": "PER3_ARATH", "protein_name": "Peroxidase 3", "refseq_ac": "NP_172018", "refseq_name": "Peroxidase superfamily protein", "gene_name": "PER3", "gene_names_uniprotkb": "PER3; P3; RCI3; YUP8H12.13", "gene_names_refseq": "PEROXIDASE PRECURSOR; RARE COLD INDUCIBLE GENE 3; RCI3A; RCI3; YUP8H12.13; YUP8H12_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O23044", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23044" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "O23044", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23044", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DSEYAANLKSRKCPSLNDNK", "down_seq": "IVEMDPGSRKTFDLSYYQLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O23044", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23044" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Thr239" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O23044-1.237.237", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O23044-1.256.256", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O23044-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "O23044-1", "length": 326, "uniprot_id": "PER3_ARATH", "protein_name": "Peroxidase 3", "refseq_ac": "NP_172018", "refseq_name": "Peroxidase superfamily protein", "gene_name": "PER3", "gene_names_uniprotkb": "PER3; P3; RCI3; YUP8H12.13", "gene_names_refseq": "PEROXIDASE PRECURSOR; RARE COLD INDUCIBLE GENE 3; RCI3A; RCI3; YUP8H12.13; YUP8H12_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23044", "url": "https://www.uniprot.org/uniprotkb/O23044" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O23044", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23044" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "O23044", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23044", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DNKTIVEMDPGSRKTFDLSY", "down_seq": "QLVLKRRGLFQSDSALTTNP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O23044", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23044" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Tyr256" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "138", "end_pos": "138" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "207", "end_pos": "207" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "80", "end_pos": "80" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "256", "end_pos": "256" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O23044-1.237.237", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O23044-1.239.239", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O23066-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "O23066-1", "length": 553, "uniprot_id": "C86A2_ARATH", "protein_name": "Cytochrome P450 86A2", "refseq_ac": "NP_191946", "refseq_name": "cytochrome P450, family 86, subfamily A, polypeptide 2", "gene_name": "CYP86A2", "gene_names_uniprotkb": "CYP86A2; ATT1; A_IG005I10.21; F5I10.21", "gene_names_refseq": "''cytochrome P450; ABERRANT INDUCTION OF TYPE THREE 1; ATT1; A_IG005I10.21; A_IG005I10_21; CYP86A2; F5I10.21; F5I10_21; cytochrome P450; family 86; polypeptide 2''; polypeptide 2; subfamily A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23066", "url": "https://www.uniprot.org/uniprotkb/O23066" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis CYP86A2 represses Pseudomonas syringae type III genes and is required for cuticle development.", "journal": "The EMBO journal", "date": "2004-07-21", "authors": "Xiao Fangming, Goodwin S Mark, Xiao Yanmei, Sun Zhaoyu, Baker Douglas, Tang Xiaoyan, Jenks Matthew A, Zhou Jian-Min", "evidence": [ { "database": "UniProtKB", "id": "O23066", "url": "https://www.uniprot.org/uniprotkb/O23066" } ], "reference": [ { "type": "PubMed", "id": "15241470", "url": "https://glygen.org/publication/PubMed/15241470" } ] } ], "crossref": [ { "id": "O23066", "url": "https://www.uniprot.org/uniprotkb/O23066", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15241470", "url": "https://glygen.org/publication/PubMed/15241470", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "DQSYSETFLRHVALNFILAG", "down_seq": "DTSSVALSWFFWLITTHPTV", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "C", "comment": "In cyp86a2-1; reduction of fatty acids in the cuticle membrane.", "evidence": [ { "database": "UniProtKB", "id": "O23066", "url": "https://www.uniprot.org/uniprotkb/O23066" }, { "database": "PubMed", "id": "15241470", "url": "https://glygen.org/publication/PubMed/15241470" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "309", "end_pos": "309" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O23141-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "O23141-1", "length": 711, "uniprot_id": "SPE2_ARATH", "protein_name": "Arginine decarboxylase 2", "refseq_ac": "NP_195197", "refseq_name": "arginine decarboxylase 2", "gene_name": "ADC2", "gene_names_uniprotkb": "ADC2; SPE2; T4L20.290", "gene_names_refseq": "ADC2; ARGININE DECARBOXYLASE; ATADC2; SPE2; T4L20.290; T4L20_290; arginine decarboxylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23141", "url": "https://www.uniprot.org/uniprotkb/O23141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O23141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23141", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDVFIPASSPTSAAVVVDRW", "down_seq": "PSLSSSLYRIDGWGAPYFIA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O23141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23141" } ], "site_lbl": "Ser43" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "648", "end_pos": "648" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O23141-1.47.47", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O23141-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "O23141-1", "length": 711, "uniprot_id": "SPE2_ARATH", "protein_name": "Arginine decarboxylase 2", "refseq_ac": "NP_195197", "refseq_name": "arginine decarboxylase 2", "gene_name": "ADC2", "gene_names_uniprotkb": "ADC2; SPE2; T4L20.290", "gene_names_refseq": "ADC2; ARGININE DECARBOXYLASE; ATADC2; SPE2; T4L20.290; T4L20_290; arginine decarboxylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23141", "url": "https://www.uniprot.org/uniprotkb/O23141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O23141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23141", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IPASSPTSAAVVVDRWSPSL", "down_seq": "SSLYRIDGWGAPYFIANSSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O23141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23141" } ], "site_lbl": "Ser47" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "648", "end_pos": "648" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O23141-1.43.43", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O23141-1.648.648", "start_pos": 648, "end_pos": 648, "uniprot_canonical_ac": "O23141-1", "length": 711, "uniprot_id": "SPE2_ARATH", "protein_name": "Arginine decarboxylase 2", "refseq_ac": "NP_195197", "refseq_name": "arginine decarboxylase 2", "gene_name": "ADC2", "gene_names_uniprotkb": "ADC2; SPE2; T4L20.290", "gene_names_refseq": "ADC2; ARGININE DECARBOXYLASE; ATADC2; SPE2; T4L20.290; T4L20_290; arginine decarboxylase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23141", "url": "https://www.uniprot.org/uniprotkb/O23141" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O23141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23141" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "O23141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23141", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELMFQTLKHRAEEMMHTKGG", "down_seq": "EGENEEEEEDDEFNNVAASL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O23141", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23141" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser648" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "43", "end_pos": "43" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "648", "end_pos": "648" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O23147-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "O23147-1", "length": 431, "uniprot_id": "ADPG1_ARATH", "protein_name": "Polygalacturonase ADPG1", "refseq_ac": "NP_191310", "refseq_name": "Pectin lyase-like superfamily protein", "gene_name": "ADPG1", "gene_names_uniprotkb": "ADPG1; PGDZAT; SAC70; T8H10.110", "gene_names_refseq": "ADPG1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23147", "url": "https://www.uniprot.org/uniprotkb/O23147" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O23147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23147", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DDTQAFKKAWKKACSTNGVT", "down_seq": "FLVPKGKTYLLKSTRFRGPC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O23147", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23147" } ], "site_lbl": "Thr102" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "102", "end_pos": "102" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O23160-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "O23160-1", "length": 320, "uniprot_id": "MYB73_ARATH", "protein_name": "Transcription factor MYB73", "refseq_ac": "NP_195443", "refseq_name": "myb domain protein 73", "gene_name": "MYB73", "gene_names_uniprotkb": "MYB73; AP22.97; C7A10.100", "gene_names_refseq": "AP22.97; AP22_97; ATMYB73; MYB73; myb domain protein 73", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23160", "url": "https://www.uniprot.org/uniprotkb/O23160" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O23160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23160" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O23160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23160", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSCRLRWCNQLSPEVEHRAF", "down_seq": "QEEDETIIRAHARFGNKWAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O23160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O23160" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser69" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "69", "end_pos": "69" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O23507-1.338.338", "start_pos": 338, "end_pos": 338, "uniprot_canonical_ac": "O23507-1", "length": 364, "uniprot_id": "1MMP_ARATH", "protein_name": "Metalloendoproteinase 1-MMP", "refseq_ac": "NP_193397", "refseq_name": "Matrixin family protein", "gene_name": "1MMP", "gene_names_uniprotkb": "1MMP; dl4345c", "gene_names_refseq": "DL4345C; FCAALL.425", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23507", "url": "https://www.uniprot.org/uniprotkb/O23507" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O23507", "url": "https://www.uniprot.org/uniprotkb/O23507", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YGPNPKLRLDSLTQSEDSIK", "down_seq": "GTVSHRFLSGNFIGYVLLVV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn338", "evidence": [ { "id": "O23507", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23507#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "338", "end_pos": "338" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O23507-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "O23507-1", "length": 364, "uniprot_id": "1MMP_ARATH", "protein_name": "Metalloendoproteinase 1-MMP", "refseq_ac": "NP_193397", "refseq_name": "Matrixin family protein", "gene_name": "1MMP", "gene_names_uniprotkb": "1MMP; dl4345c", "gene_names_refseq": "DL4345C; FCAALL.425", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O23507", "url": "https://www.uniprot.org/uniprotkb/O23507" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O23507", "url": "https://www.uniprot.org/uniprotkb/O23507", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RNTPEAEQSTAKATQIIHVS", "down_seq": "STWHDFSRLVDVQIGSHVSG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn49", "evidence": [ { "id": "O23507", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O23507#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "338", "end_pos": "338" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O24407-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "O24407-1", "length": 236, "uniprot_id": "IAA16_ARATH", "protein_name": "Auxin-responsive protein IAA16", "refseq_ac": "NP_187124", "refseq_name": "indoleacetic acid-induced protein 16", "gene_name": "IAA16", "gene_names_uniprotkb": "IAA16; F7O18.22", "gene_names_refseq": "F7O18.22; F7O18_22; IAA16; indoleacetic acid-induced protein 16", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O24407", "url": "https://www.uniprot.org/uniprotkb/O24407" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O24407", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O24407" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "O24407", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O24407", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PAKAQVVGWPPVRSFRKNVM", "down_seq": "GQKPTTGDATEGNDKTSGSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O24407", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O24407" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser86" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "86", "end_pos": "86" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O24409-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "O24409-1", "length": 197, "uniprot_id": "IAA19_ARATH", "protein_name": "Auxin-responsive protein IAA19", "refseq_ac": "NP_188173", "refseq_name": "indole-3-acetic acid inducible 19", "gene_name": "IAA19", "gene_names_uniprotkb": "IAA19; MJK13.20; MSG2", "gene_names_refseq": "IAA19; MASSUGU 2; MJK13.22; MSG2; indole-3-acetic acid inducible 19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O24409", "url": "https://www.uniprot.org/uniprotkb/O24409" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O24409", "url": "https://www.uniprot.org/uniprotkb/O24409", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "SSGGDAEKVNDSPAAKSQVV", "down_seq": "WPPVCSYRKKNSCKEASTTK", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "R", "comment": "In msg2-2; gain of function. Affects auxin-related developmental processes.", "evidence": [ { "database": "UniProtKB", "id": "O24409", "url": "https://www.uniprot.org/uniprotkb/O24409" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "73", "end_pos": "73" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O24409-1.75.75", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O24409-1.76.76", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O24409-1.75.75", "start_pos": 75, "end_pos": 75, "uniprot_canonical_ac": "O24409-1", "length": 197, "uniprot_id": "IAA19_ARATH", "protein_name": "Auxin-responsive protein IAA19", "refseq_ac": "NP_188173", "refseq_name": "indole-3-acetic acid inducible 19", "gene_name": "IAA19", "gene_names_uniprotkb": "IAA19; MJK13.20; MSG2", "gene_names_refseq": "IAA19; MASSUGU 2; MJK13.22; MSG2; indole-3-acetic acid inducible 19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O24409", "url": "https://www.uniprot.org/uniprotkb/O24409" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O24409", "url": "https://www.uniprot.org/uniprotkb/O24409", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "GGDAEKVNDSPAAKSQVVGW", "down_seq": "PVCSYRKKNSCKEASTTKVG", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "L", "comment": "In msg2-4; gain of function. Affects auxin-related developmental processes.", "evidence": [ { "database": "UniProtKB", "id": "O24409", "url": "https://www.uniprot.org/uniprotkb/O24409" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "73", "end_pos": "73" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O24409-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O24409-1.76.76", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O24409-1.76.76", "start_pos": 76, "end_pos": 76, "uniprot_canonical_ac": "O24409-1", "length": 197, "uniprot_id": "IAA19_ARATH", "protein_name": "Auxin-responsive protein IAA19", "refseq_ac": "NP_188173", "refseq_name": "indole-3-acetic acid inducible 19", "gene_name": "IAA19", "gene_names_uniprotkb": "IAA19; MJK13.20; MSG2", "gene_names_refseq": "IAA19; MASSUGU 2; MJK13.22; MSG2; indole-3-acetic acid inducible 19", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O24409", "url": "https://www.uniprot.org/uniprotkb/O24409" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O24409", "url": "https://www.uniprot.org/uniprotkb/O24409", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "GDAEKVNDSPAAKSQVVGWP", "down_seq": "VCSYRKKNSCKEASTTKVGL", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "L", "comment": "In msg2-3; gain of function. Affects auxin-related developmental processes.", "evidence": [ { "database": "UniProtKB", "id": "O24409", "url": "https://www.uniprot.org/uniprotkb/O24409" } ] }, { "sequence_org": "P", "sequence_mut": "S", "comment": "In msg2-1; gain of function. Affects auxin-related developmental processes.", "evidence": [ { "database": "UniProtKB", "id": "O24409", "url": "https://www.uniprot.org/uniprotkb/O24409" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "73", "end_pos": "73" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "76", "end_pos": "76" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O24409-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O24409-1.75.75", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O48814-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] }, { "title": "BIK1 interacts with PEPRs to mediate ethylene-induced immunity.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-04-09", "authors": "Liu Zixu, Wu Ying, Yang Fan, Zhang Yiyue, Chen She, Xie Qi, Tian Xingjun, Zhou Jian-Min", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "WLDESTLTPTKPGTGLVIAV", "down_seq": "KLNQEGFQGHREWLTEINYL", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of kinase activity; when associated with A-106.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] }, { "sequence_org": "K", "sequence_mut": "E", "comment": "Loss of autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O48814-1.89.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O48814-1.89.89", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O48814-1.90.90", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O48814-1.95.95", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.106.106", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.120.120", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] }, { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LDESTLTPTKPGTGLVIAVK", "down_seq": "LNQEGFQGHREWLTEINYLG", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of kinase activity; when associated with A-105.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] }, { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O48814-1.89.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O48814-1.89.89", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O48814-1.90.90", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O48814-1.95.95", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.105.105", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O48814-1.120.120", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.120.120", "start_pos": 120, "end_pos": 120, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Receptor-like Cytoplasmic Kinase BIK1 Localizes to the Nucleus and Regulates Defense Hormone Expression during Plant Innate Immunity.", "journal": "Cell host & microbe", "date": "2018-04-11", "authors": "Lal Neeraj K, Nagalakshmi Ugrappa, Hurlburt Nicholas K, Flores Rosalva, Bak Aurelie, Sone Pyae, Ma Xiyu, Song Gaoyuan, Walley Justin, Shan Libo, He Ping, Casteel Clare, Fisher Andrew J, Dinesh-Kumar Savithramma P", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LVIAVKKLNQEGFQGHREWL", "down_seq": "EINYLGQLSHPNLVKLIGYC", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Normal sensitivity toward elf18-mediated growth inhibition. Normal sensitivity toward elf18-mediated growth inhibition; when associated with A-129.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by EFR", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ], "site_lbl": "Thr120" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O48814-1.105.105", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O48814-1.106.106", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O48814-1.129.129", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Receptor-like Cytoplasmic Kinase BIK1 Localizes to the Nucleus and Regulates Defense Hormone Expression during Plant Innate Immunity.", "journal": "Cell host & microbe", "date": "2018-04-11", "authors": "Lal Neeraj K, Nagalakshmi Ugrappa, Hurlburt Nicholas K, Flores Rosalva, Bak Aurelie, Sone Pyae, Ma Xiyu, Song Gaoyuan, Walley Justin, Shan Libo, He Ping, Casteel Clare, Fisher Andrew J, Dinesh-Kumar Savithramma P", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ] }, { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QEGFQGHREWLTEINYLGQL", "down_seq": "HPNLVKLIGYCLEDEHRLLV", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Normal sensitivity toward elf18-mediated growth inhibition. Normal sensitivity toward elf18-mediated growth inhibition; when associated with A-120.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser129" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by EFR", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ], "site_lbl": "Ser129" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O48814-1.120.120", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of protein kinase complex BAK1/BIK1 mediates Arabidopsis innate immunity.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2014-03-04", "authors": "Lin Wenwei, Li Bo, Lu Dongping, Chen Sixue, Zhu Ning, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660" } ] }, { "title": "Comparing Arabidopsis receptor kinase and receptor protein-mediated immune signaling reveals BIK1-dependent differences.", "journal": "The New phytologist", "date": "2019-03", "authors": "Wan Wei-Lin, Zhang Lisha, Pruitt Rory, Zaidem Maricris, Brugman Rik, Ma Xiyu, Krol Elzbieta, Perraki Artemis, Kilian Joachim, Grossmann Guido, Stahl Mark, Shan Libo, Zipfel Cyril, van Kan Jan A L, Hedrich Rainer, Weigel Detlef, Gust Andrea A, N\u00fcrnberger Thorsten", "evidence": [ { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30252144", "url": "https://glygen.org/publication/PubMed/30252144" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30252144", "url": "https://glygen.org/publication/PubMed/30252144", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HPNLVKLIGYCLEDEHRLLV", "down_seq": "EFMQKGSLENHLFRRGAYFK", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of function in innate immunity.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30252144", "url": "https://glygen.org/publication/PubMed/30252144" } ], "site_lbl": "Tyr150" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "O48814-1.168.168", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O48814-1.170.170", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.170.170", "start_pos": 170, "end_pos": 170, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "YEFMQKGSLENHLFRRGAYF", "down_seq": "PLPWFLRVNVALDAAKGLAF", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired flg22-induced ubiquitination, internalization of BIK1 and FLS2 from the plasma membrane and reactive oxygen species (ROS) production, as well as enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000 and to the fungal pathogen Botrytis cinerea, but normal phosphorylation; when associated with R-31, R-41, R-95, R-186, R-286, R-337, R-358 and R-366.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O48814-1.150.150", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.168.168", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.186.186", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.186.186", "start_pos": 186, "end_pos": 186, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "GAYFKPLPWFLRVNVALDAA", "down_seq": "GLAFLHSDPVKVIYRDIKAS", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired flg22-induced ubiquitination, internalization of BIK1 and FLS2 from the plasma membrane and reactive oxygen species (ROS) production, as well as enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000 and to the fungal pathogen Botrytis cinerea, but normal phosphorylation; when associated with R-31, R-41, R-95, R-170, R-286, R-337, R-358 and R-366.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O48814-1.168.168", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O48814-1.170.170", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O48814-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.202.202", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O48814-1.204.204", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O48814-1.206.206", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.202.202", "start_pos": 202, "end_pos": 202, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "LDAAKGLAFLHSDPVKVIYR", "down_seq": "IKASNILLDADYNAKLSDFG", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O48814-1.186.186", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O48814-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.204.204", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O48814-1.206.206", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O48814-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.219.219", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.204.204", "start_pos": 204, "end_pos": 204, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "AAKGLAFLHSDPVKVIYRDI", "down_seq": "ASNILLDADYNAKLSDFGLA", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Compromised flg22-induced ubiquitination and reduced phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O48814-1.186.186", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O48814-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.202.202", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.206.206", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O48814-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.219.219", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] }, { "title": "Phosphorylation of receptor-like cytoplasmic kinases by bacterial flagellin.", "journal": "Plant signaling & behavior", "date": "2010-05", "authors": "Lu Dongping, Wu Shujing, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "20404519", "url": "https://glygen.org/publication/PubMed/20404519" } ] }, { "title": "A receptor-like cytoplasmic kinase, BIK1, associates with a flagellin receptor complex to initiate plant innate immunity.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010-01-05", "authors": "Lu Dongping, Wu Shujing, Gao Xiquan, Zhang Yulan, Shan Libo, He Ping", "evidence": [ { "database": "iPTMnet", "id": "O48814-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814-1" } ], "reference": [ { "type": "PubMed", "id": "20018686", "url": "https://glygen.org/publication/PubMed/20018686" } ] }, { "title": "BIK1 interacts with PEPRs to mediate ethylene-induced immunity.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-04-09", "authors": "Liu Zixu, Wu Ying, Yang Fan, Zhang Yiyue, Chen She, Xie Qi, Tian Xingjun, Zhou Jian-Min", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184" } ] }, { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20404519", "url": "https://glygen.org/publication/PubMed/20404519", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O48814", "database": "PRO", "categories": [ "Other" ] }, { "id": "20018686", "url": "https://glygen.org/publication/PubMed/20018686", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLSDFGLARDGPMGDLSYVS", "down_seq": "RVMGTYGYAAPEYMSSGHLN", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Compromised flg22-induced ubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Thr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "20404519", "url": "https://glygen.org/publication/PubMed/20404519" } ], "site_lbl": "Thr237" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by autocatalysis and BAK1; alternate", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PRO", "id": "O48814", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "20018686", "url": "https://glygen.org/publication/PubMed/20018686" }, { "database": "PubMed", "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" }, { "database": "PubMed", "id": "20404519", "url": "https://glygen.org/publication/PubMed/20404519" } ], "site_lbl": "Thr237" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O48814-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O48814-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O48814-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O48814-1.243.243", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O48814-1.250.250", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.252.252", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.253.253", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.243.243", "start_pos": 243, "end_pos": 243, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine phosphorylation of protein kinase complex BAK1/BIK1 mediates Arabidopsis innate immunity.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2014-03-04", "authors": "Lin Wenwei, Li Bo, Lu Dongping, Chen Sixue, Zhu Ning, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660" } ] }, { "title": "Comparing Arabidopsis receptor kinase and receptor protein-mediated immune signaling reveals BIK1-dependent differences.", "journal": "The New phytologist", "date": "2019-03", "authors": "Wan Wei-Lin, Zhang Lisha, Pruitt Rory, Zaidem Maricris, Brugman Rik, Ma Xiyu, Krol Elzbieta, Perraki Artemis, Kilian Joachim, Grossmann Guido, Stahl Mark, Shan Libo, Zipfel Cyril, van Kan Jan A L, Hedrich Rainer, Weigel Detlef, Gust Andrea A, N\u00fcrnberger Thorsten", "evidence": [ { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30252144", "url": "https://glygen.org/publication/PubMed/30252144" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30252144", "url": "https://glygen.org/publication/PubMed/30252144", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LARDGPMGDLSYVSTRVMGT", "down_seq": "GYAAPEYMSSGHLNARSDVY", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of function in innate immunity.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30252144", "url": "https://glygen.org/publication/PubMed/30252144" } ], "site_lbl": "Tyr243" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O48814-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O48814-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O48814-1.237.237", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O48814-1.250.250", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O48814-1.252.252", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O48814-1.253.253", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.250.250", "start_pos": 250, "end_pos": 250, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] }, { "title": "Tyrosine phosphorylation of protein kinase complex BAK1/BIK1 mediates Arabidopsis innate immunity.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2014-03-04", "authors": "Lin Wenwei, Li Bo, Lu Dongping, Chen Sixue, Zhu Ning, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660" } ] }, { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "Comparing Arabidopsis receptor kinase and receptor protein-mediated immune signaling reveals BIK1-dependent differences.", "journal": "The New phytologist", "date": "2019-03", "authors": "Wan Wei-Lin, Zhang Lisha, Pruitt Rory, Zaidem Maricris, Brugman Rik, Ma Xiyu, Krol Elzbieta, Perraki Artemis, Kilian Joachim, Grossmann Guido, Stahl Mark, Shan Libo, Zipfel Cyril, van Kan Jan A L, Hedrich Rainer, Weigel Detlef, Gust Andrea A, N\u00fcrnberger Thorsten", "evidence": [ { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30252144", "url": "https://glygen.org/publication/PubMed/30252144" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30252144", "url": "https://glygen.org/publication/PubMed/30252144", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GDLSYVSTRVMGTYGYAAPE", "down_seq": "MSSGHLNARSDVYSFGVLLL", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Compromised flg22-induced ubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] }, { "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of function in innate immunity.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Tyr250" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30252144", "url": "https://glygen.org/publication/PubMed/30252144" }, { "database": "PubMed", "id": "24532660", "url": "https://glygen.org/publication/PubMed/24532660" } ], "site_lbl": "Tyr250" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O48814-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O48814-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O48814-1.237.237", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O48814-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O48814-1.243.243", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.252.252", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O48814-1.253.253", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.286.286", "start_pos": 286, "end_pos": 286, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "GVLLLEILSGKRALDHNRPA", "down_seq": "EENLVDWARPYLTSKRKVLL", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired flg22-induced ubiquitination, internalization of BIK1 and FLS2 from the plasma membrane and reactive oxygen species (ROS) production, as well as enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000 and to the fungal pathogen Botrytis cinerea, but normal phosphorylation; when associated with R-31, R-41, R-95, R-170, R-186, R-337, R-358 and R-366.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] }, { "title": "Microbe-associated molecular pattern-induced calcium signaling requires the receptor-like cytoplasmic kinases, PBL1 and BIK1.", "journal": "BMC plant biology", "date": "2014-12-19", "authors": "Ranf Stefanie, Eschen-Lippold Lennart, Fr\u00f6hlich Katja, Westphal Lore, Scheel Dierk, Lee Justin", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "25522736", "url": "https://glygen.org/publication/PubMed/25522736" } ] }, { "title": "Regulatory role of BOTRYTIS INDUCED KINASE1 in ETHYLENE INSENSITIVE3-dependent gene expression in Arabidopsis.", "journal": "Plant cell reports", "date": "2015-09", "authors": "Kang Geun-Ho, Son Seungmin, Cho Young-Hee, Yoo Sang-Dong", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "26021844", "url": "https://glygen.org/publication/PubMed/26021844" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25522736", "url": "https://glygen.org/publication/PubMed/25522736", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26021844", "url": "https://glygen.org/publication/PubMed/26021844", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "M", "down_seq": "SCFSSRVKADIFHNGKSSDL", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Mis-localization and impaired phosphorylation and ubiquitination upon flagellin (flg22) treatment, but conserved kinase activity and autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" }, { "database": "PubMed", "id": "25522736", "url": "https://glygen.org/publication/PubMed/25522736" } ] }, { "sequence_org": "G", "sequence_mut": "S", "comment": "Drastic reduction of plasma membrane localization and strong increase of cytoplasmic localization.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "26021844", "url": "https://glygen.org/publication/PubMed/26021844" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "ADIFHNGKSSDLYGLSLSSR", "down_seq": "SSSTVAAAQKTEGEILSSTP", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired flg22-induced ubiquitination, internalization of BIK1 and FLS2 from the plasma membrane and reactive oxygen species (ROS) production, as well as enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000 and to the fungal pathogen Botrytis cinerea, but normal phosphorylation; when associated with R-41, R-95, R-170, R-186, R-286, R-337, R-358 and R-366.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O48814-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O48814-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O48814-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.337.337", "start_pos": 337, "end_pos": 337, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LPEEAVRMASVAVQCLSFEP", "down_seq": "SRPTMDQVVRALQQLQDNLG", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired flg22-induced ubiquitination, internalization of BIK1 and FLS2 from the plasma membrane and reactive oxygen species (ROS) production, as well as enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000 and to the fungal pathogen Botrytis cinerea, but normal phosphorylation; when associated with R-31, R-41, R-95, R-170, R-186, R-286, R-358 and R-366.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O48814-1.341.341", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.358.358", "start_pos": 358, "end_pos": 358, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "SRPTMDQVVRALQQLQDNLG", "down_seq": "PSQTNPVKDTKKLGFKTGTT", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired flg22-induced ubiquitination, internalization of BIK1 and FLS2 from the plasma membrane and reactive oxygen species (ROS) production, as well as enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000 and to the fungal pathogen Botrytis cinerea, but normal phosphorylation; when associated with R-31, R-41, R-95, R-170, R-186, R-286, R-337 and R-366.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O48814-1.341.341", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.360.360", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O48814-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O48814-1.366.366", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O48814-1.368.368", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.375.375", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O48814-1.377.377", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.366.366", "start_pos": 366, "end_pos": 366, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "VRALQQLQDNLGKPSQTNPV", "down_seq": "DTKKLGFKTGTTKSSEKRFT", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired flg22-induced ubiquitination, internalization of BIK1 and FLS2 from the plasma membrane and reactive oxygen species (ROS) production, as well as enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000 and to the fungal pathogen Botrytis cinerea, but normal phosphorylation; when associated with R-31, R-41, R-95, R-170, R-186, R-286, R-337 and R-358.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O48814-1.358.358", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O48814-1.360.360", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O48814-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.368.368", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O48814-1.375.375", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O48814-1.377.377", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "DLYGLSLSSRKSSSTVAAAQ", "down_seq": "TEGEILSSTPVKSFTFNELK", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired flg22-induced ubiquitination, internalization of BIK1 and FLS2 from the plasma membrane and reactive oxygen species (ROS) production, as well as enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000 and to the fungal pathogen Botrytis cinerea, but normal phosphorylation; when associated with R-31, R-95, R-170, R-186, R-286, R-337, R-358 and R-366.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O48814-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O48814-1.31.31", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O48814-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O48814-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O48814-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O48814-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O48814-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.89.90", "start_pos": 89, "end_pos": 90, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Receptor-like Cytoplasmic Kinase BIK1 Localizes to the Nucleus and Regulates Defense Hormone Expression during Plant Innate Immunity.", "journal": "Cell host & microbe", "date": "2018-04-11", "authors": "Lal Neeraj K, Nagalakshmi Ugrappa, Hurlburt Nicholas K, Flores Rosalva, Bak Aurelie, Sone Pyae, Ma Xiyu, Song Gaoyuan, Walley Justin, Shan Libo, He Ping, Casteel Clare, Fisher Andrew J, Dinesh-Kumar Savithramma P", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "ST", "start_aa": "S", "up_seq": "PDSVIGEGGFGCVFKGWLDE", "down_seq": "LTPTKPGTGLVIAVKKLNQE", "mutagenesis": [ { "sequence_org": "ST", "sequence_mut": "AA", "comment": "Impaired sensitivity toward elf18-mediated growth inhibition and increased sensitivity to Pseudomonas syringae pv. tomato (Pst) DC3000 bacteria, but no growth defect in normal conditions and normal mitogen-activated protein kinases (MAPKs) activation during EFR-mediated signaling. Enhanced interaction with the WRKY transcription factors WRKY33, WRKY50, WRKY51 and WRKY57 involved in the regulation of jasmonic acid (JA) and salicylic acid (SA) biosynthesis.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ] }, { "sequence_org": "ST", "sequence_mut": "DD", "comment": "Phosphomimetic, associated with an increased sensitivity toward elf18-mediated growth inhibition and an enhanced resistance to Pseudomonas syringae pv. tomato (Pst) DC3000 bacteria despite a normal mitogen-activated protein kinases (MAPKs) activation during EFR-mediated signaling. Growth defect in normal conditions. Reduced interaction with EFR. Increased jasmonic acid (JA) and salicylic acid (SA) levels. Reduced interaction with and phosphorylation of the WRKY transcription factors WRKY33, WRKY50, WRKY51 and WRKY57 involved in the regulation of jasmonic acid (JA) and salicylic acid (SA) biosynthesis.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O48814-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.89.89", "categories": [ "phosphorylation_flag" ] }, { "distance": 0, "direction": "upstream", "id": "O48814-1.90.90", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O48814-1.95.95", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.105.105", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.106.106", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ligand-induced monoubiquitination of BIK1 regulates plant immunity.", "journal": "Nature", "date": "2020-05", "authors": "Ma Xiyu, Claus Lucas A N, Leslie Michelle E, Tao Kai, Wu Zhiping, Liu Jun, Yu Xiao, Li Bo, Zhou Jinggeng, Savatin Daniel V, Peng Junmin, Tyler Brett M, Heese Antje, Russinova Eugenia, He Ping, Shan Libo", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "reference": [ { "type": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "EGGFGCVFKGWLDESTLTPT", "down_seq": "PGTGLVIAVKKLNQEGFQGH", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Impaired flg22-induced ubiquitination, internalization of BIK1 and FLS2 from the plasma membrane and reactive oxygen species (ROS) production, as well as enhanced susceptibility to the bacterial pathogen Pseudomonas syringae pv. tomato (Pst) DC3000 and to the fungal pathogen Botrytis cinerea, but normal phosphorylation; when associated with R-31, R-41, R-170, R-186, R-286, R-337, R-358 and R-366.", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "32404997", "url": "https://glygen.org/publication/PubMed/32404997" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O48814-1.89.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O48814-1.89.89", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O48814-1.90.90", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O48814-1.105.105", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O48814-1.106.106", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.168.168", "start_pos": 168, "end_pos": 168, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LVYEFMQKGSLENHLFRRGA", "down_seq": "FKPLPWFLRVNVALDAAKGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Tyr168" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ], "site_lbl": "Tyr168" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O48814-1.150.150", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.170.170", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O48814-1.186.186", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PWFLRVNVALDAAKGLAFLH", "down_seq": "DPVKVIYRDIKASNILLDAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O48814-1.186.186", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O48814-1.202.202", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O48814-1.204.204", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O48814-1.206.206", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KGLAFLHSDPVKVIYRDIKA", "down_seq": "NILLDADYNAKLSDFGLARD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser206" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis and BAK1", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser206" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O48814-1.186.186", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O48814-1.193.193", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O48814-1.202.202", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.204.204", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O48814-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O48814-1.219.219", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DPVKVIYRDIKASNILLDAD", "down_seq": "NAKLSDFGLARDGPMGDLSY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Tyr214" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "site_lbl": "Tyr214" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O48814-1.202.202", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O48814-1.204.204", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O48814-1.206.206", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O48814-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O48814-1.233.233", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IYRDIKASNILLDADYNAKL", "down_seq": "DFGLARDGPMGDLSYVSTRV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Ser219" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O48814-1.202.202", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O48814-1.204.204", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O48814-1.206.206", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O48814-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O48814-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O48814-1.237.237", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "BIK1 interacts with PEPRs to mediate ethylene-induced immunity.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-04-09", "authors": "Liu Zixu, Wu Ying, Yang Fan, Zhang Yiyue, Chen She, Xie Qi, Tian Xingjun, Zhou Jian-Min", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184" } ] }, { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DYNAKLSDFGLARDGPMGDL", "down_seq": "YVSTRVMGTYGYAAPEYMSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184" } ], "site_lbl": "Ser233" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ], "site_lbl": "Ser233" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O48814-1.214.214", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O48814-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O48814-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O48814-1.237.237", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O48814-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O48814-1.243.243", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.250.250", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O48814-1.252.252", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O48814-1.253.253", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.236.236", "start_pos": 236, "end_pos": 236, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector.", "journal": "Cell host & microbe", "date": "2010-04-22", "authors": "Zhang Jie, Li Wei, Xiang Tingting, Liu Zixu, Laluk Kristin, Ding Xiaojun, Zou Yan, Gao Minghui, Zhang Xiaojuan, Chen She, Mengiste Tesfaye, Zhang Yuelin, Zhou Jian-Min", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "20413097", "url": "https://glygen.org/publication/PubMed/20413097" } ] }, { "title": "BIK1 interacts with PEPRs to mediate ethylene-induced immunity.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-04-09", "authors": "Liu Zixu, Wu Ying, Yang Fan, Zhang Yiyue, Chen She, Xie Qi, Tian Xingjun, Zhou Jian-Min", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184" } ] }, { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20413097", "url": "https://glygen.org/publication/PubMed/20413097", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKLSDFGLARDGPMGDLSYV", "down_seq": "TRVMGTYGYAAPEYMSSGHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "20413097", "url": "https://glygen.org/publication/PubMed/20413097" } ], "site_lbl": "Ser236" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis and BAK1; alternate", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "23431184", "url": "https://glygen.org/publication/PubMed/23431184" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "PubMed", "id": "20413097", "url": "https://glygen.org/publication/PubMed/20413097" } ], "site_lbl": "Ser236" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O48814-1.219.219", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O48814-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.237.237", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O48814-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O48814-1.243.243", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O48814-1.250.250", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.252.252", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.253.253", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.242.242", "start_pos": 242, "end_pos": 242, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLARDGPMGDLSYVSTRVMG", "down_seq": "YGYAAPEYMSSGHLNARSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Thr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Thr242" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by autocatalysis and BAK1", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Thr242" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O48814-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O48814-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O48814-1.237.237", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.243.243", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O48814-1.250.250", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O48814-1.252.252", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O48814-1.253.253", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.252.252", "start_pos": 252, "end_pos": 252, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSYVSTRVMGTYGYAAPEYM", "down_seq": "SGHLNARSDVYSFGVLLLEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser252" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "site_lbl": "Ser252" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O48814-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O48814-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O48814-1.237.237", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O48814-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O48814-1.243.243", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.250.250", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.253.253", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.253.253", "start_pos": 253, "end_pos": 253, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SYVSTRVMGTYGYAAPEYMS", "down_seq": "GHLNARSDVYSFGVLLLEIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser253" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "site_lbl": "Ser253" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O48814-1.233.233", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O48814-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O48814-1.237.237", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O48814-1.242.242", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O48814-1.243.243", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O48814-1.250.250", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.252.252", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSRVKADIFHNGKSSDLYGL", "down_seq": "LSSRKSSSTVAAAQKTEGEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O48814-1.31.31", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O48814-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O48814-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O48814-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O48814-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.314.314", "start_pos": 314, "end_pos": 314, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ARPYLTSKRKVLLIVDNRLD", "down_seq": "QYLPEEAVRMASVAVQCLSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Thr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Thr314" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ], "site_lbl": "Thr314" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DIFHNGKSSDLYGLSLSSRK", "down_seq": "SSTVAAAQKTEGEILSSTPV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O48814-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.31.31", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O48814-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IFHNGKSSDLYGLSLSSRKS", "down_seq": "STVAAAQKTEGEILSSTPVK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Ser33" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O48814-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.31.31", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.341.341", "start_pos": 341, "end_pos": 341, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AVRMASVAVQCLSFEPKSRP", "down_seq": "MDQVVRALQQLQDNLGKPSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Thr341" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O48814-1.337.337", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.358.358", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O48814-1.360.360", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FHNGKSSDLYGLSLSSRKSS", "down_seq": "TVAAAQKTEGEILSSTPVKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Ser34" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O48814-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O48814-1.31.31", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O48814-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.35.35", "start_pos": 35, "end_pos": 35, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "HNGKSSDLYGLSLSSRKSSS", "down_seq": "VAAAQKTEGEILSSTPVKSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Thr35" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O48814-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O48814-1.31.31", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O48814-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O48814-1.54.54", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.360.360", "start_pos": 360, "end_pos": 360, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTMDQVVRALQQLQDNLGKP", "down_seq": "QTNPVKDTKKLGFKTGTTKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser360" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis and BAK1", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser360" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O48814-1.341.341", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.358.358", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O48814-1.366.366", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O48814-1.368.368", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.375.375", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.377.377", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.362.362", "start_pos": 362, "end_pos": 362, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MDQVVRALQQLQDNLGKPSQ", "down_seq": "NPVKDTKKLGFKTGTTKSSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Thr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Thr362" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by autocatalysis and BAK1", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Thr362" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O48814-1.358.358", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.360.360", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O48814-1.366.366", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O48814-1.368.368", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O48814-1.375.375", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.377.377", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.368.368", "start_pos": 368, "end_pos": 368, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ALQQLQDNLGKPSQTNPVKD", "down_seq": "KKLGFKTGTTKSSEKRFTQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Thr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Thr368" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by autocatalysis and BAK1", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Thr368" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O48814-1.358.358", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O48814-1.360.360", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O48814-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.366.366", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O48814-1.375.375", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O48814-1.377.377", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.375.375", "start_pos": 375, "end_pos": 375, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NLGKPSQTNPVKDTKKLGFK", "down_seq": "GTTKSSEKRFTQKPFGRHLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Thr375" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O48814-1.358.358", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O48814-1.360.360", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O48814-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O48814-1.366.366", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O48814-1.368.368", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.377.377", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.377.377", "start_pos": 377, "end_pos": 377, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GKPSQTNPVKDTKKLGFKTG", "down_seq": "TKSSEKRFTQKPFGRHLV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Thr377" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O48814-1.358.358", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O48814-1.360.360", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O48814-1.362.362", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O48814-1.366.366", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O48814-1.368.368", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.375.375", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LYGLSLSSRKSSSTVAAAQK", "down_seq": "EGEILSSTPVKSFTFNELKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Thr42" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O48814-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O48814-1.31.31", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O48814-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O48814-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O48814-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O48814-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "O48814-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O48814-1.56.56", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSRKSSSTVAAAQKTEGEIL", "down_seq": "STPVKSFTFNELKLATRNFR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser48" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis and BAK1", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser48" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O48814-1.31.31", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O48814-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O48814-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O48814-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O48814-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O48814-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O48814-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.64.64", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RKSSSTVAAAQKTEGEILSS", "down_seq": "PVKSFTFNELKLATRNFRPD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Thr50" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O48814-1.31.31", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "downstream", "id": "O48814-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "O48814-1.33.33", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "O48814-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O48814-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O48814-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O48814-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O48814-1.64.64", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "STVAAAQKTEGEILSSTPVK", "down_seq": "FTFNELKLATRNFRPDSVIG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser54" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ], "site_lbl": "Ser54" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O48814-1.34.34", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "O48814-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "downstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O48814-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O48814-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.71.71", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.56.56", "start_pos": 56, "end_pos": 56, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VAAAQKTEGEILSSTPVKSF", "down_seq": "FNELKLATRNFRPDSVIGEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Thr", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Thr56" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ], "site_lbl": "Thr56" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O48814-1.41.41", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O48814-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O48814-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O48814-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.71.71", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GEILSSTPVKSFTFNELKLA", "down_seq": "RNFRPDSVIGEGGFGCVFKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "site_lbl": "Thr64" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O48814-1.48.48", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "O48814-1.50.50", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O48814-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O48814-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O48814-1.71.71", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.", "journal": "Protein & cell", "date": "2013-10", "authors": "Xu Jinhua, Wei Xiaochao, Yan Limin, Liu Dan, Ma Yuanyuan, Guo Yu, Peng Chune, Zhou Honggang, Yang Cheng, Lou Zhiyong, Shui Wenqing", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.", "journal": "Cell host & microbe", "date": "2018-09-12", "authors": "Zhang Meixiang, Chiang Yi-Hsuan, Toru\u00f1o Tania Y, Lee DongHyuk, Ma Miaomiao, Liang Xiangxiu, Lal Neeraj K, Lemos Mark, Lu Yi-Ju, Ma Shisong, Liu Jun, Day Brad, Dinesh-Kumar Savithramma P, Dehesh Katayoon, Dou Daolong, Zhou Jian-Min, Coaker Gitta", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PVKSFTFNELKLATRNFRPD", "down_seq": "VIGEGGFGCVFKGWLDESTL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "O48814-1", "kinase_gene_name": "BIK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser71" }, { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by autocatalysis and BAK1", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "30212650", "url": "https://glygen.org/publication/PubMed/30212650" }, { "database": "PubMed", "id": "24104392", "url": "https://glygen.org/publication/PubMed/24104392" } ], "site_lbl": "Ser71" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O48814-1.54.54", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "O48814-1.56.56", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O48814-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O48814-1.89.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O48814-1.89.89", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "O48814-1.90.90", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Receptor-like Cytoplasmic Kinase BIK1 Localizes to the Nucleus and Regulates Defense Hormone Expression during Plant Innate Immunity.", "journal": "Cell host & microbe", "date": "2018-04-11", "authors": "Lal Neeraj K, Nagalakshmi Ugrappa, Hurlburt Nicholas K, Flores Rosalva, Bak Aurelie, Sone Pyae, Ma Xiyu, Song Gaoyuan, Walley Justin, Shan Libo, He Ping, Casteel Clare, Fisher Andrew J, Dinesh-Kumar Savithramma P", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PDSVIGEGGFGCVFKGWLDE", "down_seq": "TLTPTKPGTGLVIAVKKLNQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by EFR", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ], "site_lbl": "Ser89" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O48814-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.89.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O48814-1.90.90", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O48814-1.95.95", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.105.105", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "O48814-1.106.106", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O48814-1.90.90", "start_pos": 90, "end_pos": 90, "uniprot_canonical_ac": "O48814-1", "length": 395, "uniprot_id": "BIK1_ARATH", "protein_name": "Serine/threonine-protein kinase BIK1", "refseq_ac": "NP_181496", "refseq_name": "botrytis-induced kinase1", "gene_name": "BIK1", "gene_names_uniprotkb": "BIK1; F12L6.32; F17A14.3", "gene_names_refseq": "BIK1; F12L6.32; F12L6_32; botrytis-induced kinase1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Receptor-like Cytoplasmic Kinase BIK1 Localizes to the Nucleus and Regulates Defense Hormone Expression during Plant Innate Immunity.", "journal": "Cell host & microbe", "date": "2018-04-11", "authors": "Lal Neeraj K, Nagalakshmi Ugrappa, Hurlburt Nicholas K, Flores Rosalva, Bak Aurelie, Sone Pyae, Ma Xiyu, Song Gaoyuan, Walley Justin, Shan Libo, He Ping, Casteel Clare, Fisher Andrew J, Dinesh-Kumar Savithramma P", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" } ], "reference": [ { "type": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ] } ], "crossref": [ { "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DSVIGEGGFGCVFKGWLDES", "down_seq": "LTPTKPGTGLVIAVKKLNQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by EFR", "evidence": [ { "database": "UniProtKB", "id": "O48814", "url": "https://www.uniprot.org/uniprotkb/O48814" }, { "database": "iPTMnet", "id": "O48814", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O48814" }, { "database": "PubMed", "id": "29649442", "url": "https://glygen.org/publication/PubMed/29649442" } ], "site_lbl": "Thr90" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "106", "end_pos": "106" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "170", "end_pos": "170" }, { "start_pos": "186", "end_pos": "186" }, { "start_pos": "202", "end_pos": "202" }, { "start_pos": "204", "end_pos": "204" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "358", "end_pos": "358" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "41", "end_pos": "41" }, { "start_pos": "89", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "120", "end_pos": "120" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "193", "end_pos": "193" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "219", "end_pos": "219" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "242", "end_pos": "242" }, { "start_pos": "243", "end_pos": "243" }, { "start_pos": "250", "end_pos": "250" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "314", "end_pos": "314" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "360", "end_pos": "360" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "368", "end_pos": "368" }, { "start_pos": "375", "end_pos": "375" }, { "start_pos": "377", "end_pos": "377" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "56", "end_pos": "56" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "71", "end_pos": "71" }, { "start_pos": "89", "end_pos": "89" }, { "start_pos": "90", "end_pos": "90" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O48814-1.71.71", "categories": [ "phosphorylation_flag" ] }, { "distance": 0, "direction": "downstream", "id": "O48814-1.89.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O48814-1.89.89", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O48814-1.95.95", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O48814-1.105.105", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O48814-1.106.106", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49545-1.123.123", "start_pos": 123, "end_pos": 123, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NLISGPIPPEISSLSGLRHL", "down_seq": "LSNNVFNGSFPDEISSGLVN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn123", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O49545-1.130.130", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.130.130", "start_pos": 130, "end_pos": 130, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PPEISSLSGLRHLNLSNNVF", "down_seq": "GSFPDEISSGLVNLRVLDVY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O49545-1.123.123", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.153.153", "start_pos": 153, "end_pos": 153, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FPDEISSGLVNLRVLDVYNN", "down_seq": "LTGDLPVSVTNLTQLRHLHL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn153", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "O49545-1.164.164", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.164.164", "start_pos": 164, "end_pos": 164, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LRVLDVYNNNLTGDLPVSVT", "down_seq": "LTQLRHLHLGGNYFAGKIPP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn164", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O49545-1.153.153", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.212.212", "start_pos": 212, "end_pos": 212, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IEYLAVSGNELVGKIPPEIG", "down_seq": "LTTLRELYIGYYNAFEDGLP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn212", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.237.237", "start_pos": 237, "end_pos": 237, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RELYIGYYNAFEDGLPPEIG", "down_seq": "LSELVRFDGANCGLTGEIPP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn237", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "MDLSNNMFTGEIPASFAELK", "down_seq": "LTLLNLFRNKLHGEIPEFIG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn312", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.346.346", "start_pos": 346, "end_pos": 346, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EIPEFIGDLPELEVLQLWEN", "down_seq": "FTGSIPQKLGENGKLNLVDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn346", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.420.420", "start_pos": 420, "end_pos": 420, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PDSLGKCESLTRIRMGENFL", "down_seq": "GSIPKGLFGLPKLTQVELQD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn420", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.477.477", "start_pos": 477, "end_pos": 477, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LGQISLSNNQLSGPLPPAIG", "down_seq": "FTGVQKLLLDGNKFQGPIPS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn477", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.557.557", "start_pos": 557, "end_pos": 557, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NELSGEIPNEITAMKILNYL", "down_seq": "LSRNHLVGSIPGSISSMQSL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn557", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.586.586", "start_pos": 586, "end_pos": 586, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SIPGSISSMQSLTSLDFSYN", "down_seq": "LSGLVPGTGQFSYFNYTSFL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn586", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "O49545-1.601.601", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.601.601", "start_pos": 601, "end_pos": 601, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DFSYNNLSGLVPGTGQFSYF", "down_seq": "YTSFLGNPDLCGPYLGPCKD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn601", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O49545-1.586.586", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.80.80", "start_pos": 80, "end_pos": 80, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IGVTCDVSRRHVTSLDLSGL", "down_seq": "LSGTLSPDVSHLRLLQNLSL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn80", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "O49545-1.97.97", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.97.97", "start_pos": 97, "end_pos": 97, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGLNLSGTLSPDVSHLRLLQ", "down_seq": "LSLAENLISGPIPPEISSLS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn97", "evidence": [ { "id": "O49545", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O49545#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "O49545-1.80.80", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.722.722", "start_pos": 722, "end_pos": 722, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.", "journal": "The Plant cell", "date": "2022-03-29", "authors": "Wang Wenping, Hu Chong, Li Xiaonan, Zhu Yafen, Tao Liang, Cui Yanwei, Deng Dingqian, Fan Xiaoxuan, Zhang Hong, Li Jia, Gou Xiaoping, Yi Jing", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "reference": [ { "type": "PubMed", "id": "34935965", "url": "https://glygen.org/publication/PubMed/34935965" } ] } ], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "34935965", "url": "https://glygen.org/publication/PubMed/34935965", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "KGGAGIVYKGVMPNGDLVAV", "down_seq": "RLAAMSRGSSHDHGFNAEIQ", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "Loss of kinase activity leading to impaired autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" }, { "database": "PubMed", "id": "34935965", "url": "https://glygen.org/publication/PubMed/34935965" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O49545-1.731.731", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49545-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SHTFTASRPISEFRALLSLK", "down_seq": "SLTGAGDDKNSPLSSWKVST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "site_lbl": "Thr34" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.686.686", "start_pos": 686, "end_pos": 686, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LKKASESRAWRLTAFQRLDF", "down_seq": "CDDVLDSLKEDNIIGKGGAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "site_lbl": "Thr686" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.731.731", "start_pos": 731, "end_pos": 731, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GVMPNGDLVAVKRLAAMSRG", "down_seq": "SHDHGFNAEIQTLGRIRHRH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser731" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O49545-1.722.722", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49545-1.769.769", "start_pos": 769, "end_pos": 769, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HRHIVRLLGFCSNHETNLLV", "down_seq": "EYMPNGSLGEVLHGKKGGHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "site_lbl": "Tyr769" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.807.807", "start_pos": 807, "end_pos": 807, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GHLHWDTRYKIALEAAKGLC", "down_seq": "LHHDCSPLIVHRDVKSNNIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "site_lbl": "Tyr807" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.855.855", "start_pos": 855, "end_pos": 855, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HVADFGLAKFLQDSGTSECM", "down_seq": "AIAGSYGYIAPEYAYTLKVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "site_lbl": "Ser855" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "O49545-1.863.863", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O49545-1.870.870", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O49545-1.871.871", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.863.863", "start_pos": 863, "end_pos": 863, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KFLQDSGTSECMSAIAGSYG", "down_seq": "IAPEYAYTLKVDEKSDVYSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "site_lbl": "Tyr863" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O49545-1.855.855", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O49545-1.870.870", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O49545-1.871.871", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.870.870", "start_pos": 870, "end_pos": 870, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TSECMSAIAGSYGYIAPEYA", "down_seq": "TLKVDEKSDVYSFGVVLLEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "site_lbl": "Tyr870" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O49545-1.855.855", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O49545-1.863.863", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O49545-1.871.871", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.871.871", "start_pos": 871, "end_pos": 871, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SECMSAIAGSYGYIAPEYAY", "down_seq": "LKVDEKSDVYSFGVVLLELV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "site_lbl": "Thr871" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O49545-1.855.855", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O49545-1.863.863", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O49545-1.870.870", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O49545-1.986.986", "start_pos": 986, "end_pos": 986, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TEIPKLPPSKDQPMTESAPE", "down_seq": "ELSPKSGVQSPPDLLNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser986" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O49545-1.989.989", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O49545-1.992.992", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O49545-1.996.996", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49545-1.989.989", "start_pos": 989, "end_pos": 989, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PKLPPSKDQPMTESAPESEL", "down_seq": "PKSGVQSPPDLLNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser989" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O49545-1.986.986", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O49545-1.992.992", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O49545-1.996.996", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49545-1.992.992", "start_pos": 992, "end_pos": 992, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" }, { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPSKDQPMTESAPESELSPK", "down_seq": "GVQSPPDLLNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser992" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O49545-1.986.986", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O49545-1.989.989", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O49545-1.996.996", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49545-1.996.996", "start_pos": 996, "end_pos": 996, "uniprot_canonical_ac": "O49545-1", "length": 1003, "uniprot_id": "BAME1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1", "refseq_ac": "NP_001190624", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM1", "gene_names_uniprotkb": "BAM1; F6H11.170; MPA24.5", "gene_names_refseq": "BAM1; BARELY ANY MERISTEM 1; MPA24.5; MPA24_5", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" }, { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DQPMTESAPESELSPKSGVQ", "down_seq": "PPDLLNL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O49545", "url": "https://www.uniprot.org/uniprotkb/O49545" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O49545", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49545" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser996" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "123", "end_pos": "123" }, { "start_pos": "130", "end_pos": "130" }, { "start_pos": "153", "end_pos": "153" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "237", "end_pos": "237" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "420", "end_pos": "420" }, { "start_pos": "477", "end_pos": "477" }, { "start_pos": "557", "end_pos": "557" }, { "start_pos": "586", "end_pos": "586" }, { "start_pos": "601", "end_pos": "601" }, { "start_pos": "80", "end_pos": "80" }, { "start_pos": "97", "end_pos": "97" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "722", "end_pos": "722" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "34", "end_pos": "34" }, { "start_pos": "686", "end_pos": "686" }, { "start_pos": "731", "end_pos": "731" }, { "start_pos": "769", "end_pos": "769" }, { "start_pos": "807", "end_pos": "807" }, { "start_pos": "855", "end_pos": "855" }, { "start_pos": "863", "end_pos": "863" }, { "start_pos": "870", "end_pos": "870" }, { "start_pos": "871", "end_pos": "871" }, { "start_pos": "986", "end_pos": "986" }, { "start_pos": "989", "end_pos": "989" }, { "start_pos": "992", "end_pos": "992" }, { "start_pos": "996", "end_pos": "996" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O49545-1.986.986", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O49545-1.989.989", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O49545-1.992.992", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49686-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "O49686-1", "length": 191, "uniprot_id": "PYR1_ARATH", "protein_name": "Abscisic acid receptor PYR1", "refseq_ac": "NP_193521", "refseq_name": "Polyketide cyclase/dehydrase and lipid transport superfamily protein", "gene_name": "PYR1", "gene_names_uniprotkb": "PYR1; ABIP6; RCAR11; T6K21.50", "gene_names_refseq": "PYR1; PYRABACTIN RESISTANCE 1; RCAR11; T6K21.50; T6K21_50; regulatory component of ABA receptor 11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural mechanism of abscisic acid binding and signaling by dimeric PYR1.", "journal": "Science (New York, N.Y.)", "date": "2009-12-04", "authors": "Nishimura Noriyuki, Hitomi Kenichi, Arvai Andrew S, Rambo Robert P, Hitomi Chiharu, Cutler Sean R, Schroeder Julian I, Getzoff Elizabeth D", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "reference": [ { "type": "PubMed", "id": "19933100", "url": "https://glygen.org/publication/PubMed/19933100" } ] } ], "crossref": [ { "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19933100", "url": "https://glygen.org/publication/PubMed/19933100", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "LDILDDERRVTGFSIIGGEH", "down_seq": "LTNYKSVTTVHRFEKENRIW", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "G", "comment": "Impaired ABA-mediated binding to PP2Cs.", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" }, { "database": "PubMed", "id": "19933100", "url": "https://glygen.org/publication/PubMed/19933100" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49686-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "O49686-1", "length": 191, "uniprot_id": "PYR1_ARATH", "protein_name": "Abscisic acid receptor PYR1", "refseq_ac": "NP_193521", "refseq_name": "Polyketide cyclase/dehydrase and lipid transport superfamily protein", "gene_name": "PYR1", "gene_names_uniprotkb": "PYR1; ABIP6; RCAR11; T6K21.50", "gene_names_refseq": "PYR1; PYRABACTIN RESISTANCE 1; RCAR11; T6K21.50; T6K21_50; regulatory component of ABA receptor 11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins.", "journal": "Science (New York, N.Y.)", "date": "2009-05-22", "authors": "Park Sang-Youl, Fung Pauline, Nishimura Noriyuki, Jensen Davin R, Fujii Hiroaki, Zhao Yang, Lumba Shelley, Santiago Julia, Rodrigues Americo, Chow Tsz-Fung F, Alfred Simon E, Bonetta Dario, Finkelstein Ruth, Provart Nicholas J, Desveaux Darrell, Rodriguez Pedro L, McCourt Peter, Zhu Jian-Kang, Schroeder Julian I, Volkman Brian F, Cutler Sean R", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "reference": [ { "type": "PubMed", "id": "19407142", "url": "https://glygen.org/publication/PubMed/19407142" } ] } ], "crossref": [ { "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19407142", "url": "https://glygen.org/publication/PubMed/19407142", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENRIWTVVLESYVVDMPEGN", "down_seq": "EDDTRMFADTVVKLNLQKLA", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "L", "comment": "Insensitivity to pyrabactin and impaired ABA-mediated binding to PP2Cs.", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" }, { "database": "PubMed", "id": "19407142", "url": "https://glygen.org/publication/PubMed/19407142" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O49686-1.157.157", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49686-1.157.157", "start_pos": 157, "end_pos": 157, "uniprot_canonical_ac": "O49686-1", "length": 191, "uniprot_id": "PYR1_ARATH", "protein_name": "Abscisic acid receptor PYR1", "refseq_ac": "NP_193521", "refseq_name": "Polyketide cyclase/dehydrase and lipid transport superfamily protein", "gene_name": "PYR1", "gene_names_uniprotkb": "PYR1; ABIP6; RCAR11; T6K21.50", "gene_names_refseq": "PYR1; PYRABACTIN RESISTANCE 1; RCAR11; T6K21.50; T6K21_50; regulatory component of ABA receptor 11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins.", "journal": "Science (New York, N.Y.)", "date": "2009-05-22", "authors": "Park Sang-Youl, Fung Pauline, Nishimura Noriyuki, Jensen Davin R, Fujii Hiroaki, Zhao Yang, Lumba Shelley, Santiago Julia, Rodrigues Americo, Chow Tsz-Fung F, Alfred Simon E, Bonetta Dario, Finkelstein Ruth, Provart Nicholas J, Desveaux Darrell, Rodriguez Pedro L, McCourt Peter, Zhu Jian-Kang, Schroeder Julian I, Volkman Brian F, Cutler Sean R", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "reference": [ { "type": "PubMed", "id": "19407142", "url": "https://glygen.org/publication/PubMed/19407142" } ] } ], "crossref": [ { "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19407142", "url": "https://glygen.org/publication/PubMed/19407142", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "TVVLESYVVDMPEGNSEDDT", "down_seq": "MFADTVVKLNLQKLATVAEA", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "H", "comment": "Reduced sensitivity to pyrabactin.", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" }, { "database": "PubMed", "id": "19407142", "url": "https://glygen.org/publication/PubMed/19407142" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O49686-1.152.152", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49686-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "O49686-1", "length": 191, "uniprot_id": "PYR1_ARATH", "protein_name": "Abscisic acid receptor PYR1", "refseq_ac": "NP_193521", "refseq_name": "Polyketide cyclase/dehydrase and lipid transport superfamily protein", "gene_name": "PYR1", "gene_names_uniprotkb": "PYR1; ABIP6; RCAR11; T6K21.50", "gene_names_refseq": "PYR1; PYRABACTIN RESISTANCE 1; RCAR11; T6K21.50; T6K21_50; regulatory component of ABA receptor 11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural mechanism of abscisic acid binding and signaling by dimeric PYR1.", "journal": "Science (New York, N.Y.)", "date": "2009-12-04", "authors": "Nishimura Noriyuki, Hitomi Kenichi, Arvai Andrew S, Rambo Robert P, Hitomi Chiharu, Cutler Sean R, Schroeder Julian I, Getzoff Elizabeth D", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "reference": [ { "type": "PubMed", "id": "19933100", "url": "https://glygen.org/publication/PubMed/19933100" } ] } ], "crossref": [ { "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19933100", "url": "https://glygen.org/publication/PubMed/19933100", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "HAPPELVWSIVRRFDKPQTY", "down_seq": "HFIKSCSVEQNFEMRVGCTR", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "Q", "comment": "Impaired ABA-mediated binding to PP2Cs.", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" }, { "database": "PubMed", "id": "19933100", "url": "https://glygen.org/publication/PubMed/19933100" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O49686-1.78.78", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49686-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "O49686-1", "length": 191, "uniprot_id": "PYR1_ARATH", "protein_name": "Abscisic acid receptor PYR1", "refseq_ac": "NP_193521", "refseq_name": "Polyketide cyclase/dehydrase and lipid transport superfamily protein", "gene_name": "PYR1", "gene_names_uniprotkb": "PYR1; ABIP6; RCAR11; T6K21.50", "gene_names_refseq": "PYR1; PYRABACTIN RESISTANCE 1; RCAR11; T6K21.50; T6K21_50; regulatory component of ABA receptor 11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "CARK1 mediates ABA signaling by phosphorylation of ABA receptors.", "journal": "Cell discovery", "date": "2018", "authors": "Zhang Liang, Li Xiaoyi, Li Dekuan, Sun Yuna, Li Ying, Luo Qin, Liu Zhibin, Wang Jianmei, Li Xufeng, Zhang Hong, Lou Zhiyong, Yang Yi", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" }, { "database": "iPTMnet", "id": "O49686", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49686" } ], "reference": [ { "type": "PubMed", "id": "29928509", "url": "https://glygen.org/publication/PubMed/29928509" } ] } ], "crossref": [ { "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29928509", "url": "https://glygen.org/publication/PubMed/29928509", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O49686", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49686", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YKHFIKSCSVEQNFEMRVGC", "down_seq": "RDVIVISGLPANTSTERLDI", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Reduced CARK1-mediated phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" }, { "database": "PubMed", "id": "29928509", "url": "https://glygen.org/publication/PubMed/29928509" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by CARK1", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" }, { "database": "iPTMnet", "id": "O49686", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O49686" }, { "database": "PubMed", "id": "29928509", "url": "https://glygen.org/publication/PubMed/29928509" } ], "site_lbl": "Thr78" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O49686-1.59.59", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O49686-1.88.88", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O49686-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "O49686-1", "length": 191, "uniprot_id": "PYR1_ARATH", "protein_name": "Abscisic acid receptor PYR1", "refseq_ac": "NP_193521", "refseq_name": "Polyketide cyclase/dehydrase and lipid transport superfamily protein", "gene_name": "PYR1", "gene_names_uniprotkb": "PYR1; ABIP6; RCAR11; T6K21.50", "gene_names_refseq": "PYR1; PYRABACTIN RESISTANCE 1; RCAR11; T6K21.50; T6K21_50; regulatory component of ABA receptor 11", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins.", "journal": "Science (New York, N.Y.)", "date": "2009-05-22", "authors": "Park Sang-Youl, Fung Pauline, Nishimura Noriyuki, Jensen Davin R, Fujii Hiroaki, Zhao Yang, Lumba Shelley, Santiago Julia, Rodrigues Americo, Chow Tsz-Fung F, Alfred Simon E, Bonetta Dario, Finkelstein Ruth, Provart Nicholas J, Desveaux Darrell, Rodriguez Pedro L, McCourt Peter, Zhu Jian-Kang, Schroeder Julian I, Volkman Brian F, Cutler Sean R", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" } ], "reference": [ { "type": "PubMed", "id": "19407142", "url": "https://glygen.org/publication/PubMed/19407142" } ] } ], "crossref": [ { "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19407142", "url": "https://glygen.org/publication/PubMed/19407142", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "EQNFEMRVGCTRDVIVISGL", "down_seq": "ANTSTERLDILDDERRVTGF", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "Insensitivity to pyrabactin and impaired ABA-mediated binding to PP2Cs.", "evidence": [ { "database": "UniProtKB", "id": "O49686", "url": "https://www.uniprot.org/uniprotkb/O49686" }, { "database": "PubMed", "id": "19407142", "url": "https://glygen.org/publication/PubMed/19407142" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "116", "end_pos": "116" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "157", "end_pos": "157" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "78", "end_pos": "78" }, { "start_pos": "88", "end_pos": "88" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O49686-1.78.78", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65440-1.131.131", "start_pos": 131, "end_pos": 131, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSFSGELPKEIYELSGLEVL", "down_seq": "ISSNVFEGELETRGFSQMTQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn131", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "O65440-1.150.150", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TRGFSQMTQLVTLDAYDNSF", "down_seq": "GSLPLSLTTLTRLEHLDLGG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn163", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O65440-1.150.150", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.220.220", "start_pos": 220, "end_pos": 220, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LKFLSLSGNDLRGRIPNELA", "down_seq": "ITTLVQLYLGYYNDYRGGIP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn220", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "O65440-1.226.231", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RGGIPADFGRLINLVHLDLA", "down_seq": "CSLKGSIPAELGNLKNLEVL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn256", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O65440-1.258.258", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O65440-1.262.262", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.28.28", "start_pos": 28, "end_pos": 28, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FFLILSSISPLLCSSLISPL", "down_seq": "LSLIRQANVLISLKQSFDSY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn28", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.293.293", "start_pos": 293, "end_pos": 293, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LEVLFLQTNELTGSVPRELG", "down_seq": "MTSLKTLDLSNNFLEGEIPL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn293", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "O65440-1.303.303", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.354.354", "start_pos": 354, "end_pos": 354, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EIPEFVSELPDLQILKLWHN", "down_seq": "FTGKIPSKLGSNGNLIEIDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn354", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "O65440-1.364.364", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.440.440", "start_pos": 440, "end_pos": 440, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FRLGQNFLTSKLPKGLIYLP", "down_seq": "LSLLELQNNFLTGEIPEEEA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn440", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.472.472", "start_pos": 472, "end_pos": 472, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TGEIPEEEAGNAQFSSLTQI", "down_seq": "LSNNRLSGPIPGSIRNLRSL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn472", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.525.525", "start_pos": 525, "end_pos": 525, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QIPGEIGSLKSLLKIDMSRN", "down_seq": "FSGKFPPEFGDCMSLTYLDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn525", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O65440-1.522.522", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.568.568", "start_pos": 568, "end_pos": 568, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NQISGQIPVQISQIRILNYL", "down_seq": "VSWNSFNQSLPNELGYMKSL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn568", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O65440-1.575.575", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.575.575", "start_pos": 575, "end_pos": 575, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PVQISQIRILNYLNVSWNSF", "down_seq": "QSLPNELGYMKSLTSADFSH", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn575", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O65440-1.568.568", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.597.597", "start_pos": 597, "end_pos": 597, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLPNELGYMKSLTSADFSHN", "down_seq": "FSGSVPTSGQFSYFNNTSFL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn597", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "upstream", "id": "O65440-1.613.613", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.613.613", "start_pos": 613, "end_pos": 613, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FSHNNFSGSVPTSGQFSYFN", "down_seq": "TSFLGNPFLCGFSSNPCNGS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn613", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O65440-1.597.597", "categories": [ "glycosylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O65440-1.631.631", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.631.631", "start_pos": 631, "end_pos": 631, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FNNTSFLGNPFLCGFSSNPC", "down_seq": "GSQNQSQSQLLNQNNARSRG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn631", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O65440-1.613.613", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O65440-1.635.635", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.635.635", "start_pos": 635, "end_pos": 635, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SFLGNPFLCGFSSNPCNGSQ", "down_seq": "QSQSQLLNQNNARSRGEISA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn635", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O65440-1.631.631", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.75.75", "start_pos": 75, "end_pos": 75, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WNIPNFNSLCSWTGVSCDNL", "down_seq": "QSITRLDLSNLNISGTISPE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn75", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "O65440-1.87.87", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TGVSCDNLNQSITRLDLSNL", "down_seq": "ISGTISPEISRLSPSLVFLD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn87", "evidence": [ { "id": "O65440", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O65440#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "O65440-1.75.75", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature.", "journal": "EMBO reports", "date": "2017-08", "authors": "Hazak Ora, Brandt Benjamin, Cattaneo Pietro, Santiago Julia, Rodriguez-Villalon Antia, Hothorn Michael, Hardtke Christian S", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "reference": [ { "type": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LNISSNVFEGELETRGFSQM", "down_seq": "QLVTLDAYDNSFNGSLPLSL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "I", "comment": "Insensitivity to root growth inhibition mediated by CLE45 peptide.", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" }, { "database": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "O65440-1.131.131", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O65440-1.163.163", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65440-1.226.231", "start_pos": 226, "end_pos": 231, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature.", "journal": "EMBO reports", "date": "2017-08", "authors": "Hazak Ora, Brandt Benjamin, Cattaneo Pietro, Santiago Julia, Rodriguez-Villalon Antia, Hothorn Michael, Hardtke Christian S", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "reference": [ { "type": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "QLYLGY", "start_aa": "Q", "up_seq": "SGNDLRGRIPNELANITTLV", "down_seq": "YNDYRGGIPADFGRLINLVH", "mutagenesis": [ { "sequence_org": "QLYLGY", "sequence_mut": "AAAAAA", "comment": "Strongly reduced binding to CLE45 and insensitivity to BRX-dependent root growth inhibition mediated by CLE45 peptide.", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" }, { "database": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O65440-1.220.220", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65440-1.303.303", "start_pos": 303, "end_pos": 303, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature.", "journal": "EMBO reports", "date": "2017-08", "authors": "Hazak Ora, Brandt Benjamin, Cattaneo Pietro, Santiago Julia, Rodriguez-Villalon Antia, Hothorn Michael, Hardtke Christian S", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "reference": [ { "type": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTGSVPRELGNMTSLKTLDL", "down_seq": "NNFLEGEIPLELSGLQKLQL", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "F", "comment": "Insensitivity to root growth inhibition mediated by CLE45 peptide.", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" }, { "database": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O65440-1.293.293", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65440-1.364.364", "start_pos": 364, "end_pos": 364, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature.", "journal": "EMBO reports", "date": "2017-08", "authors": "Hazak Ora, Brandt Benjamin, Cattaneo Pietro, Santiago Julia, Rodriguez-Villalon Antia, Hothorn Michael, Hardtke Christian S", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "reference": [ { "type": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "DLQILKLWHNNFTGKIPSKL", "down_seq": "SNGNLIEIDLSTNKLTGLIP", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "R", "comment": "Insensitivity to root growth inhibition mediated by CLE45 peptide.", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" }, { "database": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O65440-1.354.354", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65440-1.883.883", "start_pos": 883, "end_pos": 883, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature.", "journal": "EMBO reports", "date": "2017-08", "authors": "Hazak Ora, Brandt Benjamin, Cattaneo Pietro, Santiago Julia, Rodriguez-Villalon Antia, Hothorn Michael, Hardtke Christian S", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "reference": [ { "type": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "QDNGASECMSSIAGSYGYIA", "down_seq": "EYAYTLRIDEKSDVYSFGVV", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "Insensitivity to root growth inhibition mediated by CLE45 peptide.", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" }, { "database": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "O65440-1.901.901", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65440-1.901.901", "start_pos": 901, "end_pos": 901, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature.", "journal": "EMBO reports", "date": "2017-08", "authors": "Hazak Ora, Brandt Benjamin, Cattaneo Pietro, Santiago Julia, Rodriguez-Villalon Antia, Hothorn Michael, Hardtke Christian S", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "reference": [ { "type": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "crossref": [ { "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "IAPEYAYTLRIDEKSDVYSF", "down_seq": "VVLLELITGRKPVDNFGEEG", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "Insensitivity to root growth inhibition mediated by CLE45 peptide.", "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" }, { "database": "PubMed", "id": "28607033", "url": "https://glygen.org/publication/PubMed/28607033" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O65440-1.883.883", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O65440-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65440", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TRLEHLDLGGNYFDGEIPRS", "down_seq": "GSFLSLKFLSLSGNDLRGRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65440", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65440" } ], "site_lbl": "Tyr194" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.258.258", "start_pos": 258, "end_pos": 258, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65440", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GIPADFGRLINLVHLDLANC", "down_seq": "LKGSIPAELGNLKNLEVLFL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65440", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65440" } ], "site_lbl": "Ser258" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O65440-1.256.256", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O65440-1.262.262", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.262.262", "start_pos": 262, "end_pos": 262, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65440", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DFGRLINLVHLDLANCSLKG", "down_seq": "IPAELGNLKNLEVLFLQTNE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65440", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65440" } ], "site_lbl": "Ser262" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O65440-1.256.256", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O65440-1.258.258", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O65440-1.522.522", "start_pos": 522, "end_pos": 522, "uniprot_canonical_ac": "O65440-1", "length": 992, "uniprot_id": "BAME3_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3", "refseq_ac": "NP_193760", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "BAM3", "gene_names_uniprotkb": "BAM3; F1C12.190", "gene_names_refseq": "BAM3; BARELY ANY MERISTEM 3; F1C12.190; F1C12_190", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O65440", "url": "https://www.uniprot.org/uniprotkb/O65440" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O65440", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65440", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSGQIPGEIGSLKSLLKIDM", "down_seq": "RNNFSGKFPPEFGDCMSLTY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O65440", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O65440" } ], "site_lbl": "Ser522" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "131", "end_pos": "131" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "220", "end_pos": "220" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "28", "end_pos": "28" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "440", "end_pos": "440" }, { "start_pos": "472", "end_pos": "472" }, { "start_pos": "525", "end_pos": "525" }, { "start_pos": "568", "end_pos": "568" }, { "start_pos": "575", "end_pos": "575" }, { "start_pos": "597", "end_pos": "597" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "631", "end_pos": "631" }, { "start_pos": "635", "end_pos": "635" }, { "start_pos": "75", "end_pos": "75" }, { "start_pos": "87", "end_pos": "87" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "226", "end_pos": "231" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "364", "end_pos": "364" }, { "start_pos": "883", "end_pos": "883" }, { "start_pos": "901", "end_pos": "901" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "194", "end_pos": "194" }, { "start_pos": "258", "end_pos": "258" }, { "start_pos": "262", "end_pos": "262" }, { "start_pos": "522", "end_pos": "522" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "O65440-1.525.525", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80450-1.154.154", "start_pos": 154, "end_pos": 154, "uniprot_canonical_ac": "O80450-1", "length": 289, "uniprot_id": "TGT3B_ARATH", "protein_name": "Trihelix transcription factor GT-3b", "refseq_ac": "NP_181360", "refseq_name": "Homeodomain-like superfamily protein", "gene_name": "GT-3B", "gene_names_uniprotkb": "GT-3B; F16M14.18; GT1L; GT3B", "gene_names_refseq": "F16M14.18; F16M14_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80450", "url": "https://www.uniprot.org/uniprotkb/O80450" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LWAESEGGGGGTSGAARKRE", "down_seq": "SSDEEEENVNEELVDVSNDP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Tyr154" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "31", "end_pos": "31" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O80450-1.155.155", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80450-1.156.156", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80450-1.155.155", "start_pos": 155, "end_pos": 155, "uniprot_canonical_ac": "O80450-1", "length": 289, "uniprot_id": "TGT3B_ARATH", "protein_name": "Trihelix transcription factor GT-3b", "refseq_ac": "NP_181360", "refseq_name": "Homeodomain-like superfamily protein", "gene_name": "GT-3B", "gene_names_uniprotkb": "GT-3B; F16M14.18; GT1L; GT3B", "gene_names_refseq": "F16M14.18; F16M14_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80450", "url": "https://www.uniprot.org/uniprotkb/O80450" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WAESEGGGGGTSGAARKREY", "down_seq": "SDEEEENVNEELVDVSNDPK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser155" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "31", "end_pos": "31" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O80450-1.154.154", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80450-1.156.156", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80450-1.156.156", "start_pos": 156, "end_pos": 156, "uniprot_canonical_ac": "O80450-1", "length": 289, "uniprot_id": "TGT3B_ARATH", "protein_name": "Trihelix transcription factor GT-3b", "refseq_ac": "NP_181360", "refseq_name": "Homeodomain-like superfamily protein", "gene_name": "GT-3B", "gene_names_uniprotkb": "GT-3B; F16M14.18; GT1L; GT3B", "gene_names_refseq": "F16M14.18; F16M14_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80450", "url": "https://www.uniprot.org/uniprotkb/O80450" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AESEGGGGGTSGAARKREYS", "down_seq": "DEEEENVNEELVDVSNDPKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser156" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "31", "end_pos": "31" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O80450-1.154.154", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80450-1.155.155", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80450-1.196.196", "start_pos": 196, "end_pos": 196, "uniprot_canonical_ac": "O80450-1", "length": 289, "uniprot_id": "TGT3B_ARATH", "protein_name": "Trihelix transcription factor GT-3b", "refseq_ac": "NP_181360", "refseq_name": "Homeodomain-like superfamily protein", "gene_name": "GT-3B", "gene_names_uniprotkb": "GT-3B; F16M14.18; GT1L; GT3B", "gene_names_refseq": "F16M14.18; F16M14_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80450", "url": "https://www.uniprot.org/uniprotkb/O80450" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ILNPKKNIAKKRKGGSNSSN", "down_seq": "NNGVREVLEEFMRHQVRMES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" } ], "site_lbl": "Ser196" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "31", "end_pos": "31" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80450-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "O80450-1", "length": 289, "uniprot_id": "TGT3B_ARATH", "protein_name": "Trihelix transcription factor GT-3b", "refseq_ac": "NP_181360", "refseq_name": "Homeodomain-like superfamily protein", "gene_name": "GT-3B", "gene_names_uniprotkb": "GT-3B; F16M14.18; GT1L; GT3B", "gene_names_refseq": "F16M14.18; F16M14_18", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80450", "url": "https://www.uniprot.org/uniprotkb/O80450" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLQYLNKHHLHTQSQTPEIA", "down_seq": "PVAVGDRFPQWSVEETKELI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80450", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80450" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser31" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "154", "end_pos": "154" }, { "start_pos": "155", "end_pos": "155" }, { "start_pos": "156", "end_pos": "156" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "31", "end_pos": "31" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80482-1.98.98", "start_pos": 98, "end_pos": 98, "uniprot_canonical_ac": "O80482-1", "length": 207, "uniprot_id": "BH149_ARATH", "protein_name": "Transcription factor bHLH149", "refseq_ac": "NP_563839", "refseq_name": "basic helix-loop-helix (bHLH) DNA-binding superfamily protein", "gene_name": "BHLH149", "gene_names_uniprotkb": "BHLH149; AIF4; EN144; T12M4.4", "gene_names_refseq": "AIF4; ATBS1 Interacting Factor 4; T12M4.4; T12M4_4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80482", "url": "https://www.uniprot.org/uniprotkb/O80482" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O80482", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80482", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLVSGAAREIRDTADRVLAA", "down_seq": "ARGTTRWSRAILASRVRAKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80482", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80482" } ], "site_lbl": "Ser98" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80748-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "O80748-1", "length": 251, "uniprot_id": "O80748_ARATH", "protein_name": "B-box zinc finger family protein", "refseq_ac": "NP_176231", "refseq_name": "B-box zinc finger family protein", "gene_name": "BBX26", "gene_names_uniprotkb": "BBX26; B-box domain protein 26; T13D8.14; T13D8_14", "gene_names_refseq": "B-box domain protein 26; BBX26; T13D8.14; T13D8_14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80748", "url": "https://www.uniprot.org/uniprotkb/O80748" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GGYQFNFPPVHPPAAEGIPV", "down_seq": "PPTELPQQDINYDYLDDVDD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr225", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80837-1.25.25", "start_pos": 25, "end_pos": 25, "uniprot_canonical_ac": "O80837-1", "length": 190, "uniprot_id": "REMO_ARATH", "protein_name": "Remorin", "refseq_ac": "NP_182106", "refseq_name": "Remorin family protein", "gene_name": "DBP", "gene_names_uniprotkb": "DBP; F4I18.20", "gene_names_refseq": "F4I18.20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QKTSKVDVESPAVLAPAKEP", "down_seq": "PAPVEVADEKIHNPPPVESK", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr25", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O80837-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O80837-1.14.14", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O80837-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "O80837-1", "length": 190, "uniprot_id": "REMO_ARATH", "protein_name": "Remorin", "refseq_ac": "NP_182106", "refseq_name": "Remorin family protein", "gene_name": "DBP", "gene_names_uniprotkb": "DBP; F4I18.20", "gene_names_refseq": "F4I18.20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" }, { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAEEQKTSKVDVE", "down_seq": "PAVLAPAKEPTPAPVEVADE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser14" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O80837-1.7.7", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O80837-1.25.25", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80837-1.58.58", "start_pos": 58, "end_pos": 58, "uniprot_canonical_ac": "O80837-1", "length": 190, "uniprot_id": "REMO_ARATH", "protein_name": "Remorin", "refseq_ac": "NP_182106", "refseq_name": "Remorin family protein", "gene_name": "DBP", "gene_names_uniprotkb": "DBP; F4I18.20", "gene_names_refseq": "F4I18.20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" }, { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NPPPVESKALAVVEKPIEEH", "down_seq": "PKKASSGSADRDVILADLEK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Thr58" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O80837-1.63.63", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80837-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80837-1.66.66", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80837-1.63.63", "start_pos": 63, "end_pos": 63, "uniprot_canonical_ac": "O80837-1", "length": 190, "uniprot_id": "REMO_ARATH", "protein_name": "Remorin", "refseq_ac": "NP_182106", "refseq_name": "Remorin family protein", "gene_name": "DBP", "gene_names_uniprotkb": "DBP; F4I18.20", "gene_names_refseq": "F4I18.20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" }, { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESKALAVVEKPIEEHTPKKA", "down_seq": "SGSADRDVILADLEKEKKTS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser63" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O80837-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80837-1.64.64", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80837-1.66.66", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80837-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "O80837-1", "length": 190, "uniprot_id": "REMO_ARATH", "protein_name": "Remorin", "refseq_ac": "NP_182106", "refseq_name": "Remorin family protein", "gene_name": "DBP", "gene_names_uniprotkb": "DBP; F4I18.20", "gene_names_refseq": "F4I18.20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" }, { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKALAVVEKPIEEHTPKKAS", "down_seq": "GSADRDVILADLEKEKKTSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser64" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O80837-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80837-1.63.63", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80837-1.66.66", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80837-1.66.66", "start_pos": 66, "end_pos": 66, "uniprot_canonical_ac": "O80837-1", "length": 190, "uniprot_id": "REMO_ARATH", "protein_name": "Remorin", "refseq_ac": "NP_182106", "refseq_name": "Remorin family protein", "gene_name": "DBP", "gene_names_uniprotkb": "DBP; F4I18.20", "gene_names_refseq": "F4I18.20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" }, { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ALAVVEKPIEEHTPKKASSG", "down_seq": "ADRDVILADLEKEKKTSFIK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser66" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "O80837-1.58.58", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O80837-1.63.63", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80837-1.64.64", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80837-1.7.7", "start_pos": 7, "end_pos": 7, "uniprot_canonical_ac": "O80837-1", "length": 190, "uniprot_id": "REMO_ARATH", "protein_name": "Remorin", "refseq_ac": "NP_182106", "refseq_name": "Remorin family protein", "gene_name": "DBP", "gene_names_uniprotkb": "DBP; F4I18.20", "gene_names_refseq": "F4I18.20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80837", "url": "https://www.uniprot.org/uniprotkb/O80837" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAEEQK", "down_seq": "SKVDVESPAVLAPAKEPTPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80837", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80837" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr7" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "25", "end_pos": "25" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "58", "end_pos": "58" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "66", "end_pos": "66" }, { "start_pos": "7", "end_pos": "7" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O80837-1.14.14", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O80837-1.25.25", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80920-1.113.113", "start_pos": 113, "end_pos": 113, "uniprot_canonical_ac": "O80920-1", "length": 207, "uniprot_id": "PYL4_ARATH", "protein_name": "Abscisic acid receptor PYL4", "refseq_ac": "NP_565887", "refseq_name": "PYR1-like 4", "gene_name": "PYL4", "gene_names_uniprotkb": "PYL4; ABIP2; RCAR10; T19C21.20", "gene_names_refseq": "AtPYL4; PYL4; PYR1-like 4; RCAR10; T19C21.20; T19C21_20; regulatory components of ABA receptor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80920", "url": "https://www.uniprot.org/uniprotkb/O80920" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DGDNVGSLRQVHVVSGLPAA", "down_seq": "STERLDILDDERHVISFSVV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser113" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O80920-1.114.114", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80920-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "O80920-1", "length": 207, "uniprot_id": "PYL4_ARATH", "protein_name": "Abscisic acid receptor PYL4", "refseq_ac": "NP_565887", "refseq_name": "PYR1-like 4", "gene_name": "PYL4", "gene_names_uniprotkb": "PYL4; ABIP2; RCAR10; T19C21.20", "gene_names_refseq": "AtPYL4; PYL4; PYR1-like 4; RCAR10; T19C21.20; T19C21_20; regulatory components of ABA receptor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80920", "url": "https://www.uniprot.org/uniprotkb/O80920" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDNVGSLRQVHVVSGLPAAS", "down_seq": "TERLDILDDERHVISFSVVG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser114" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O80920-1.113.113", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80920-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "O80920-1", "length": 207, "uniprot_id": "PYL4_ARATH", "protein_name": "Abscisic acid receptor PYL4", "refseq_ac": "NP_565887", "refseq_name": "PYR1-like 4", "gene_name": "PYL4", "gene_names_uniprotkb": "PYL4; ABIP2; RCAR10; T19C21.20", "gene_names_refseq": "AtPYL4; PYL4; PYR1-like 4; RCAR10; T19C21.20; T19C21_20; regulatory components of ABA receptor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80920", "url": "https://www.uniprot.org/uniprotkb/O80920" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDGDSVQIPMMIASFQKRFP", "down_seq": "LSRDSTAARFHTHEVGPNQC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80920-1.54.54", "start_pos": 54, "end_pos": 54, "uniprot_canonical_ac": "O80920-1", "length": 207, "uniprot_id": "PYL4_ARATH", "protein_name": "Abscisic acid receptor PYL4", "refseq_ac": "NP_565887", "refseq_name": "PYR1-like 4", "gene_name": "PYL4", "gene_names_uniprotkb": "PYL4; ABIP2; RCAR10; T19C21.20", "gene_names_refseq": "AtPYL4; PYL4; PYR1-like 4; RCAR10; T19C21.20; T19C21_20; regulatory components of ABA receptor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80920", "url": "https://www.uniprot.org/uniprotkb/O80920" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "CEPR2 phosphorylates and accelerates the degradation of PYR/PYLs in Arabidopsis.", "journal": "Journal of experimental botany", "date": "2019-10-15", "authors": "Yu Zipeng, Zhang Di, Xu Yang, Jin Songsong, Zhang Lei, Zhang Shizhong, Yang Guodong, Huang Jinguang, Yan Kang, Wu Changai, Zheng Chengchao", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" } ], "reference": [ { "type": "PubMed", "id": "31232446", "url": "https://glygen.org/publication/PubMed/31232446" } ] } ], "crossref": [ { "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "31232446", "url": "https://glygen.org/publication/PubMed/31232446", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRDSTAARFHTHEVGPNQCC", "down_seq": "AVIQEISAPISTVWSVVRRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" }, { "database": "PubMed", "id": "31232446", "url": "https://glygen.org/publication/PubMed/31232446" } ], "site_lbl": "Ser54" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80920-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "O80920-1", "length": 207, "uniprot_id": "PYL4_ARATH", "protein_name": "Abscisic acid receptor PYL4", "refseq_ac": "NP_565887", "refseq_name": "PYR1-like 4", "gene_name": "PYL4", "gene_names_uniprotkb": "PYL4; ABIP2; RCAR10; T19C21.20", "gene_names_refseq": "AtPYL4; PYL4; PYR1-like 4; RCAR10; T19C21.20; T19C21_20; regulatory components of ABA receptor 10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80920", "url": "https://www.uniprot.org/uniprotkb/O80920" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WSVVRRFDNPQAYKHFLKSC", "down_seq": "VIGGDGDNVGSLRQVHVVSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O80920", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O80920" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser88" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "113", "end_pos": "113" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "54", "end_pos": "54" }, { "start_pos": "88", "end_pos": "88" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.124.124", "start_pos": 124, "end_pos": 124, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.", "journal": "Nature", "date": "2009-12-03", "authors": "Melcher Karsten, Ng Ley-Moy, Zhou X Edward, Soon Fen-Fen, Xu Yong, Suino-Powell Kelly M, Park Sang-Youl, Weiner Joshua J, Fujii Hiroaki, Chinnusamy Viswanathan, Kovach Amanda, Li Jun, Wang Yonghong, Li Jiayang, Peterson Francis C, Jensen Davin R, Yong Eu-Leong, Volkman Brian F, Cutler Sean R, Zhu Jian-Kang, Xu H Eric", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DDDHRVLSFRVVGGEHRLKN", "down_seq": "KSVTSVNEFLNQDSGKVYTV", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Impaired ABA-mediated binding to PP2Cs and subsequent inhibition.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.", "journal": "Nature", "date": "2009-12-03", "authors": "Melcher Karsten, Ng Ley-Moy, Zhou X Edward, Soon Fen-Fen, Xu Yong, Suino-Powell Kelly M, Park Sang-Youl, Weiner Joshua J, Fujii Hiroaki, Chinnusamy Viswanathan, Kovach Amanda, Li Jun, Wang Yonghong, Li Jiayang, Peterson Francis C, Jensen Davin R, Yong Eu-Leong, Volkman Brian F, Cutler Sean R, Zhu Jian-Kang, Xu H Eric", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "VTSVNEFLNQDSGKVYTVVL", "down_seq": "SYTVDIPEGNTEEDTKMFVD", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Impaired ABA-mediated binding to PP2Cs and subsequent inhibition.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O80992-1.151.151", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.151.151", "start_pos": 151, "end_pos": 151, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.", "journal": "Nature", "date": "2009-12-03", "authors": "Melcher Karsten, Ng Ley-Moy, Zhou X Edward, Soon Fen-Fen, Xu Yong, Suino-Powell Kelly M, Park Sang-Youl, Weiner Joshua J, Fujii Hiroaki, Chinnusamy Viswanathan, Kovach Amanda, Li Jun, Wang Yonghong, Li Jiayang, Peterson Francis C, Jensen Davin R, Yong Eu-Leong, Volkman Brian F, Cutler Sean R, Zhu Jian-Kang, Xu H Eric", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "NEFLNQDSGKVYTVVLESYT", "down_seq": "DIPEGNTEEDTKMFVDTVVK", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Impaired ABA-mediated binding to PP2Cs and subsequent inhibition.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O80992-1.147.147", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.173.173", "start_pos": 173, "end_pos": 173, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.", "journal": "Nature", "date": "2009-12-03", "authors": "Melcher Karsten, Ng Ley-Moy, Zhou X Edward, Soon Fen-Fen, Xu Yong, Suino-Powell Kelly M, Park Sang-Youl, Weiner Joshua J, Fujii Hiroaki, Chinnusamy Viswanathan, Kovach Amanda, Li Jun, Wang Yonghong, Li Jiayang, Peterson Francis C, Jensen Davin R, Yong Eu-Leong, Volkman Brian F, Cutler Sean R, Zhu Jian-Kang, Xu H Eric", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IPEGNTEEDTKMFVDTVVKL", "down_seq": "LQKLGVAATSAPMHDDE", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "A", "comment": "Impaired ABA-mediated binding to PP2Cs and subsequent inhibition.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.64.64", "start_pos": 64, "end_pos": 64, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.", "journal": "Nature", "date": "2009-12-03", "authors": "Melcher Karsten, Ng Ley-Moy, Zhou X Edward, Soon Fen-Fen, Xu Yong, Suino-Powell Kelly M, Park Sang-Youl, Weiner Joshua J, Fujii Hiroaki, Chinnusamy Viswanathan, Kovach Amanda, Li Jun, Wang Yonghong, Li Jiayang, Peterson Francis C, Jensen Davin R, Yong Eu-Leong, Volkman Brian F, Cutler Sean R, Zhu Jian-Kang, Xu H Eric", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] }, { "title": "Structural insights into the mechanism of abscisic acid signaling by PYL proteins.", "journal": "Nature structural & molecular biology", "date": "2009-12", "authors": "Yin Ping, Fan He, Hao Qi, Yuan Xiaoqiu, Wu Di, Pang Yuxuan, Yan Chuangye, Li Wenqi, Wang Jiawei, Yan Nieng", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19893533", "url": "https://glygen.org/publication/PubMed/19893533" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19893533", "url": "https://glygen.org/publication/PubMed/19893533", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "HAPASVVWPLIRRFDNPERY", "down_seq": "HFVKRCRLISGDGDVGSVRE", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Impaired ABA-mediated binding to PP2Cs and subsequent inhibition.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" }, { "database": "PubMed", "id": "19893533", "url": "https://glygen.org/publication/PubMed/19893533" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.", "journal": "Nature", "date": "2009-12-03", "authors": "Melcher Karsten, Ng Ley-Moy, Zhou X Edward, Soon Fen-Fen, Xu Yong, Suino-Powell Kelly M, Park Sang-Youl, Weiner Joshua J, Fujii Hiroaki, Chinnusamy Viswanathan, Kovach Amanda, Li Jun, Wang Yonghong, Li Jiayang, Peterson Francis C, Jensen Davin R, Yong Eu-Leong, Volkman Brian F, Cutler Sean R, Zhu Jian-Kang, Xu H Eric", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] }, { "title": "The molecular basis of ABA-independent inhibition of PP2Cs by a subclass of PYL proteins.", "journal": "Molecular cell", "date": "2011-06-10", "authors": "Hao Qi, Yin Ping, Li Wenqi, Wang Li, Yan Chuangye, Lin Zhaohu, Wu Jim Zhen, Wang Jiawei, Yan S Frank, Yan Nieng", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "21658606", "url": "https://glygen.org/publication/PubMed/21658606" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21658606", "url": "https://glygen.org/publication/PubMed/21658606", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "VKRCRLISGDGDVGSVREVT", "down_seq": "ISGLPASTSTERLEFVDDDH", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Impaired ABA-mediated binding to PP2Cs and subsequent inhibition.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] }, { "sequence_org": "V", "sequence_mut": "L", "comment": "Increased constitutive inhibition of PP2C phosphatase.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "21658606", "url": "https://glygen.org/publication/PubMed/21658606" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O80992-1.88.88", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80992-1.90.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O80992-1.91.91", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O80992-1.93.93", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O80992-1.98.98", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The molecular basis of ABA-independent inhibition of PP2Cs by a subclass of PYL proteins.", "journal": "Molecular cell", "date": "2011-06-10", "authors": "Hao Qi, Yin Ping, Li Wenqi, Wang Li, Yan Chuangye, Lin Zhaohu, Wu Jim Zhen, Wang Jiawei, Yan S Frank, Yan Nieng", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "21658606", "url": "https://glygen.org/publication/PubMed/21658606" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21658606", "url": "https://glygen.org/publication/PubMed/21658606", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "KRCRLISGDGDVGSVREVTV", "down_seq": "SGLPASTSTERLEFVDDDHR", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "K", "comment": "Monomer due to impaired homodimerization. Increased ABA-binding affinity and increased constitutive inhibition of PP2C phosphatase.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "21658606", "url": "https://glygen.org/publication/PubMed/21658606" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O80992-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80992-1.90.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80992-1.91.91", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80992-1.93.93", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "O80992-1.98.98", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.90.90", "start_pos": 90, "end_pos": 90, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.", "journal": "Nature", "date": "2009-12-03", "authors": "Melcher Karsten, Ng Ley-Moy, Zhou X Edward, Soon Fen-Fen, Xu Yong, Suino-Powell Kelly M, Park Sang-Youl, Weiner Joshua J, Fujii Hiroaki, Chinnusamy Viswanathan, Kovach Amanda, Li Jun, Wang Yonghong, Li Jiayang, Peterson Francis C, Jensen Davin R, Yong Eu-Leong, Volkman Brian F, Cutler Sean R, Zhu Jian-Kang, Xu H Eric", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "CRLISGDGDVGSVREVTVIS", "down_seq": "LPASTSTERLEFVDDDHRVL", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Impaired ABA-mediated binding to PP2Cs and subsequent inhibition.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "O80992-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80992-1.88.88", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O80992-1.91.91", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O80992-1.93.93", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O80992-1.98.98", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.91.91", "start_pos": 91, "end_pos": 91, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.", "journal": "Nature", "date": "2009-12-03", "authors": "Melcher Karsten, Ng Ley-Moy, Zhou X Edward, Soon Fen-Fen, Xu Yong, Suino-Powell Kelly M, Park Sang-Youl, Weiner Joshua J, Fujii Hiroaki, Chinnusamy Viswanathan, Kovach Amanda, Li Jun, Wang Yonghong, Li Jiayang, Peterson Francis C, Jensen Davin R, Yong Eu-Leong, Volkman Brian F, Cutler Sean R, Zhu Jian-Kang, Xu H Eric", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "RLISGDGDVGSVREVTVISG", "down_seq": "PASTSTERLEFVDDDHRVLS", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Impaired ABA-mediated binding to PP2Cs and subsequent inhibition.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O80992-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O80992-1.88.88", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O80992-1.90.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O80992-1.93.93", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O80992-1.98.98", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.93.93", "start_pos": 93, "end_pos": 93, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.", "journal": "Nature", "date": "2009-12-03", "authors": "Melcher Karsten, Ng Ley-Moy, Zhou X Edward, Soon Fen-Fen, Xu Yong, Suino-Powell Kelly M, Park Sang-Youl, Weiner Joshua J, Fujii Hiroaki, Chinnusamy Viswanathan, Kovach Amanda, Li Jun, Wang Yonghong, Li Jiayang, Peterson Francis C, Jensen Davin R, Yong Eu-Leong, Volkman Brian F, Cutler Sean R, Zhu Jian-Kang, Xu H Eric", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "ISGDGDVGSVREVTVISGLP", "down_seq": "STSTERLEFVDDDHRVLSFR", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "S", "comment": "Impaired ABA-mediated binding to PP2Cs and subsequent inhibition.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O80992-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80992-1.88.88", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O80992-1.90.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O80992-1.91.91", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O80992-1.98.98", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O80992-1.98.98", "start_pos": 98, "end_pos": 98, "uniprot_canonical_ac": "O80992-1", "length": 190, "uniprot_id": "PYL2_ARATH", "protein_name": "Abscisic acid receptor PYL2", "refseq_ac": "NP_180174", "refseq_name": "PYR1-like 2", "gene_name": "PYL2", "gene_names_uniprotkb": "PYL2; RCAR14; T19L18.15", "gene_names_refseq": "PYL2; PYR1-like 2; RCAR14; T19L18.15; T19L18_15; regulatory components of ABA receptor 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors.", "journal": "Nature", "date": "2009-12-03", "authors": "Melcher Karsten, Ng Ley-Moy, Zhou X Edward, Soon Fen-Fen, Xu Yong, Suino-Powell Kelly M, Park Sang-Youl, Weiner Joshua J, Fujii Hiroaki, Chinnusamy Viswanathan, Kovach Amanda, Li Jun, Wang Yonghong, Li Jiayang, Peterson Francis C, Jensen Davin R, Yong Eu-Leong, Volkman Brian F, Cutler Sean R, Zhu Jian-Kang, Xu H Eric", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" } ], "reference": [ { "type": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "crossref": [ { "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "DVGSVREVTVISGLPASTST", "down_seq": "RLEFVDDDHRVLSFRVVGGE", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Impaired ABA-mediated binding to PP2Cs and subsequent inhibition.", "evidence": [ { "database": "UniProtKB", "id": "O80992", "url": "https://www.uniprot.org/uniprotkb/O80992" }, { "database": "PubMed", "id": "19898420", "url": "https://glygen.org/publication/PubMed/19898420" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "124", "end_pos": "124" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "151", "end_pos": "151" }, { "start_pos": "173", "end_pos": "173" }, { "start_pos": "64", "end_pos": "64" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" }, { "start_pos": "91", "end_pos": "91" }, { "start_pos": "93", "end_pos": "93" }, { "start_pos": "98", "end_pos": "98" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "O80992-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "O80992-1.88.88", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O80992-1.90.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "O80992-1.91.91", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O80992-1.93.93", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81069-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LVKTGETLPIISAIEIRPLR", "down_seq": "NTYVTQSGSLMMSFRVYLSN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn177", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.217.217", "start_pos": 217, "end_pos": 217, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSDASIRYADDVHDRIWSPF", "down_seq": "GSSHTHITTDLNINNSNAYE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn217", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "O81069-1.231.231", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.231.231", "start_pos": 231, "end_pos": 231, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RIWSPFNGSSHTHITTDLNI", "down_seq": "NSNAYEIPKNILQTAAIPRN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn231", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O81069-1.217.217", "categories": [ "glycosylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O81069-1.251.251", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.251.251", "start_pos": 251, "end_pos": 251, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NNSNAYEIPKNILQTAAIPR", "down_seq": "ASAPLIITWDPLPINAEVYL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn251", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81069-1.231.231", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PINAEVYLYMHFAEIQTLEA", "down_seq": "ETRQFDVILRGNFNHSGFSP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn284", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "O81069-1.298.298", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.298.298", "start_pos": 298, "end_pos": 298, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IQTLEANETRQFDVILRGNF", "down_seq": "HSGFSPTKLKVFTLYTEEPM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn298", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O81069-1.284.284", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.334.334", "start_pos": 334, "end_pos": 334, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TEEPMKCGSEGCYLQLVKTP", "down_seq": "STLPPLINAIEAYSVIEFSQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn334", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.418.418", "start_pos": 418, "end_pos": 418, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YVDGSTSPTIISLDLSKSGL", "down_seq": "GSIPQILQNFTQLQELDLSN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn418", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "O81069-1.427.427", "categories": [ "glycosylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O81069-1.438.438", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.427.427", "start_pos": 427, "end_pos": 427, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "IISLDLSKSGLNGSIPQILQ", "down_seq": "FTQLQELDLSNNSLTGPVPI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn427", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O81069-1.418.418", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81069-1.438.438", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.438.438", "start_pos": 438, "end_pos": 438, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NGSIPQILQNFTQLQELDLS", "down_seq": "NSLTGPVPIFLANMKTLSLI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn438", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O81069-1.418.418", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81069-1.427.427", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.459.459", "start_pos": 459, "end_pos": 459, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSLTGPVPIFLANMKTLSLI", "down_seq": "LSGNNLSGSVPQALLDKEKE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn459", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O81069-1.464.464", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.464.464", "start_pos": 464, "end_pos": 464, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PVPIFLANMKTLSLINLSGN", "down_seq": "LSGSVPQALLDKEKEGLVLK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn464", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O81069-1.459.459", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SDSTFIQTGKIDSVDKDLNI", "down_seq": "LSKQYLTLRYFPEGKRNCYS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn70", "evidence": [ { "id": "O81069", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O81069#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.742.742", "start_pos": 742, "end_pos": 742, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLSRSFPIGNEKNVSTVVAG", "down_seq": "PGYLDPEYYQTNWLTEKSDI", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr742", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "site_lbl": "Thr742" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "O81069-1.736.736", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81069-1.737.737", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "O81069-1.750.750", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.568.568", "start_pos": 568, "end_pos": 568, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SNPGHNSQSESSFTSKKIRF", "down_seq": "YSEVQEMTNNFDKALGEGGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "site_lbl": "Thr568" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.650.650", "start_pos": 650, "end_pos": 650, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HINLVSLVGYCDEGEHLALI", "down_seq": "EYMPNGDLKQHLSGKHGGFV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "site_lbl": "Tyr650" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.736.736", "start_pos": 736, "end_pos": 736, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKLADFGLSRSFPIGNEKNV", "down_seq": "TVVAGTPGYLDPEYYQTNWL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "site_lbl": "Ser736" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O81069-1.737.737", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "O81069-1.742.742", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "O81069-1.750.750", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.737.737", "start_pos": 737, "end_pos": 737, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLADFGLSRSFPIGNEKNVS", "down_seq": "VVAGTPGYLDPEYYQTNWLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "site_lbl": "Thr737" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O81069-1.736.736", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81069-1.742.742", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "O81069-1.750.750", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81069-1.750.750", "start_pos": 750, "end_pos": 750, "uniprot_canonical_ac": "O81069-1", "length": 884, "uniprot_id": "Y2899_ARATH", "protein_name": "Probable leucine-rich repeat receptor-like protein kinase At2g28990", "refseq_ac": "", "refseq_name": "", "gene_name": "T9I4.7", "gene_names_uniprotkb": "T9I4.7", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GNEKNVSTVVAGTPGYLDPE", "down_seq": "YQTNWLTEKSDIYSFGIVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O81069", "url": "https://www.uniprot.org/uniprotkb/O81069" } ], "site_lbl": "Tyr750" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "177", "end_pos": "177" }, { "start_pos": "217", "end_pos": "217" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "334", "end_pos": "334" }, { "start_pos": "418", "end_pos": "418" }, { "start_pos": "427", "end_pos": "427" }, { "start_pos": "438", "end_pos": "438" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "464", "end_pos": "464" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "742", "end_pos": "742" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "568", "end_pos": "568" }, { "start_pos": "650", "end_pos": "650" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "737", "end_pos": "737" }, { "start_pos": "742", "end_pos": "742" }, { "start_pos": "750", "end_pos": "750" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "O81069-1.736.736", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "O81069-1.737.737", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "O81069-1.742.742", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O81270-1.109.109", "start_pos": 109, "end_pos": 109, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGLRMLGFNIIGSLIIAAVI", "down_seq": "LTLSYATLPGWLPSPFFPIY", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "V", "comment": "No effect on molecular weight; when associated with V-15 and V-116.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O81270-1.116.116", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.116.116", "start_pos": 116, "end_pos": 116, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FNIIGSLIIAAVINLTLSYA", "down_seq": "LPGWLPSPFFPIYIHNIHKS", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "V", "comment": "No effect on molecular weight; when associated with V-15 and V-109.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O81270-1.109.109", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "O81270-1.131.131", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O81270-1.134.134", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.131.131", "start_pos": 131, "end_pos": 131, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "TLSYATLPGWLPSPFFPIYI", "down_seq": "NIHKSKHGSDSKTYDNEGRF", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "V", "comment": "No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "O81270-1.116.116", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "O81270-1.134.134", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "O81270-1.138.138", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "YATLPGWLPSPFFPIYIHNI", "down_seq": "KSKHGSDSKTYDNEGRFMPV", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "V", "comment": "No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O81270-1.116.116", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "O81270-1.131.131", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81270-1.138.138", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "PGWLPSPFFPIYIHNIHKSK", "down_seq": "GSDSKTYDNEGRFMPVNLEL", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "V", "comment": "Decreased heme binding and total loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O81270-1.131.131", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "O81270-1.134.134", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MGSKTEMMERDAMA", "down_seq": "VAPYAPVTYHRRARVDLDDR", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "V", "comment": "No effect on molecular weight; when associated with V-109 and V-116.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.196.196", "start_pos": 196, "end_pos": 196, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LWEMTEGNRDAWDIFGWIAG", "down_seq": "IEWGLLYLLARDEEGFLSKE", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "V", "comment": "No effect on molecular weight.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.221.221", "start_pos": 221, "end_pos": 221, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "LLYLLARDEEGFLSKEAIRR", "down_seq": "FDGSLFEYCAKIYAGISEDK", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "G", "comment": "No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O81270-1.225.225", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "O81270-1.230.230", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "EGFLSKEAIRRCFDGSLFEY", "down_seq": "AKIYAGISEDKTAYY", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "G", "comment": "No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "O81270-1.221.221", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81270-1.225.225", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "LDDRLPKPYMPRALQAPDRE", "down_seq": "PYGTPGHKNYGLSVLQQHVS", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "V", "comment": "No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "O81270-1.59.59", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "O81270-1.70.70", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.59.59", "start_pos": 59, "end_pos": 59, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "PYMPRALQAPDREHPYGTPG", "down_seq": "KNYGLSVLQQHVSFFDIDDN", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "V", "comment": "No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "O81270-1.52.52", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "O81270-1.70.70", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "O81270-1.75.75", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "REHPYGTPGHKNYGLSVLQQ", "down_seq": "VSFFDIDDNGIIYPWETYSG", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "V", "comment": "Total loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "O81270-1.52.52", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "O81270-1.59.59", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81270-1.75.75", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.75.75", "start_pos": 75, "end_pos": 75, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Plant seed peroxygenase is an original heme-oxygenase with an EF-hand calcium binding motif.", "journal": "The Journal of biological chemistry", "date": "2006-11-03", "authors": "Hanano Abdulsamie, Burcklen Michel, Flenet Martine, Ivancich Anabella, Louwagie Mathilde, Garin J\u00e9r\u00f4me, Bl\u00e9e Elizabeth", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "reference": [ { "type": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "GTPGHKNYGLSVLQQHVSFF", "down_seq": "IDDNGIIYPWETYSGLRMLG", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "V", "comment": "No effect on activity.", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "16956885", "url": "https://glygen.org/publication/PubMed/16956885" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "O81270-1.59.59", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "O81270-1.70.70", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81270-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "O81270-1", "length": 245, "uniprot_id": "PXG1_ARATH", "protein_name": "Peroxygenase 1", "refseq_ac": "NP_194404", "refseq_name": "peroxygenase 1", "gene_name": "PXG1", "gene_names_uniprotkb": "PXG1; ATS1; CLO1; F10M23.80", "gene_names_refseq": "ARABIDOPSIS THALIANA PEROXYGENASE 1; ATPXG1; ATS1; AtCLO1; CALEOSIN1; CLO1; F10M23.80; F10M23_80; seed gene 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural properties of caleosin: a MS and CD study.", "journal": "Archives of biochemistry and biophysics", "date": "2007-08-15", "authors": "Purkrtova Zita, d'Andrea Sabine, Jolivet Pascale, Lipovova Petra, Kralova Blanka, Kodicek Milan, Chardot Thierry", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "iPTMnet", "id": "O81270", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81270" } ], "reference": [ { "type": "PubMed", "id": "17582382", "url": "https://glygen.org/publication/PubMed/17582382" } ] } ], "crossref": [ { "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17582382", "url": "https://glygen.org/publication/PubMed/17582382", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81270", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81270", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LARDEEGFLSKEAIRRCFDG", "down_seq": "LFEYCAKIYAGISEDKTAYY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O81270", "url": "https://www.uniprot.org/uniprotkb/O81270" }, { "database": "PubMed", "id": "17582382", "url": "https://glygen.org/publication/PubMed/17582382" }, { "database": "iPTMnet", "id": "O81270", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81270" } ], "site_lbl": "Ser225" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "109", "end_pos": "109" }, { "start_pos": "116", "end_pos": "116" }, { "start_pos": "131", "end_pos": "131" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "221", "end_pos": "221" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "59", "end_pos": "59" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "75", "end_pos": "75" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "225", "end_pos": "225" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O81270-1.221.221", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O81270-1.230.230", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81439-1.110.110", "start_pos": 110, "end_pos": 110, "uniprot_canonical_ac": "O81439-1", "length": 318, "uniprot_id": "PAP1_ARATH", "protein_name": "Probable plastid-lipid-associated protein 1, chloroplastic", "refseq_ac": "NP_192311", "refseq_name": "fibrillin", "gene_name": "PAP1", "gene_names_uniprotkb": "PAP1; FBN1a; FIB1a; PGL35; T24H24.16", "gene_names_refseq": "FIB1a; FIB; PGL35; T24H24.16; T24H24_16; fibrillin 1a; fibrillin; plastoglobulin 35", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81439", "url": "https://www.uniprot.org/uniprotkb/O81439" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ETERLKRSLADSLYGTDRGL", "down_seq": "VSSDTRAEISELITQLESKN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser110" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "57", "end_pos": "57" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81439-1.57.57", "start_pos": 57, "end_pos": 57, "uniprot_canonical_ac": "O81439-1", "length": 318, "uniprot_id": "PAP1_ARATH", "protein_name": "Probable plastid-lipid-associated protein 1, chloroplastic", "refseq_ac": "NP_192311", "refseq_name": "fibrillin", "gene_name": "PAP1", "gene_names_uniprotkb": "PAP1; FBN1a; FIB1a; PGL35; T24H24.16", "gene_names_refseq": "FIB1a; FIB; PGL35; T24H24.16; T24H24_16; fibrillin 1a; fibrillin; plastoglobulin 35", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81439", "url": "https://www.uniprot.org/uniprotkb/O81439" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "O81439", "url": "https://www.uniprot.org/uniprotkb/O81439" }, { "database": "iPTMnet", "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "O81439", "url": "https://www.uniprot.org/uniprotkb/O81439", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "INRRSEIGVSVHRPDFKIRA", "down_seq": "DIDDEWGQDGVERVFASSST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O81439", "url": "https://www.uniprot.org/uniprotkb/O81439" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "O81439", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O81439" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr57" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "110", "end_pos": "110" }, { "start_pos": "57", "end_pos": "57" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81836-1.310.310", "start_pos": 310, "end_pos": 310, "uniprot_canonical_ac": "O81836-1", "length": 314, "uniprot_id": "SPL_ARATH", "protein_name": "Protein SPOROCYTELESS", "refseq_ac": "NP_194463", "refseq_name": "sporocyteless (SPL)", "gene_name": "SPL", "gene_names_uniprotkb": "SPL; F27G19.11; NZZ", "gene_names_refseq": "F27G19.11; NOZZLE; NZZ; SPL; SPOROCYTELESS", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The molecular mechanism of sporocyteless/nozzle in controlling Arabidopsis ovule development.", "journal": "Cell research", "date": "2015-01", "authors": "Wei Baoye, Zhang Jinzhe, Pang Changxu, Yu Hao, Guo Dongshu, Jiang Hao, Ding Mingxin, Chen Zhuoyao, Tao Qing, Gu Hongya, Qu Li-Jia, Qin Genji", "evidence": [ { "database": "UniProtKB", "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836" } ], "reference": [ { "type": "PubMed", "id": "25378179", "url": "https://glygen.org/publication/PubMed/25378179" } ] } ], "crossref": [ { "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25378179", "url": "https://glygen.org/publication/PubMed/25378179", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "VSVVAKTSSLVGDCSPNTID", "down_seq": "SLKL", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of interaction with TPL and loss of repression activity; when associated with A-312 and A-314.", "evidence": [ { "database": "UniProtKB", "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836" }, { "database": "PubMed", "id": "25378179", "url": "https://glygen.org/publication/PubMed/25378179" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "310", "end_pos": "310" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "314", "end_pos": "314" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "O81836-1.312.312", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "O81836-1.314.314", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81836-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "O81836-1", "length": 314, "uniprot_id": "SPL_ARATH", "protein_name": "Protein SPOROCYTELESS", "refseq_ac": "NP_194463", "refseq_name": "sporocyteless (SPL)", "gene_name": "SPL", "gene_names_uniprotkb": "SPL; F27G19.11; NZZ", "gene_names_refseq": "F27G19.11; NOZZLE; NZZ; SPL; SPOROCYTELESS", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The molecular mechanism of sporocyteless/nozzle in controlling Arabidopsis ovule development.", "journal": "Cell research", "date": "2015-01", "authors": "Wei Baoye, Zhang Jinzhe, Pang Changxu, Yu Hao, Guo Dongshu, Jiang Hao, Ding Mingxin, Chen Zhuoyao, Tao Qing, Gu Hongya, Qu Li-Jia, Qin Genji", "evidence": [ { "database": "UniProtKB", "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836" } ], "reference": [ { "type": "PubMed", "id": "25378179", "url": "https://glygen.org/publication/PubMed/25378179" } ] } ], "crossref": [ { "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25378179", "url": "https://glygen.org/publication/PubMed/25378179", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "VVAKTSSLVGDCSPNTIDLS", "down_seq": "KL", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of interaction with TPL and loss of repression activity; when associated with A-310 and A-314.", "evidence": [ { "database": "UniProtKB", "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836" }, { "database": "PubMed", "id": "25378179", "url": "https://glygen.org/publication/PubMed/25378179" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "310", "end_pos": "310" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "314", "end_pos": "314" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O81836-1.310.310", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O81836-1.314.314", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O81836-1.314.314", "start_pos": 314, "end_pos": 314, "uniprot_canonical_ac": "O81836-1", "length": 314, "uniprot_id": "SPL_ARATH", "protein_name": "Protein SPOROCYTELESS", "refseq_ac": "NP_194463", "refseq_name": "sporocyteless (SPL)", "gene_name": "SPL", "gene_names_uniprotkb": "SPL; F27G19.11; NZZ", "gene_names_refseq": "F27G19.11; NOZZLE; NZZ; SPL; SPOROCYTELESS", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The molecular mechanism of sporocyteless/nozzle in controlling Arabidopsis ovule development.", "journal": "Cell research", "date": "2015-01", "authors": "Wei Baoye, Zhang Jinzhe, Pang Changxu, Yu Hao, Guo Dongshu, Jiang Hao, Ding Mingxin, Chen Zhuoyao, Tao Qing, Gu Hongya, Qu Li-Jia, Qin Genji", "evidence": [ { "database": "UniProtKB", "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836" } ], "reference": [ { "type": "PubMed", "id": "25378179", "url": "https://glygen.org/publication/PubMed/25378179" } ] } ], "crossref": [ { "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25378179", "url": "https://glygen.org/publication/PubMed/25378179", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "AKTSSLVGDCSPNTIDLSLK", "down_seq": "", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of interaction with TPL and loss of repression activity; when associated with A-310 and A-312.", "evidence": [ { "database": "UniProtKB", "id": "O81836", "url": "https://www.uniprot.org/uniprotkb/O81836" }, { "database": "PubMed", "id": "25378179", "url": "https://glygen.org/publication/PubMed/25378179" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "310", "end_pos": "310" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "314", "end_pos": "314" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O81836-1.310.310", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "O81836-1.312.312", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82277-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "O82277-1", "length": 361, "uniprot_id": "TCP10_ARATH", "protein_name": "Transcription factor TCP10", "refseq_ac": "NP_565712", "refseq_name": "TCP domain protein 10", "gene_name": "TCP10", "gene_names_uniprotkb": "TCP10; T16B12.12", "gene_names_refseq": "T16B12.12; T16B12_12; TCP domain protein 10; TCP10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82277", "url": "https://www.uniprot.org/uniprotkb/O82277" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IDKLELGETTTTTTRQEPVN", "down_seq": "KPESPTLVFQRENNDQTQFV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr104" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "O82277-1.108.108", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82277-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "O82277-1", "length": 361, "uniprot_id": "TCP10_ARATH", "protein_name": "Transcription factor TCP10", "refseq_ac": "NP_565712", "refseq_name": "TCP domain protein 10", "gene_name": "TCP10", "gene_names_uniprotkb": "TCP10; T16B12.12", "gene_names_refseq": "T16B12.12; T16B12_12; TCP domain protein 10; TCP10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82277", "url": "https://www.uniprot.org/uniprotkb/O82277" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELGETTTTTTRQEPVNTKPE", "down_seq": "PTLVFQRENNDQTQFVAANL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser108" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "O82277-1.104.104", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82277-1.353.353", "start_pos": 353, "end_pos": 353, "uniprot_canonical_ac": "O82277-1", "length": 361, "uniprot_id": "TCP10_ARATH", "protein_name": "Transcription factor TCP10", "refseq_ac": "NP_565712", "refseq_name": "TCP domain protein 10", "gene_name": "TCP10", "gene_names_uniprotkb": "TCP10; T16B12.12", "gene_names_refseq": "T16B12.12; T16B12_12; TCP domain protein 10; TCP10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82277", "url": "https://www.uniprot.org/uniprotkb/O82277" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LSFPNTTRLLHGEEATQPNS", "down_seq": "SSPPNSHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser353" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "O82277-1.354.354", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "O82277-1.355.355", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82277-1.354.354", "start_pos": 354, "end_pos": 354, "uniprot_canonical_ac": "O82277-1", "length": 361, "uniprot_id": "TCP10_ARATH", "protein_name": "Transcription factor TCP10", "refseq_ac": "NP_565712", "refseq_name": "TCP domain protein 10", "gene_name": "TCP10", "gene_names_uniprotkb": "TCP10; T16B12.12", "gene_names_refseq": "T16B12.12; T16B12_12; TCP domain protein 10; TCP10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82277", "url": "https://www.uniprot.org/uniprotkb/O82277" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SFPNTTRLLHGEEATQPNSS", "down_seq": "SPPNSHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser354" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "O82277-1.353.353", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "O82277-1.355.355", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82277-1.355.355", "start_pos": 355, "end_pos": 355, "uniprot_canonical_ac": "O82277-1", "length": 361, "uniprot_id": "TCP10_ARATH", "protein_name": "Transcription factor TCP10", "refseq_ac": "NP_565712", "refseq_name": "TCP domain protein 10", "gene_name": "TCP10", "gene_names_uniprotkb": "TCP10; T16B12.12", "gene_names_refseq": "T16B12.12; T16B12_12; TCP domain protein 10; TCP10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82277", "url": "https://www.uniprot.org/uniprotkb/O82277" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FPNTTRLLHGEEATQPNSSS", "down_seq": "PPNSHL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O82277", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O82277" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser355" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "O82277-1.353.353", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "O82277-1.354.354", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82318-1.103.103", "start_pos": 103, "end_pos": 103, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NMSGQILTAATFRLPFLQTI", "down_seq": "LSNNNLSGPIPHDIFTTSSP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn103", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O82318-1.83.83", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "O82318-1.108.108", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ILTAATFRLPFLQTINLSNN", "down_seq": "LSGPIPHDIFTTSSPSLRYL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn108", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O82318-1.103.103", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LSGPIPHDIFTTSSPSLRYL", "down_seq": "LSNNNFSGSIPRGFLPNLYT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn129", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "O82318-1.134.134", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PHDIFTTSSPSLRYLNLSNN", "down_seq": "FSGSIPRGFLPNLYTLDLSN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn134", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "O82318-1.129.129", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LRVLDLGGNVLTGHVPGYLG", "down_seq": "LSRLEFLTLASNQLTGGVPV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn191", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.228.228", "start_pos": 228, "end_pos": 228, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GVPVELGKMKNLKWIYLGYN", "down_seq": "LSGEIPYQIGGLSSLNHLDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn228", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.252.252", "start_pos": 252, "end_pos": 252, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EIPYQIGGLSSLNHLDLVYN", "down_seq": "LSGPIPPSLGDLKKLEYMFL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn252", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.324.324", "start_pos": 324, "end_pos": 324, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EIPELVAQMQSLEILHLFSN", "down_seq": "LTGKIPEGVTSLPRLKVLQL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn324", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.362.362", "start_pos": 362, "end_pos": 362, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LQLWSNRFSGGIPANLGKHN", "down_seq": "LTVLDLSTNNLTGKLPDTLC", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn362", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "O82318-1.372.372", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.372.372", "start_pos": 372, "end_pos": 372, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GIPANLGKHNNLTVLDLSTN", "down_seq": "LTGKLPDTLCDSGHLTKLIL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn372", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "O82318-1.362.362", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.537.537", "start_pos": 537, "end_pos": 537, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VIPRELSSCKNLVNLDLSHN", "down_seq": "FTGEIPSSFAEFQVLSDLDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn537", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.580.580", "start_pos": 580, "end_pos": 580, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NQLSGEIPKNLGNIESLVQV", "down_seq": "ISHNLLHGSLPFTGAFLAIN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn580", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "O82318-1.600.600", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.600.600", "start_pos": 600, "end_pos": 600, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NISHNLLHGSLPFTGAFLAI", "down_seq": "ATAVEGNIDLCSENSASGLR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn600", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "O82318-1.580.580", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSWSYSSTNDVCLWSGVVCN", "down_seq": "ISRVVSLDLSGKNMSGQILT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn70", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "O82318-1.83.83", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WSGVVCNNISRVVSLDLSGK", "down_seq": "MSGQILTAATFRLPFLQTIN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn83", "evidence": [ { "id": "O82318", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O82318#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "O82318-1.70.70", "categories": [ "glycosylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "O82318-1.103.103", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.717.717", "start_pos": 717, "end_pos": 717, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A novel pollen-pistil interaction conferring high-temperature tolerance during reproduction via CLE45 signaling.", "journal": "Current biology : CB", "date": "2013-09-09", "authors": "Endo Satoshi, Shinohara Hidefumi, Matsubayashi Yoshikatsu, Fukuda Hiroo", "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "reference": [ { "type": "PubMed", "id": "23910659", "url": "https://glygen.org/publication/PubMed/23910659" } ] } ], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23910659", "url": "https://glygen.org/publication/PubMed/23910659", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LSSLKDQNVLVDKNGVHFVV", "down_seq": "EVKKYDSLPEMISDMRKLSD", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "In KDSKM1; lost kinase activity (kinase-dead). High-temperature exposure (HTE) mediated reduction in seeds number.", "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" }, { "database": "PubMed", "id": "23910659", "url": "https://glygen.org/publication/PubMed/23910659" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "O82318-1.692.692", "start_pos": 692, "end_pos": 692, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QEDGTKWETQFFDSKFMKSF", "down_seq": "VNTILSSLKDQNVLVDKNGV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "site_lbl": "Thr692" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82318-1.834.834", "start_pos": 834, "end_pos": 834, "uniprot_canonical_ac": "O82318-1", "length": 960, "uniprot_id": "SKM1_ARATH", "protein_name": "Leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1", "refseq_ac": "NP_180150", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "SKM1", "gene_names_uniprotkb": "SKM1; F17H15.18", "gene_names_refseq": "F17H15.18; F17H15_18; SKM1; STERILITY-REGULATING KINASE MEMBER 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VTDEPRLCLGLPGLLCMDAA", "down_seq": "MAPETREHKEMTSKSDIYGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "O82318", "url": "https://www.uniprot.org/uniprotkb/O82318" } ], "site_lbl": "Tyr834" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "108", "end_pos": "108" }, { "start_pos": "129", "end_pos": "129" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "228", "end_pos": "228" }, { "start_pos": "252", "end_pos": "252" }, { "start_pos": "324", "end_pos": "324" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "372", "end_pos": "372" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "600", "end_pos": "600" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "83", "end_pos": "83" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "717", "end_pos": "717" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "692", "end_pos": "692" }, { "start_pos": "834", "end_pos": "834" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "O82804-1.66.73", "start_pos": 66, "end_pos": 73, "uniprot_canonical_ac": "O82804-1", "length": 695, "uniprot_id": "ELF3_ARATH", "protein_name": "Protein EARLY FLOWERING 3", "refseq_ac": "NP_180164", "refseq_name": "hydroxyproline-rich glycoprotein family protein", "gene_name": "ELF3", "gene_names_uniprotkb": "ELF3; F17H15.25; PYK20; T19L18.26", "gene_names_refseq": "EARLY FLOWERING 3; ELF3; F17H15.25; PYK20", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82804", "url": "https://www.uniprot.org/uniprotkb/O82804" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "O82804", "url": "https://www.uniprot.org/uniprotkb/O82804", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "VHPGPSSQ", "start_aa": "V", "up_seq": "SQRFGDHGTMNSRSNNTSTL", "down_seq": "PCGVERNLSVQHLDSSAANQ", "mutagenesis": [ { "sequence_org": "VHPGPSSQ", "sequence_mut": "", "comment": "In elf3-7; causes early flowering and long hypocotyl phenotypes.", "evidence": [ { "database": "UniProtKB", "id": "O82804", "url": "https://www.uniprot.org/uniprotkb/O82804" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "66", "end_pos": "73" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P18064-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "P18064-1", "length": 383, "uniprot_id": "GPA1_ARATH", "protein_name": "Guanine nucleotide-binding protein alpha-1 subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "GPA1", "gene_names_uniprotkb": "GPA1; T1D16.6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P18064", "url": "https://www.uniprot.org/uniprotkb/P18064" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MGLLCSRSRHH", "down_seq": "EDTDENTQAAEIERRIEQEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr12" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P18064-1.15.15", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P18064-1.19.19", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P18064-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "P18064-1", "length": 383, "uniprot_id": "GPA1_ARATH", "protein_name": "Guanine nucleotide-binding protein alpha-1 subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "GPA1", "gene_names_uniprotkb": "GPA1; T1D16.6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P18064", "url": "https://www.uniprot.org/uniprotkb/P18064" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MGLLCSRSRHHTED", "down_seq": "DENTQAAEIERRIEQEAKAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr15" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P18064-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P18064-1.19.19", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P18064-1.166.166", "start_pos": 166, "end_pos": 166, "uniprot_canonical_ac": "P18064-1", "length": 383, "uniprot_id": "GPA1_ARATH", "protein_name": "Guanine nucleotide-binding protein alpha-1 subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "GPA1", "gene_names_uniprotkb": "GPA1; T1D16.6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P18064", "url": "https://www.uniprot.org/uniprotkb/P18064" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] }, { "title": "Tyrosine phosphorylation switching of a G protein.", "journal": "The Journal of biological chemistry", "date": "2018-03-30", "authors": "Li Bo, Tunc-Ozdemir Meral, Urano Daisuke, Jia Haiyan, Werth Emily G, Mowrey David D, Hicks Leslie M, Dokholyan Nikolay V, Torres Matthew P, Jones Alan M", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" } ], "reference": [ { "type": "PubMed", "id": "29382719", "url": "https://glygen.org/publication/PubMed/29382719" } ] } ], "crossref": [ { "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29382719", "url": "https://glygen.org/publication/PubMed/29382719", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PAIQETCARGNELQVPDCTK", "down_seq": "LMENLKRLSDINYIPTKEDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" }, { "database": "PubMed", "id": "29382719", "url": "https://glygen.org/publication/PubMed/29382719" } ], "site_lbl": "Tyr166" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P18064-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "P18064-1", "length": 383, "uniprot_id": "GPA1_ARATH", "protein_name": "Guanine nucleotide-binding protein alpha-1 subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "GPA1", "gene_names_uniprotkb": "GPA1; T1D16.6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P18064", "url": "https://www.uniprot.org/uniprotkb/P18064" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] } ], "crossref": [ { "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MGLLCSRSRHHTEDTDEN", "down_seq": "QAAEIERRIEQEAKAEKHIR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ], "site_lbl": "Thr19" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P18064-1.12.12", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P18064-1.15.15", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P18064-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "P18064-1", "length": 383, "uniprot_id": "GPA1_ARATH", "protein_name": "Guanine nucleotide-binding protein alpha-1 subunit", "refseq_ac": "", "refseq_name": "", "gene_name": "GPA1", "gene_names_uniprotkb": "GPA1; T1D16.6", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P18064", "url": "https://www.uniprot.org/uniprotkb/P18064" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EQEAKAEKHIRKLLLLGAGE", "down_seq": "GKSTIFKQIKLLFQTGFDEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P18064", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P18064" } ], "site_lbl": "Ser49" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "12", "end_pos": "12" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "166", "end_pos": "166" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "49", "end_pos": "49" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P27323-1.219.219", "start_pos": 219, "end_pos": 219, "uniprot_canonical_ac": "P27323-1", "length": 700, "uniprot_id": "HS901_ARATH", "protein_name": "Heat shock protein 90-1", "refseq_ac": "", "refseq_name": "", "gene_name": "HSP90-1", "gene_names_uniprotkb": "HSP90-1; F6N7.13; HSP81-1; HSP83", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P27323", "url": "https://www.uniprot.org/uniprotkb/P27323" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P27323", "url": "https://www.uniprot.org/uniprotkb/P27323" }, { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "P27323", "url": "https://www.uniprot.org/uniprotkb/P27323" }, { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "P27323", "url": "https://www.uniprot.org/uniprotkb/P27323" }, { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P27323", "url": "https://www.uniprot.org/uniprotkb/P27323", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEFISYPIYLWTEKTTEKEI", "down_seq": "DDEDEDEPKKENEGEVEEVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P27323", "url": "https://www.uniprot.org/uniprotkb/P27323" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "iPTMnet", "id": "P27323", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P27323" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser219" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "219", "end_pos": "219" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P29402-1.464.464", "start_pos": 464, "end_pos": 464, "uniprot_canonical_ac": "P29402-1", "length": 530, "uniprot_id": "CALX1_ARATH", "protein_name": "Calnexin homolog 1", "refseq_ac": "NP_200987", "refseq_name": "calnexin 1", "gene_name": "CNX1", "gene_names_uniprotkb": "CNX1; MAC9.11", "gene_names_refseq": "ATCNX1; CNX1; MAC9.15; MAC9_15; calnexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FLSAYKSKITELIEKAEQQP", "down_seq": "LTIGVLVAIVVVFFSLFLKL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn464", "evidence": [ { "id": "P29402", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P29402#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P29402-1.505.505", "start_pos": 505, "end_pos": 505, "uniprot_canonical_ac": "P29402-1", "length": 530, "uniprot_id": "CALX1_ARATH", "protein_name": "Calnexin homolog 1", "refseq_ac": "NP_200987", "refseq_name": "calnexin 1", "gene_name": "CNX1", "gene_names_uniprotkb": "CNX1; MAC9.11", "gene_names_refseq": "ATCNX1; CNX1; MAC9.15; MAC9_15; calnexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402" }, { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IFGGKKAAAPVEKKKPEVAE", "down_seq": "SKSGDEAEKKEETAAPRKRQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Ser505" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P29402-1.506.506", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P29402-1.508.508", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P29402-1.518.518", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P29402-1.506.506", "start_pos": 506, "end_pos": 506, "uniprot_canonical_ac": "P29402-1", "length": 530, "uniprot_id": "CALX1_ARATH", "protein_name": "Calnexin homolog 1", "refseq_ac": "NP_200987", "refseq_name": "calnexin 1", "gene_name": "CNX1", "gene_names_uniprotkb": "CNX1; MAC9.11", "gene_names_refseq": "ATCNX1; CNX1; MAC9.15; MAC9_15; calnexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402" }, { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FGGKKAAAPVEKKKPEVAES", "down_seq": "KSGDEAEKKEETAAPRKRQP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser506" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P29402-1.505.505", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P29402-1.508.508", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P29402-1.518.518", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P29402-1.508.508", "start_pos": 508, "end_pos": 508, "uniprot_canonical_ac": "P29402-1", "length": 530, "uniprot_id": "CALX1_ARATH", "protein_name": "Calnexin homolog 1", "refseq_ac": "NP_200987", "refseq_name": "calnexin 1", "gene_name": "CNX1", "gene_names_uniprotkb": "CNX1; MAC9.11", "gene_names_refseq": "ATCNX1; CNX1; MAC9.15; MAC9_15; calnexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402" }, { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment.", "journal": "The Plant journal : for cell and molecular biology", "date": "2010-07-01", "authors": "Chen Yanmei, Hoehenwarter Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GKKAAAPVEKKKPEVAESSK", "down_seq": "GDEAEKKEETAAPRKRQPRR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20374526", "url": "https://glygen.org/publication/PubMed/20374526" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser508" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P29402-1.505.505", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P29402-1.506.506", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P29402-1.518.518", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P29402-1.518.518", "start_pos": 518, "end_pos": 518, "uniprot_canonical_ac": "P29402-1", "length": 530, "uniprot_id": "CALX1_ARATH", "protein_name": "Calnexin homolog 1", "refseq_ac": "NP_200987", "refseq_name": "calnexin 1", "gene_name": "CNX1", "gene_names_uniprotkb": "CNX1; MAC9.11", "gene_names_refseq": "ATCNX1; CNX1; MAC9.15; MAC9_15; calnexin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "P29402", "url": "https://www.uniprot.org/uniprotkb/P29402" }, { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KKPEVAESSKSGDEAEKKEE", "down_seq": "AAPRKRQPRRDN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P29402", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P29402" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr518" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "464", "end_pos": "464" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "505", "end_pos": "505" }, { "start_pos": "506", "end_pos": "506" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "518", "end_pos": "518" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P29402-1.505.505", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P29402-1.506.506", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P29402-1.508.508", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P37107-1.536.536", "start_pos": 536, "end_pos": 536, "uniprot_canonical_ac": "P37107-1", "length": 564, "uniprot_id": "SR54C_ARATH", "protein_name": "Signal recognition particle subunit SRP54, chloroplastic", "refseq_ac": "NP_196014", "refseq_name": "chloroplast signal recognition particle 54 kDa subunit", "gene_name": "FFC", "gene_names_uniprotkb": "FFC; CPSRP54; F8F6_150", "gene_names_refseq": "54 CHLOROPLAST PROTEIN; 54CP; CPSRP54; F8F6.150; F8F6_150; FFC; FIFTY-FOUR CHLOROPLAST HOMOLOGUE; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT; SRP54CP; chloroplast signal recognition particle 54 kDa subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A unique sequence motif in the 54-kDa subunit of the chloroplast signal recognition particle mediates binding to the 43-kDa subunit.", "journal": "The Journal of biological chemistry", "date": "2005-03-11", "authors": "Funke Silke, Knechten Thomas, Ollesch Julian, Sch\u00fcnemann Danja", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "reference": [ { "type": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] } ], "crossref": [ { "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "ALSGLEDALKAEQKAPPGTA", "down_seq": "RKRKADSRKKFVESASSKPG", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "G", "comment": "Strongly reduced binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" }, { "database": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] }, { "sequence_org": "R", "sequence_mut": "K", "comment": "Strongly reduced binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" }, { "database": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "536", "end_pos": "536" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "538", "end_pos": "540" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "400", "end_pos": "400" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P37107-1.537.537", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P37107-1.538.538", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P37107-1.538.540", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P37107-1.539.539", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P37107-1.540.540", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P37107-1.537.537", "start_pos": 537, "end_pos": 537, "uniprot_canonical_ac": "P37107-1", "length": 564, "uniprot_id": "SR54C_ARATH", "protein_name": "Signal recognition particle subunit SRP54, chloroplastic", "refseq_ac": "NP_196014", "refseq_name": "chloroplast signal recognition particle 54 kDa subunit", "gene_name": "FFC", "gene_names_uniprotkb": "FFC; CPSRP54; F8F6_150", "gene_names_refseq": "54 CHLOROPLAST PROTEIN; 54CP; CPSRP54; F8F6.150; F8F6_150; FFC; FIFTY-FOUR CHLOROPLAST HOMOLOGUE; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT; SRP54CP; chloroplast signal recognition particle 54 kDa subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A unique sequence motif in the 54-kDa subunit of the chloroplast signal recognition particle mediates binding to the 43-kDa subunit.", "journal": "The Journal of biological chemistry", "date": "2005-03-11", "authors": "Funke Silke, Knechten Thomas, Ollesch Julian, Sch\u00fcnemann Danja", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "reference": [ { "type": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] } ], "crossref": [ { "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "LSGLEDALKAEQKAPPGTAR", "down_seq": "KRKADSRKKFVESASSKPGP", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "G", "comment": "Loss of binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" }, { "database": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] }, { "sequence_org": "R", "sequence_mut": "K", "comment": "Loss of binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" }, { "database": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] }, { "sequence_org": "R", "sequence_mut": "N", "comment": "Loss of binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" }, { "database": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] }, { "sequence_org": "R", "sequence_mut": "Q", "comment": "Loss of binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" }, { "database": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "536", "end_pos": "536" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "538", "end_pos": "540" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "400", "end_pos": "400" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P37107-1.536.536", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P37107-1.538.538", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P37107-1.538.540", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P37107-1.539.539", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P37107-1.540.540", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P37107-1.538.538", "start_pos": 538, "end_pos": 538, "uniprot_canonical_ac": "P37107-1", "length": 564, "uniprot_id": "SR54C_ARATH", "protein_name": "Signal recognition particle subunit SRP54, chloroplastic", "refseq_ac": "NP_196014", "refseq_name": "chloroplast signal recognition particle 54 kDa subunit", "gene_name": "FFC", "gene_names_uniprotkb": "FFC; CPSRP54; F8F6_150", "gene_names_refseq": "54 CHLOROPLAST PROTEIN; 54CP; CPSRP54; F8F6.150; F8F6_150; FFC; FIFTY-FOUR CHLOROPLAST HOMOLOGUE; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT; SRP54CP; chloroplast signal recognition particle 54 kDa subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A unique sequence motif in the 54-kDa subunit of the chloroplast signal recognition particle mediates binding to the 43-kDa subunit.", "journal": "The Journal of biological chemistry", "date": "2005-03-11", "authors": "Funke Silke, Knechten Thomas, Ollesch Julian, Sch\u00fcnemann Danja", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "reference": [ { "type": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] } ], "crossref": [ { "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "SGLEDALKAEQKAPPGTARR", "down_seq": "RKADSRKKFVESASSKPGPR", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "M", "comment": "No effect on binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" }, { "database": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "536", "end_pos": "536" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "538", "end_pos": "540" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "400", "end_pos": "400" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P37107-1.536.536", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P37107-1.537.537", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "upstream", "id": "P37107-1.538.540", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P37107-1.539.539", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P37107-1.540.540", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P37107-1.538.540", "start_pos": 538, "end_pos": 540, "uniprot_canonical_ac": "P37107-1", "length": 564, "uniprot_id": "SR54C_ARATH", "protein_name": "Signal recognition particle subunit SRP54, chloroplastic", "refseq_ac": "NP_196014", "refseq_name": "chloroplast signal recognition particle 54 kDa subunit", "gene_name": "FFC", "gene_names_uniprotkb": "FFC; CPSRP54; F8F6_150", "gene_names_refseq": "54 CHLOROPLAST PROTEIN; 54CP; CPSRP54; F8F6.150; F8F6_150; FFC; FIFTY-FOUR CHLOROPLAST HOMOLOGUE; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT; SRP54CP; chloroplast signal recognition particle 54 kDa subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "KRK", "start_aa": "K", "up_seq": "SGLEDALKAEQKAPPGTARR", "down_seq": "ADSRKKFVESASSKPGPRGF", "mutagenesis": [ { "sequence_org": "KRK", "sequence_mut": "", "comment": "No effect on binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "536", "end_pos": "536" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "538", "end_pos": "540" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "400", "end_pos": "400" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P37107-1.536.536", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P37107-1.537.537", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "downstream", "id": "P37107-1.538.538", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P37107-1.539.539", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "upstream", "id": "P37107-1.540.540", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P37107-1.539.539", "start_pos": 539, "end_pos": 539, "uniprot_canonical_ac": "P37107-1", "length": 564, "uniprot_id": "SR54C_ARATH", "protein_name": "Signal recognition particle subunit SRP54, chloroplastic", "refseq_ac": "NP_196014", "refseq_name": "chloroplast signal recognition particle 54 kDa subunit", "gene_name": "FFC", "gene_names_uniprotkb": "FFC; CPSRP54; F8F6_150", "gene_names_refseq": "54 CHLOROPLAST PROTEIN; 54CP; CPSRP54; F8F6.150; F8F6_150; FFC; FIFTY-FOUR CHLOROPLAST HOMOLOGUE; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT; SRP54CP; chloroplast signal recognition particle 54 kDa subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A unique sequence motif in the 54-kDa subunit of the chloroplast signal recognition particle mediates binding to the 43-kDa subunit.", "journal": "The Journal of biological chemistry", "date": "2005-03-11", "authors": "Funke Silke, Knechten Thomas, Ollesch Julian, Sch\u00fcnemann Danja", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "reference": [ { "type": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] } ], "crossref": [ { "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "GLEDALKAEQKAPPGTARRK", "down_seq": "KADSRKKFVESASSKPGPRG", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "G", "comment": "Reduced binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" }, { "database": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] }, { "sequence_org": "R", "sequence_mut": "K", "comment": "Reduced binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" }, { "database": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "536", "end_pos": "536" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "538", "end_pos": "540" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "400", "end_pos": "400" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P37107-1.536.536", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P37107-1.537.537", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P37107-1.538.538", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P37107-1.538.540", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P37107-1.540.540", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P37107-1.540.540", "start_pos": 540, "end_pos": 540, "uniprot_canonical_ac": "P37107-1", "length": 564, "uniprot_id": "SR54C_ARATH", "protein_name": "Signal recognition particle subunit SRP54, chloroplastic", "refseq_ac": "NP_196014", "refseq_name": "chloroplast signal recognition particle 54 kDa subunit", "gene_name": "FFC", "gene_names_uniprotkb": "FFC; CPSRP54; F8F6_150", "gene_names_refseq": "54 CHLOROPLAST PROTEIN; 54CP; CPSRP54; F8F6.150; F8F6_150; FFC; FIFTY-FOUR CHLOROPLAST HOMOLOGUE; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT; SRP54CP; chloroplast signal recognition particle 54 kDa subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A unique sequence motif in the 54-kDa subunit of the chloroplast signal recognition particle mediates binding to the 43-kDa subunit.", "journal": "The Journal of biological chemistry", "date": "2005-03-11", "authors": "Funke Silke, Knechten Thomas, Ollesch Julian, Sch\u00fcnemann Danja", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "reference": [ { "type": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] } ], "crossref": [ { "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LEDALKAEQKAPPGTARRKR", "down_seq": "ADSRKKFVESASSKPGPRGF", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "M", "comment": "No effect on binding to CAO/cpSRP43.", "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" }, { "database": "PubMed", "id": "15632183", "url": "https://glygen.org/publication/PubMed/15632183" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "536", "end_pos": "536" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "538", "end_pos": "540" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "400", "end_pos": "400" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P37107-1.536.536", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P37107-1.537.537", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P37107-1.538.538", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "downstream", "id": "P37107-1.538.540", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P37107-1.539.539", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P37107-1.400.400", "start_pos": 400, "end_pos": 400, "uniprot_canonical_ac": "P37107-1", "length": 564, "uniprot_id": "SR54C_ARATH", "protein_name": "Signal recognition particle subunit SRP54, chloroplastic", "refseq_ac": "NP_196014", "refseq_name": "chloroplast signal recognition particle 54 kDa subunit", "gene_name": "FFC", "gene_names_uniprotkb": "FFC; CPSRP54; F8F6_150", "gene_names_refseq": "54 CHLOROPLAST PROTEIN; 54CP; CPSRP54; F8F6.150; F8F6_150; FFC; FIFTY-FOUR CHLOROPLAST HOMOLOGUE; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN; SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT; SRP54CP; chloroplast signal recognition particle 54 kDa subunit", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P37107", "url": "https://www.uniprot.org/uniprotkb/P37107" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "P37107", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37107" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "P37107", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37107", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKATEVMRQEDAEDLQKKIM", "down_seq": "AKFDFNDFLKQTRAVAKMGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P37107", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P37107" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser400" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "536", "end_pos": "536" }, { "start_pos": "537", "end_pos": "537" }, { "start_pos": "538", "end_pos": "538" }, { "start_pos": "538", "end_pos": "540" }, { "start_pos": "539", "end_pos": "539" }, { "start_pos": "540", "end_pos": "540" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "400", "end_pos": "400" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43298-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Crystal structure of an LRR protein with two solenoids.", "journal": "Cell research", "date": "2013-02", "authors": "Liu Peiyuan, Hu Zehan, Zhou Bin, Liu Simiao, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" }, { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "reference": [ { "type": "PubMed", "id": "23147790", "url": "https://glygen.org/publication/PubMed/23147790" } ] } ], "crossref": [ { "id": "4HQ1", "url": "https://www.rcsb.org/structure/4HQ1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4HQ1|A|158", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23147790", "url": "https://glygen.org/publication/PubMed/23147790", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QSVEIDNNPFKSWEIPESLR", "down_seq": "ASALQNFSANSANVSGSLPG", "glycosylation": [ { "glytoucan_ac": "G42466VF", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4HQ1&bu=0&command=select+.A:158;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn158", "evidence": [ { "id": "4HQ1", "database": "PDB", "url": "https://www.rcsb.org/structure/4HQ1" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn158", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" }, { "id": "23147790", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23147790" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P43298-1.164.164", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P43298-1.171.171", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43298-1.164.164", "start_pos": 164, "end_pos": 164, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NNPFKSWEIPESLRNASALQ", "down_seq": "FSANSANVSGSLPGFLGPDE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn164", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P43298-1.158.158", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P43298-1.171.171", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43298-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EIPESLRNASALQNFSANSA", "down_seq": "VSGSLPGFLGPDEFPGLSIL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn171", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P43298-1.158.158", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "P43298-1.164.164", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43298-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QVQSLWLNGQKLTGDITVLQ", "down_seq": "MTGLKEVWLHSNKFSGPLPD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn230", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43298-1.285.285", "start_pos": 285, "end_pos": 285, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Crystal structure of an LRR protein with two solenoids.", "journal": "Cell research", "date": "2013-02", "authors": "Liu Peiyuan, Hu Zehan, Zhou Bin, Liu Simiao, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" }, { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "reference": [ { "type": "PubMed", "id": "23147790", "url": "https://glygen.org/publication/PubMed/23147790" } ] } ], "crossref": [ { "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23147790", "url": "https://glygen.org/publication/PubMed/23147790", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSFTGPVPASLLSLESLKVV", "down_seq": "LTNNHLQGPVPVFKSSVSVD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn285", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" }, { "id": "23147790", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23147790" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43298-1.363.363", "start_pos": 363, "end_pos": 363, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ESWKGNDPCTNWIGIACSNG", "down_seq": "ITVISLEKMELTGTISPEFG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn363", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43298-1.397.397", "start_pos": 397, "end_pos": 397, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TISPEFGAIKSLQRIILGIN", "down_seq": "LTGMIPQELTTLPNLKTLDV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn397", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43298-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VTRIQIGHSGLQGTLSPDLR", "down_seq": "LSELERLELQWNNISGPVPS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn86", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "P43298-1.99.99", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43298-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TLSPDLRNLSELERLELQWN", "down_seq": "ISGPVPSLSGLASLQVLMLS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn99", "evidence": [ { "id": "P43298", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43298#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P43298-1.86.86", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P43298-1.516.516", "start_pos": 516, "end_pos": 516, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FLIGLLVFCWYKKRQKRFSG", "down_seq": "ESSNAVVVHPRHSGSDNESV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser516" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P43298-1.518.518", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P43298-1.519.519", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P43298-1.529.529", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P43298-1.531.531", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43298-1.518.518", "start_pos": 518, "end_pos": 518, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IGLLVFCWYKKRQKRFSGSE", "down_seq": "SNAVVVHPRHSGSDNESVKI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser518" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P43298-1.516.516", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "P43298-1.519.519", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "P43298-1.529.529", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "P43298-1.531.531", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43298-1.519.519", "start_pos": 519, "end_pos": 519, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.", "journal": "Proteomics", "date": "2009-09", "authors": "Ito Jun, Taylor Nicolas L, Castleden Ian, Weckwerth Wolfram, Millar A Harvey, Heazlewood Joshua L", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GLLVFCWYKKRQKRFSGSES", "down_seq": "NAVVVHPRHSGSDNESVKIT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" }, { "database": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser519" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P43298-1.516.516", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "P43298-1.518.518", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P43298-1.529.529", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P43298-1.531.531", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43298-1.529.529", "start_pos": 529, "end_pos": 529, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RQKRFSGSESSNAVVVHPRH", "down_seq": "GSDNESVKITVAGSSVSVGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser529" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "P43298-1.516.516", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "P43298-1.518.518", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P43298-1.519.519", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P43298-1.531.531", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P43298-1.531.531", "start_pos": 531, "end_pos": 531, "uniprot_canonical_ac": "P43298-1", "length": 942, "uniprot_id": "TMK1_ARATH", "protein_name": "Receptor protein kinase TMK1", "refseq_ac": "NP_176789", "refseq_name": "transmembrane kinase 1", "gene_name": "TMK1", "gene_names_uniprotkb": "TMK1; BLK1; F15E12.4", "gene_names_refseq": "F15E12.4; F15E12_4; TMK1; transmembrane kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P43298", "url": "https://www.uniprot.org/uniprotkb/P43298" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KRFSGSESSNAVVVHPRHSG", "down_seq": "DNESVKITVAGSSVSVGGIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43298", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43298" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser531" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "158", "end_pos": "158" }, { "start_pos": "164", "end_pos": "164" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "516", "end_pos": "516" }, { "start_pos": "518", "end_pos": "518" }, { "start_pos": "519", "end_pos": "519" }, { "start_pos": "529", "end_pos": "529" }, { "start_pos": "531", "end_pos": "531" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P43298-1.516.516", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "P43298-1.518.518", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P43298-1.519.519", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P43298-1.529.529", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.102.102", "start_pos": 102, "end_pos": 102, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "TVALVMTTAKVLTAVVSCAT", "down_seq": "LMLVHIIPDLLSVKTRELFL", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "T", "comment": "In etr1-2; ethylene insensitivity.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "P49333-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P49333-1.99.99", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "P49333-1.104.104", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P49333-1.107.107", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49333-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A copper cofactor for the ethylene receptor ETR1 from Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "1999-02-12", "authors": "Rodr\u00edguez F I, Esch J J, Hall A E, Binder B M, Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "ALVMTTAKVLTAVVSCATAL", "down_seq": "LVHIIPDLLSVKTRELFLKN", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "A", "comment": "No effect on ethylene binding.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P49333-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P49333-1.99.99", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "P49333-1.102.102", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P49333-1.107.107", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.107.107", "start_pos": 107, "end_pos": 107, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A copper cofactor for the ethylene receptor ETR1 from Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "1999-02-12", "authors": "Rodr\u00edguez F I, Esch J J, Hall A E, Binder B M, Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "MTTAKVLTAVVSCATALMLV", "down_seq": "IIPDLLSVKTRELFLKNKAA", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "No effect on ethylene binding.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P49333-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P49333-1.99.99", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "P49333-1.102.102", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P49333-1.104.104", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "A", "start_aa": "A", "up_seq": "WPADELLMKYQYISDFFIAI", "down_seq": "YFSIPLELIYFVKKSAVFPY", "mutagenesis": [ { "sequence_org": "A", "sequence_mut": "V", "comment": "In etr1-3; ethylene insensitivity.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "P49333-1.38.38", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49333-1.353.353", "start_pos": 353, "end_pos": 353, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "New insight in ethylene signaling: autokinase activity of ETR1 modulates the interaction of receptors and EIN2.", "journal": "Molecular plant", "date": "2010-09", "authors": "Bisson Melanie M A, Groth Georg", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "20591837", "url": "https://glygen.org/publication/PubMed/20591837" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20591837", "url": "https://glygen.org/publication/PubMed/20591837", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "ARREAETAIRARNDFLAVMN", "down_seq": "EMRTPMHAIIALSSLLQETE", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of phosphorylation and increased affinity toward EIN2.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "20591837", "url": "https://glygen.org/publication/PubMed/20591837" } ] }, { "sequence_org": "H", "sequence_mut": "E", "comment": "Reduced affinity toward EIN2.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "20591837", "url": "https://glygen.org/publication/PubMed/20591837" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "His", "comment": "Phosphohistidine; by autocatalysis", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "site_lbl": "His353" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.38.38", "start_pos": 38, "end_pos": 38, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A copper cofactor for the ethylene receptor ETR1 from Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "1999-02-12", "authors": "Rodr\u00edguez F I, Esch J J, Hall A E, Binder B M, Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "MKYQYISDFFIAIAYFSIPL", "down_seq": "LIYFVKKSAVFPYRWVLVQF", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "No effect on ethylene binding.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P49333-1.31.31", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ethylene-binding sites generated in yeast expressing the Arabidopsis ETR1 gene.", "journal": "Science (New York, N.Y.)", "date": "1995-12-15", "authors": "Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372" } ] }, { "title": "The ethylene response mediator ETR1 from Arabidopsis forms a disulfide-linked dimer.", "journal": "The Journal of biological chemistry", "date": "1995-05-26", "authors": "Schaller G E, Ladd A N, Lanahan M B, Spanbauer J M, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "7759498", "url": "https://glygen.org/publication/PubMed/7759498" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372", "database": "PubMed", "categories": [ "Other" ] }, { "id": "7759498", "url": "https://glygen.org/publication/PubMed/7759498", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "MEV", "down_seq": "NCIEPQWPADELLMKYQYIS", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Prevents dimerization but not ethylene binding.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372" }, { "database": "PubMed", "id": "7759498", "url": "https://glygen.org/publication/PubMed/7759498" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "P49333-1.6.6", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.62.62", "start_pos": 62, "end_pos": 62, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "FVKKSAVFPYRWVLVQFGAF", "down_seq": "VLCGATHLINLWTFTTHSRT", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "F", "comment": "In etr1-4; ethylene insensitivity.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "P49333-1.65.65", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P49333-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P49333-1.79.79", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49333-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A copper cofactor for the ethylene receptor ETR1 from Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "1999-02-12", "authors": "Rodr\u00edguez F I, Esch J J, Hall A E, Binder B M, Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] }, { "title": "Ethylene-binding sites generated in yeast expressing the Arabidopsis ETR1 gene.", "journal": "Science (New York, N.Y.)", "date": "1995-12-15", "authors": "Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395", "database": "PubMed", "categories": [ "Other" ] }, { "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "KSAVFPYRWVLVQFGAFIVL", "down_seq": "GATHLINLWTFTTHSRTVAL", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "In etr1-1; no copper binding and ethylene insensitivity.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" }, { "database": "PubMed", "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372" } ] }, { "sequence_org": "C", "sequence_mut": "Y", "comment": "In etr1-1; no copper binding and ethylene insensitivity.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" }, { "database": "PubMed", "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "P49333-1.62.62", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "P49333-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "P49333-1.79.79", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.69.69", "start_pos": 69, "end_pos": 69, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A copper cofactor for the ethylene receptor ETR1 from Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "1999-02-12", "authors": "Rodr\u00edguez F I, Esch J J, Hall A E, Binder B M, Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "FPYRWVLVQFGAFIVLCGAT", "down_seq": "LINLWTFTTHSRTVALVMTT", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "No copper binding and ethylene insensitivity.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P49333-1.62.62", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "P49333-1.65.65", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "P49333-1.79.79", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "P49333-1.87.87", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.6.6", "start_pos": 6, "end_pos": 6, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ethylene-binding sites generated in yeast expressing the Arabidopsis ETR1 gene.", "journal": "Science (New York, N.Y.)", "date": "1995-12-15", "authors": "Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372" } ] }, { "title": "The ethylene response mediator ETR1 from Arabidopsis forms a disulfide-linked dimer.", "journal": "The Journal of biological chemistry", "date": "1995-05-26", "authors": "Schaller G E, Ladd A N, Lanahan M B, Spanbauer J M, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "7759498", "url": "https://glygen.org/publication/PubMed/7759498" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372", "database": "PubMed", "categories": [ "Other" ] }, { "id": "7759498", "url": "https://glygen.org/publication/PubMed/7759498", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "MEVCN", "down_seq": "IEPQWPADELLMKYQYISDF", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Prevents dimerization but not ethylene binding.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372" }, { "database": "PubMed", "id": "7759498", "url": "https://glygen.org/publication/PubMed/7759498" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "P49333-1.4.4", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A copper cofactor for the ethylene receptor ETR1 from Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "1999-02-12", "authors": "Rodr\u00edguez F I, Esch J J, Hall A E, Binder B M, Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "GAFIVLCGATHLINLWTFTT", "down_seq": "SRTVALVMTTAKVLTAVVSC", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "P49333-1.62.62", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "P49333-1.65.65", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "P49333-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P49333-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P49333-1.99.99", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A copper cofactor for the ethylene receptor ETR1 from Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "1999-02-12", "authors": "Rodr\u00edguez F I, Esch J J, Hall A E, Binder B M, Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "ATHLINLWTFTTHSRTVALV", "down_seq": "TTAKVLTAVVSCATALMLVH", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "A", "comment": "No effect on ethylene binding.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "9974395", "url": "https://glygen.org/publication/PubMed/9974395" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "P49333-1.69.69", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "P49333-1.79.79", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "P49333-1.99.99", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "P49333-1.102.102", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "P49333-1.104.104", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "P49333-1.107.107", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Ethylene-binding sites generated in yeast expressing the Arabidopsis ETR1 gene.", "journal": "Science (New York, N.Y.)", "date": "1995-12-15", "authors": "Schaller G E, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372" } ] }, { "title": "The ethylene response mediator ETR1 from Arabidopsis forms a disulfide-linked dimer.", "journal": "The Journal of biological chemistry", "date": "1995-05-26", "authors": "Schaller G E, Ladd A N, Lanahan M B, Spanbauer J M, Bleecker A B", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "reference": [ { "type": "PubMed", "id": "7759498", "url": "https://glygen.org/publication/PubMed/7759498" } ] } ], "crossref": [ { "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372", "database": "PubMed", "categories": [ "Other" ] }, { "id": "7759498", "url": "https://glygen.org/publication/PubMed/7759498", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "HSRTVALVMTTAKVLTAVVS", "down_seq": "ATALMLVHIIPDLLSVKTRE", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "No effect on dimerization or ethylene binding.", "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" }, { "database": "PubMed", "id": "8525372", "url": "https://glygen.org/publication/PubMed/8525372" }, { "database": "PubMed", "id": "7759498", "url": "https://glygen.org/publication/PubMed/7759498" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "P49333-1.79.79", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "downstream", "id": "P49333-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P49333-1.102.102", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "P49333-1.104.104", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "P49333-1.107.107", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49333-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "P49333-1", "length": 738, "uniprot_id": "ETR1_ARATH", "protein_name": "Ethylene receptor 1", "refseq_ac": "NP_176808", "refseq_name": "Signal transduction histidine kinase, hybrid-type, ethylene sensor", "gene_name": "ETR1", "gene_names_uniprotkb": "ETR1; T27F4.9", "gene_names_refseq": "AtETR1; EIN1; ETHYLENE INSENSITIVE 1; ETHYLENE RESPONSE 1; ETHYLENE RESPONSE; ETR1; ETR; HISTIDINE KINASE ETR1; T27F4.9; T27F4_9", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49333", "url": "https://www.uniprot.org/uniprotkb/P49333" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49333", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49333", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTSRAVKISPNSPVARLRPV", "down_seq": "GKYMLGEVVAVRVPLLHLSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P49333", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49333" } ], "site_lbl": "Ser239" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "102", "end_pos": "102" }, { "start_pos": "104", "end_pos": "104" }, { "start_pos": "107", "end_pos": "107" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "38", "end_pos": "38" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "62", "end_pos": "62" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "69", "end_pos": "69" }, { "start_pos": "6", "end_pos": "6" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "239", "end_pos": "239" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49598-1.139.139", "start_pos": 139, "end_pos": 139, "uniprot_canonical_ac": "P49598-1", "length": 399, "uniprot_id": "P2C37_ARATH", "protein_name": "Protein phosphatase 2C 37", "refseq_ac": "NP_187748", "refseq_name": "protein phosphatase 2CA", "gene_name": "PP2CA", "gene_names_uniprotkb": "PP2CA; AHG3; F24K9.8", "gene_names_refseq": "AHG3; ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA; ATPP2CA; PP2CA; protein phosphatase 2CA", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutational analysis of protein phosphatase 2C involved in abscisic acid signal transduction in higher plants.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1998-02-03", "authors": "Sheen J", "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "reference": [ { "type": "PubMed", "id": "9448270", "url": "https://glygen.org/publication/PubMed/9448270" } ] }, { "title": "A protein kinase-phosphatase pair interacts with an ion channel to regulate ABA signaling in plant guard cells.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-12-15", "authors": "Lee Sung Chul, Lan Wenzhi, Buchanan Bob B, Luan Sheng", "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "reference": [ { "type": "PubMed", "id": "19955427", "url": "https://glygen.org/publication/PubMed/19955427" } ] }, { "title": "Physical and functional interaction of the Arabidopsis K(+) channel AKT2 and phosphatase AtPP2CA.", "journal": "The Plant cell", "date": "2002-05", "authors": "Ch\u00e9rel Isabelle, Michard Erwan, Platet Nadine, Mouline Karine, Alcon Carine, Sentenac Herv\u00e9, Thibaud Jean-Baptiste", "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "reference": [ { "type": "PubMed", "id": "12034902", "url": "https://glygen.org/publication/PubMed/12034902" } ] } ], "crossref": [ { "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9448270", "url": "https://glygen.org/publication/PubMed/9448270", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19955427", "url": "https://glygen.org/publication/PubMed/19955427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "12034902", "url": "https://glygen.org/publication/PubMed/12034902", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "DAVSIHPSFLQRNSENHHFY", "down_seq": "VFDGHGCSHVAEKCRERLHD", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "Loss of phosphatase activity. Loss of kinase activity but intact binding and repression of SRK2E; when associated with D-145.", "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" }, { "database": "PubMed", "id": "9448270", "url": "https://glygen.org/publication/PubMed/9448270" }, { "database": "PubMed", "id": "19955427", "url": "https://glygen.org/publication/PubMed/19955427" }, { "database": "PubMed", "id": "12034902", "url": "https://glygen.org/publication/PubMed/12034902" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "287", "end_pos": "287" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "35", "end_pos": "35" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "P49598-1.145.145", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49598-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "P49598-1", "length": 399, "uniprot_id": "P2C37_ARATH", "protein_name": "Protein phosphatase 2C 37", "refseq_ac": "NP_187748", "refseq_name": "protein phosphatase 2CA", "gene_name": "PP2CA", "gene_names_uniprotkb": "PP2CA; AHG3; F24K9.8", "gene_names_refseq": "AHG3; ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA; ATPP2CA; PP2CA; protein phosphatase 2CA", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mutational analysis of protein phosphatase 2C involved in abscisic acid signal transduction in higher plants.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1998-02-03", "authors": "Sheen J", "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "reference": [ { "type": "PubMed", "id": "9448270", "url": "https://glygen.org/publication/PubMed/9448270" } ] }, { "title": "ABA-hypersensitive germination3 encodes a protein phosphatase 2C (AtPP2CA) that strongly regulates abscisic acid signaling during germination among Arabidopsis protein phosphatase 2Cs.", "journal": "Plant physiology", "date": "2006-01", "authors": "Yoshida Tomo, Nishimura Noriyuki, Kitahata Nobutaka, Kuromori Takashi, Ito Takuya, Asami Tadao, Shinozaki Kazuo, Hirayama Takashi", "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "reference": [ { "type": "PubMed", "id": "16339800", "url": "https://glygen.org/publication/PubMed/16339800" } ] }, { "title": "A protein kinase-phosphatase pair interacts with an ion channel to regulate ABA signaling in plant guard cells.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-12-15", "authors": "Lee Sung Chul, Lan Wenzhi, Buchanan Bob B, Luan Sheng", "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "reference": [ { "type": "PubMed", "id": "19955427", "url": "https://glygen.org/publication/PubMed/19955427" } ] } ], "crossref": [ { "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9448270", "url": "https://glygen.org/publication/PubMed/9448270", "database": "PubMed", "categories": [ "Other" ] }, { "id": "16339800", "url": "https://glygen.org/publication/PubMed/16339800", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19955427", "url": "https://glygen.org/publication/PubMed/19955427", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "PSFLQRNSENHHFYGVFDGH", "down_seq": "CSHVAEKCRERLHDIVKKEV", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "Insensitive to ABA and loss of phosphatase activity. Loss of kinase activity but intact binding and repression of SRK2E; when associated with D-139.", "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" }, { "database": "PubMed", "id": "9448270", "url": "https://glygen.org/publication/PubMed/9448270" }, { "database": "PubMed", "id": "16339800", "url": "https://glygen.org/publication/PubMed/16339800" }, { "database": "PubMed", "id": "19955427", "url": "https://glygen.org/publication/PubMed/19955427" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "287", "end_pos": "287" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "35", "end_pos": "35" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "P49598-1.139.139", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49598-1.287.287", "start_pos": 287, "end_pos": 287, "uniprot_canonical_ac": "P49598-1", "length": 399, "uniprot_id": "P2C37_ARATH", "protein_name": "Protein phosphatase 2C 37", "refseq_ac": "NP_187748", "refseq_name": "protein phosphatase 2CA", "gene_name": "PP2CA", "gene_names_uniprotkb": "PP2CA; AHG3; F24K9.8", "gene_names_refseq": "AHG3; ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA; ATPP2CA; PP2CA; protein phosphatase 2CA", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ABA-hypersensitive germination3 encodes a protein phosphatase 2C (AtPP2CA) that strongly regulates abscisic acid signaling during germination among Arabidopsis protein phosphatase 2Cs.", "journal": "Plant physiology", "date": "2006-01", "authors": "Yoshida Tomo, Nishimura Noriyuki, Kitahata Nobutaka, Kuromori Takashi, Ito Takuya, Asami Tadao, Shinozaki Kazuo, Hirayama Takashi", "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "reference": [ { "type": "PubMed", "id": "16339800", "url": "https://glygen.org/publication/PubMed/16339800" } ] } ], "crossref": [ { "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16339800", "url": "https://glygen.org/publication/PubMed/16339800", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "LIRIQQAGGRVIYWDGARVL", "down_seq": "VLAMSRAIGDNYLKPYVIPD", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "In ahg3-1; hypersensitivity to ABA during seed germination, and loss of phosphatase activity.", "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" }, { "database": "PubMed", "id": "16339800", "url": "https://glygen.org/publication/PubMed/16339800" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "287", "end_pos": "287" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "35", "end_pos": "35" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P49598-1.180.180", "start_pos": 180, "end_pos": 180, "uniprot_canonical_ac": "P49598-1", "length": 399, "uniprot_id": "P2C37_ARATH", "protein_name": "Protein phosphatase 2C 37", "refseq_ac": "NP_187748", "refseq_name": "protein phosphatase 2CA", "gene_name": "PP2CA", "gene_names_uniprotkb": "PP2CA; AHG3; F24K9.8", "gene_names_refseq": "AHG3; ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA; ATPP2CA; PP2CA; protein phosphatase 2CA", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P49598", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49598", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IVKKEVEVMASDEWTETMVK", "down_seq": "FQKMDKEVSQRECNLVVNGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P49598", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49598" } ], "site_lbl": "Ser180" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "287", "end_pos": "287" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "35", "end_pos": "35" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P49598-1.35.35", "start_pos": 35, "end_pos": 35, "uniprot_canonical_ac": "P49598-1", "length": 399, "uniprot_id": "P2C37_ARATH", "protein_name": "Protein phosphatase 2C 37", "refseq_ac": "NP_187748", "refseq_name": "protein phosphatase 2CA", "gene_name": "PP2CA", "gene_names_uniprotkb": "PP2CA; AHG3; F24K9.8", "gene_names_refseq": "AHG3; ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA; ATPP2CA; PP2CA; protein phosphatase 2CA", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P49598", "url": "https://www.uniprot.org/uniprotkb/P49598" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "P49598", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49598" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "P49598", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49598", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AAPVDSTSRASLRRRLDLLP", "down_seq": "IKIVADSAVAPPLENCRKRQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P49598", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P49598" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser35" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "139", "end_pos": "139" }, { "start_pos": "145", "end_pos": "145" }, { "start_pos": "287", "end_pos": "287" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "180", "end_pos": "180" }, { "start_pos": "35", "end_pos": "35" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P92953-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "P92953-1", "length": 318, "uniprot_id": "ATHB4_ARATH", "protein_name": "Homeobox-leucine zipper protein ATHB-4", "refseq_ac": "", "refseq_name": "", "gene_name": "ATHB-4", "gene_names_uniprotkb": "ATHB-4; T13E15.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92953", "url": "https://www.uniprot.org/uniprotkb/P92953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92953", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GDGSRKKLRLSKDQALVLEE", "down_seq": "FKEHSTLNPKQKLALAKQLN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92953" } ], "site_lbl": "Thr178" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P92953-1.82.82", "start_pos": 82, "end_pos": 82, "uniprot_canonical_ac": "P92953-1", "length": 318, "uniprot_id": "ATHB4_ARATH", "protein_name": "Homeobox-leucine zipper protein ATHB-4", "refseq_ac": "", "refseq_name": "", "gene_name": "ATHB-4", "gene_names_uniprotkb": "ATHB-4; T13E15.8", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P92953", "url": "https://www.uniprot.org/uniprotkb/P92953" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P92953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92953", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HLFQSSGIKRTTAERNSDAG", "down_seq": "FLRGFNVNRAQSSVAVVDLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P92953", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P92953" } ], "site_lbl": "Ser82" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "178", "end_pos": "178" }, { "start_pos": "82", "end_pos": "82" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93654-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "P93654-1", "length": 268, "uniprot_id": "SYP22_ARATH", "protein_name": "Syntaxin-22", "refseq_ac": "NP_568671", "refseq_name": "Syntaxin/t-SNARE family protein", "gene_name": "SYP22", "gene_names_uniprotkb": "SYP22; MSD23.9; SGR3; VAM3", "gene_names_refseq": "ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22; ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3; ATSYP22; ATVAM3; SGR3; SHOOT GRAVITROPISM 3; SYNTAXIN OF PLANTS 22; SYP22; VACUOLAR MORPHOLOGY 3; VAM3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93654", "url": "https://www.uniprot.org/uniprotkb/P93654" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "P93654", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93654" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "P93654", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93654", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MIDDIGTHIDNSRAATSQGK", "down_seq": "QLVQAAKTQKSNSSLTCLLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P93654", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P93654" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser232" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "232", "end_pos": "232" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93830-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "P93830-1", "length": 229, "uniprot_id": "IAA17_ARATH", "protein_name": "Auxin-responsive protein IAA17", "refseq_ac": "NP_171921", "refseq_name": "AUX/IAA transcriptional regulator family protein", "gene_name": "IAA17", "gene_names_uniprotkb": "IAA17; AXR3; F19P19.31", "gene_names_refseq": "AUXIN RESISTANT 3; AXR3; AtIAA17; F19P19.31; F19P19_31; IAA17; indole-3-acetic acid inducible 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2014-04-08", "authors": "Korasick David A, Westfall Corey S, Lee Soon Goo, Nanao Max H, Dumas Renaud, Hagen Gretchen, Guilfoyle Thomas J, Jez Joseph M, Strader Lucia C", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "reference": [ { "type": "PubMed", "id": "24706860", "url": "https://glygen.org/publication/PubMed/24706860" } ] } ], "crossref": [ { "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24706860", "url": "https://glygen.org/publication/PubMed/24706860", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "KNVMVSCQKSSGGPEAAAFV", "down_seq": "VSMDGAPYLRKIDLRMYKSY", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "No effect on interaction with ARF7.", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" }, { "database": "PubMed", "id": "24706860", "url": "https://glygen.org/publication/PubMed/24706860" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P93830-1.118.118", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "P93830-1.121.121", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93830-1.118.118", "start_pos": 118, "end_pos": 118, "uniprot_canonical_ac": "P93830-1", "length": 229, "uniprot_id": "IAA17_ARATH", "protein_name": "Auxin-responsive protein IAA17", "refseq_ac": "NP_171921", "refseq_name": "AUX/IAA transcriptional regulator family protein", "gene_name": "IAA17", "gene_names_uniprotkb": "IAA17; AXR3; F19P19.31", "gene_names_refseq": "AUXIN RESISTANT 3; AXR3; AtIAA17; F19P19.31; F19P19_31; IAA17; indole-3-acetic acid inducible 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Changes in auxin response from mutations in an AUX/IAA gene.", "journal": "Science (New York, N.Y.)", "date": "1998-02-27", "authors": "Rouse D, Mackay P, Stirnberg P, Estelle M, Leyser O", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "reference": [ { "type": "PubMed", "id": "9478901", "url": "https://glygen.org/publication/PubMed/9478901" } ] } ], "crossref": [ { "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9478901", "url": "https://glygen.org/publication/PubMed/9478901", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "VSCQKSSGGPEAAAFVKVSM", "down_seq": "GAPYLRKIDLRMYKSYDELS", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "Suppresses the axr3-1 phenotype; when associated with L-88.", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" }, { "database": "PubMed", "id": "9478901", "url": "https://glygen.org/publication/PubMed/9478901" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P93830-1.114.114", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "P93830-1.121.121", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93830-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "P93830-1", "length": 229, "uniprot_id": "IAA17_ARATH", "protein_name": "Auxin-responsive protein IAA17", "refseq_ac": "NP_171921", "refseq_name": "AUX/IAA transcriptional regulator family protein", "gene_name": "IAA17", "gene_names_uniprotkb": "IAA17; AXR3; F19P19.31", "gene_names_refseq": "AUXIN RESISTANT 3; AXR3; AtIAA17; F19P19.31; F19P19_31; IAA17; indole-3-acetic acid inducible 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Changes in auxin response from mutations in an AUX/IAA gene.", "journal": "Science (New York, N.Y.)", "date": "1998-02-27", "authors": "Rouse D, Mackay P, Stirnberg P, Estelle M, Leyser O", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "reference": [ { "type": "PubMed", "id": "9478901", "url": "https://glygen.org/publication/PubMed/9478901" } ] } ], "crossref": [ { "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9478901", "url": "https://glygen.org/publication/PubMed/9478901", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "QKSSGGPEAAAFVKVSMDGA", "down_seq": "YLRKIDLRMYKSYDELSNAL", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "S", "comment": "Suppresses the axr3-1 phenotype; when associated with L-88.", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" }, { "database": "PubMed", "id": "9478901", "url": "https://glygen.org/publication/PubMed/9478901" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "P93830-1.114.114", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "P93830-1.118.118", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93830-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "P93830-1", "length": 229, "uniprot_id": "IAA17_ARATH", "protein_name": "Auxin-responsive protein IAA17", "refseq_ac": "NP_171921", "refseq_name": "AUX/IAA transcriptional regulator family protein", "gene_name": "IAA17", "gene_names_uniprotkb": "IAA17; AXR3; F19P19.31", "gene_names_refseq": "AUXIN RESISTANT 3; AXR3; AtIAA17; F19P19.31; F19P19_31; IAA17; indole-3-acetic acid inducible 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Changes in auxin response from mutations in an AUX/IAA gene.", "journal": "Science (New York, N.Y.)", "date": "1998-02-27", "authors": "Rouse D, Mackay P, Stirnberg P, Estelle M, Leyser O", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "reference": [ { "type": "PubMed", "id": "9478901", "url": "https://glygen.org/publication/PubMed/9478901" } ] } ], "crossref": [ { "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9478901", "url": "https://glygen.org/publication/PubMed/9478901", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "MMGSVELNLRETELC", "down_seq": "GLPGGDTVAPVTGNKRGFSE", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "F", "comment": "Suppresses the axr3-1 phenotype; when associated with L-88.", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" }, { "database": "PubMed", "id": "9478901", "url": "https://glygen.org/publication/PubMed/9478901" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93830-1.183.183", "start_pos": 183, "end_pos": 183, "uniprot_canonical_ac": "P93830-1", "length": 229, "uniprot_id": "IAA17_ARATH", "protein_name": "Auxin-responsive protein IAA17", "refseq_ac": "NP_171921", "refseq_name": "AUX/IAA transcriptional regulator family protein", "gene_name": "IAA17", "gene_names_uniprotkb": "IAA17; AXR3; F19P19.31", "gene_names_refseq": "AUXIN RESISTANT 3; AXR3; AtIAA17; F19P19.31; F19P19_31; IAA17; indole-3-acetic acid inducible 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2014-04-08", "authors": "Korasick David A, Westfall Corey S, Lee Soon Goo, Nanao Max H, Dumas Renaud, Hagen Gretchen, Guilfoyle Thomas J, Jez Joseph M, Strader Lucia C", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "reference": [ { "type": "PubMed", "id": "24706860", "url": "https://glygen.org/publication/PubMed/24706860" } ] } ], "crossref": [ { "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24706860", "url": "https://glygen.org/publication/PubMed/24706860", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "MNERKLMDLVNSWDYVPSYE", "down_seq": "KDGDWMLVGDVPWPMFVDTC", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "No effect on interaction with ARF7; when associated with A-187. Loss of interaction with ARF7; when associated with A-114 and A-187.", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" }, { "database": "PubMed", "id": "24706860", "url": "https://glygen.org/publication/PubMed/24706860" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "P93830-1.187.187", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93830-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "P93830-1", "length": 229, "uniprot_id": "IAA17_ARATH", "protein_name": "Auxin-responsive protein IAA17", "refseq_ac": "NP_171921", "refseq_name": "AUX/IAA transcriptional regulator family protein", "gene_name": "IAA17", "gene_names_uniprotkb": "IAA17; AXR3; F19P19.31", "gene_names_refseq": "AUXIN RESISTANT 3; AXR3; AtIAA17; F19P19.31; F19P19_31; IAA17; indole-3-acetic acid inducible 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2014-04-08", "authors": "Korasick David A, Westfall Corey S, Lee Soon Goo, Nanao Max H, Dumas Renaud, Hagen Gretchen, Guilfoyle Thomas J, Jez Joseph M, Strader Lucia C", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "reference": [ { "type": "PubMed", "id": "24706860", "url": "https://glygen.org/publication/PubMed/24706860" } ] } ], "crossref": [ { "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24706860", "url": "https://glygen.org/publication/PubMed/24706860", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "KLMDLVNSWDYVPSYEDKDG", "down_seq": "WMLVGDVPWPMFVDTCKRLR", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "No effect on interaction with ARF7; when associated with A-183. Loss of interaction with ARF7; when associated with A-114 and A-183.", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" }, { "database": "PubMed", "id": "24706860", "url": "https://glygen.org/publication/PubMed/24706860" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "P93830-1.183.183", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "P93830-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "P93830-1", "length": 229, "uniprot_id": "IAA17_ARATH", "protein_name": "Auxin-responsive protein IAA17", "refseq_ac": "NP_171921", "refseq_name": "AUX/IAA transcriptional regulator family protein", "gene_name": "IAA17", "gene_names_uniprotkb": "IAA17; AXR3; F19P19.31", "gene_names_refseq": "AUXIN RESISTANT 3; AXR3; AtIAA17; F19P19.31; F19P19_31; IAA17; indole-3-acetic acid inducible 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "SACPKDPAKPPAKAQVVGWP", "down_seq": "VRSYRKNVMVSCQKSSGGPE", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "L", "comment": "In axr3-1; gain of function. Affects auxin-related developmental processes. Affects photomorphogenesis.", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "P93830-1.89.89", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "P93830-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "P93830-1", "length": 229, "uniprot_id": "IAA17_ARATH", "protein_name": "Auxin-responsive protein IAA17", "refseq_ac": "NP_171921", "refseq_name": "AUX/IAA transcriptional regulator family protein", "gene_name": "IAA17", "gene_names_uniprotkb": "IAA17; AXR3; F19P19.31", "gene_names_refseq": "AUXIN RESISTANT 3; AXR3; AtIAA17; F19P19.31; F19P19_31; IAA17; indole-3-acetic acid inducible 17", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "ACPKDPAKPPAKAQVVGWPP", "down_seq": "RSYRKNVMVSCQKSSGGPEA", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "G", "comment": "In axr3-3; gain of function. Affects auxin-related developmental processes. Affects photomorphogenesis.", "evidence": [ { "database": "UniProtKB", "id": "P93830", "url": "https://www.uniprot.org/uniprotkb/P93830" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "114", "end_pos": "114" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "183", "end_pos": "183" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "P93830-1.88.88", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q0WLB5-1.442.442", "start_pos": 442, "end_pos": 442, "uniprot_canonical_ac": "Q0WLB5-1", "length": 1703, "uniprot_id": "CLAH2_ARATH", "protein_name": "Clathrin heavy chain 2", "refseq_ac": "NP_187466", "refseq_name": "Clathrin, heavy chain", "gene_name": "CHC2", "gene_names_uniprotkb": "CHC2; CHC1; F17O14.1; T8G24.1", "gene_names_refseq": "AtCHC2; CHC2; clathrin heavy chain 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WLB5", "url": "https://www.uniprot.org/uniprotkb/Q0WLB5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WLB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WLB5" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WLB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WLB5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WLB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WLB5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WLB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WLB5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GQTPPLLQYFGTLLTRGKLN", "down_seq": "YESLELSRLVVNQNKKNLLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WLB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WLB5" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser442" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WLB5-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "Q0WLB5-1", "length": 1703, "uniprot_id": "CLAH2_ARATH", "protein_name": "Clathrin heavy chain 2", "refseq_ac": "NP_187466", "refseq_name": "Clathrin, heavy chain", "gene_name": "CHC2", "gene_names_uniprotkb": "CHC2; CHC1; F17O14.1; T8G24.1", "gene_names_refseq": "AtCHC2; CHC2; clathrin heavy chain 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WLB5", "url": "https://www.uniprot.org/uniprotkb/Q0WLB5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WLB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WLB5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WLB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WLB5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WLB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WLB5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "QNSVVIIDMNMPMQPLRRPI", "down_seq": "ADSALMNPNSKILALKAQVP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WLB5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WLB5" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr67" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "442", "end_pos": "442" }, { "start_pos": "67", "end_pos": "67" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MDAFGIGSSLNQAPV", "down_seq": "QDLKKFGDNSTGNTMFDASQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr16", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q0WPK4-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q0WPK4-1.9.9", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.196.196", "start_pos": 196, "end_pos": 196, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QLHQDHNQQQFSSEPILVPK", "down_seq": "SFVSYPPPGSISPDQRLGHP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser196", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q0WPK4-1.197.197", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WPK4-1.200.200", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WPK4-1.201.201", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WPK4-1.206.206", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q0WPK4-1.208.208", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LHQDHNQQQFSSEPILVPKS", "down_seq": "FVSYPPPGSISPDQRLGHPN", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser197", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q0WPK4-1.196.196", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WPK4-1.200.200", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WPK4-1.201.201", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WPK4-1.206.206", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q0WPK4-1.208.208", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.200.200", "start_pos": 200, "end_pos": 200, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2.", "journal": "The EMBO journal", "date": "2015-03-04", "authors": "Roux Milena Edna, Rasmussen Magnus Wohlfahrt, Palma Kristoffer, Lolle Signe, Regu\u00e9 \u00c0ngels Mateu, Bethke Gerit, Glazebrook Jane, Zhang Weiping, Sieburth Leslie, Larsen Martin R, Mundy John, Petersen Morten", "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" }, { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DHNQQQFSSEPILVPKSSFV", "down_seq": "YPPPGSISPDQRLGHPNIPY", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser200", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" }, { "database": "PubMed", "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932" }, { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser200" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q0WPK4-1.196.196", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WPK4-1.197.197", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WPK4-1.201.201", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q0WPK4-1.206.206", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WPK4-1.208.208", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FSSEPILVPKSSFVSYPPPG", "down_seq": "ISPDQRLGHPNIPYQSGGPQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser206", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser206" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q0WPK4-1.196.196", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q0WPK4-1.197.197", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q0WPK4-1.200.200", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q0WPK4-1.201.201", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WPK4-1.208.208", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.340.340", "start_pos": 340, "end_pos": 340, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPLGHMPGMQPQLFNSHLSR", "down_seq": "SSSGNYDGMLGFGDLREVRP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser340", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser340" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q0WPK4-1.341.341", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WPK4-1.342.342", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WPK4-1.343.343", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q0WPK4-1.346.346", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.341.341", "start_pos": 341, "end_pos": 341, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLGHMPGMQPQLFNSHLSRS", "down_seq": "SSGNYDGMLGFGDLREVRPG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser341", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser341" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q0WPK4-1.340.340", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WPK4-1.342.342", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WPK4-1.343.343", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WPK4-1.346.346", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.342.342", "start_pos": 342, "end_pos": 342, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2.", "journal": "The EMBO journal", "date": "2015-03-04", "authors": "Roux Milena Edna, Rasmussen Magnus Wohlfahrt, Palma Kristoffer, Lolle Signe, Regu\u00e9 \u00c0ngels Mateu, Bethke Gerit, Glazebrook Jane, Zhang Weiping, Sieburth Leslie, Larsen Martin R, Mundy John, Petersen Morten", "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" }, { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGHMPGMQPQLFNSHLSRSS", "down_seq": "SGNYDGMLGFGDLREVRPGS", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser342", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" }, { "database": "PubMed", "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932" }, { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser342" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q0WPK4-1.340.340", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WPK4-1.341.341", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WPK4-1.343.343", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WPK4-1.346.346", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q0WPK4-1.362.362", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.343.343", "start_pos": 343, "end_pos": 343, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2.", "journal": "The EMBO journal", "date": "2015-03-04", "authors": "Roux Milena Edna, Rasmussen Magnus Wohlfahrt, Palma Kristoffer, Lolle Signe, Regu\u00e9 \u00c0ngels Mateu, Bethke Gerit, Glazebrook Jane, Zhang Weiping, Sieburth Leslie, Larsen Martin R, Mundy John, Petersen Morten", "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" }, { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GHMPGMQPQLFNSHLSRSSS", "down_seq": "GNYDGMLGFGDLREVRPGSG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser343", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" }, { "database": "PubMed", "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932" }, { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser343" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q0WPK4-1.340.340", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WPK4-1.341.341", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WPK4-1.342.342", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WPK4-1.346.346", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q0WPK4-1.362.362", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MDAFGIGS", "down_seq": "LNQAPVTQDLKKFGDNSTGN", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser9", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q0WPK4-1.0.0", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WPK4-1.16.16", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" }, { "database": "O-GlcNAc Atlas", "id": "Q0WPK4", "url": "https://oglcnac.org/atlas/detail/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q0WPK4", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q0WPK4" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q0WPK4-1.9.9", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q0WPK4-1.16.16", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.208.208", "start_pos": 208, "end_pos": 208, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2.", "journal": "The EMBO journal", "date": "2015-03-04", "authors": "Roux Milena Edna, Rasmussen Magnus Wohlfahrt, Palma Kristoffer, Lolle Signe, Regu\u00e9 \u00c0ngels Mateu, Bethke Gerit, Glazebrook Jane, Zhang Weiping, Sieburth Leslie, Larsen Martin R, Mundy John, Petersen Morten", "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" }, { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" }, { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-02", "authors": "Hoehenwarter Wolfgang, Thomas Martin, Nukarinen Ella, Egelhofer Volker, R\u00f6hrig Horst, Weckwerth Wolfram, Conrath Uwe, Beckers Gerold J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SEPILVPKSSFVSYPPPGSI", "down_seq": "PDQRLGHPNIPYQSGGPQMG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes phosphorylation by MPK4.", "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" }, { "database": "PubMed", "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" }, { "database": "PubMed", "id": "25603932", "url": "https://glygen.org/publication/PubMed/25603932" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23172892", "url": "https://glygen.org/publication/PubMed/23172892" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser208" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q0WPK4-1.196.196", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q0WPK4-1.197.197", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q0WPK4-1.200.200", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q0WPK4-1.201.201", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WPK4-1.206.206", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.103.103", "start_pos": 103, "end_pos": 103, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDVDDLASTFSKLNREPDVY", "down_seq": "NTGPITDRRSSQNSLAAEWT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser103" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q0WPK4-1.83.83", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WPK4-1.117.117", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.117.117", "start_pos": 117, "end_pos": 117, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "REPDVYSNTGPITDRRSSQN", "down_seq": "LAAEWTHGEELPNWYGRQIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser117" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q0WPK4-1.103.103", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.201.201", "start_pos": 201, "end_pos": 201, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HNQQQFSSEPILVPKSSFVS", "down_seq": "PPPGSISPDQRLGHPNIPYQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Tyr201" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q0WPK4-1.196.196", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WPK4-1.197.197", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WPK4-1.200.200", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WPK4-1.206.206", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WPK4-1.208.208", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.346.346", "start_pos": 346, "end_pos": 346, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PGMQPQLFNSHLSRSSSSGN", "down_seq": "DGMLGFGDLREVRPGSGHGN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr346" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q0WPK4-1.340.340", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q0WPK4-1.341.341", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WPK4-1.342.342", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WPK4-1.343.343", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q0WPK4-1.362.362", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.362.362", "start_pos": 362, "end_pos": 362, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSGNYDGMLGFGDLREVRPG", "down_seq": "GHGNRQNVRFPQQGFDAGVQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser362" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q0WPK4-1.342.342", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "Q0WPK4-1.343.343", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q0WPK4-1.346.346", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.393.393", "start_pos": 393, "end_pos": 393, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PQQGFDAGVQRRYPFRSKYM", "down_seq": "AGEIENILRMQLVATHSNDP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser393" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WPK4-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "Q0WPK4-1", "length": 793, "uniprot_id": "PAT1H_ARATH", "protein_name": "Protein PAT1 homolog", "refseq_ac": "NP_001320315", "refseq_name": "topoisomerase II-associated protein", "gene_name": "PAT1", "gene_names_uniprotkb": "PAT1; YUP8H12R.29", "gene_names_refseq": "YUP8H12R.29; YUP8H12R_29", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WPK4", "url": "https://www.uniprot.org/uniprotkb/Q0WPK4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGIAEDFSFDKEEVGDSRLL", "down_seq": "DVDDLASTFSKLNREPDVYS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WPK4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WPK4" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser83" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "16", "end_pos": "16" }, { "start_pos": "196", "end_pos": "196" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "9", "end_pos": "9" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "208", "end_pos": "208" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "200", "end_pos": "200" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "206", "end_pos": "206" }, { "start_pos": "208", "end_pos": "208" }, { "start_pos": "340", "end_pos": "340" }, { "start_pos": "341", "end_pos": "341" }, { "start_pos": "342", "end_pos": "342" }, { "start_pos": "343", "end_pos": "343" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "362", "end_pos": "362" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q0WPK4-1.103.103", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.241.241", "start_pos": 241, "end_pos": 241, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISNTLRHLNLSHNALNGKFF", "down_seq": "EESIGSFKNLEIVDLENNQI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser241" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.720.720", "start_pos": 720, "end_pos": 720, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PATSAPTNLLDDYPAASGRK", "down_seq": "SSGGSPLSSSPRFSDQPVML", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser720" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q0WR59-1.721.721", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WR59-1.722.722", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WR59-1.725.725", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WR59-1.728.728", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WR59-1.729.729", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WR59-1.730.730", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WR59-1.734.734", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.721.721", "start_pos": 721, "end_pos": 721, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATSAPTNLLDDYPAASGRKS", "down_seq": "SGGSPLSSSPRFSDQPVMLD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser721" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q0WR59-1.720.720", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WR59-1.722.722", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WR59-1.725.725", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WR59-1.728.728", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WR59-1.729.729", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WR59-1.730.730", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q0WR59-1.734.734", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.722.722", "start_pos": 722, "end_pos": 722, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TSAPTNLLDDYPAASGRKSS", "down_seq": "GGSPLSSSPRFSDQPVMLDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ], "site_lbl": "Ser722" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q0WR59-1.720.720", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WR59-1.721.721", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WR59-1.725.725", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q0WR59-1.728.728", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q0WR59-1.729.729", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WR59-1.730.730", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q0WR59-1.734.734", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.725.725", "start_pos": 725, "end_pos": 725, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PTNLLDDYPAASGRKSSSGG", "down_seq": "PLSSSPRFSDQPVMLDVYSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser725" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q0WR59-1.720.720", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WR59-1.721.721", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WR59-1.722.722", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WR59-1.728.728", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WR59-1.729.729", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WR59-1.730.730", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WR59-1.734.734", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q0WR59-1.744.744", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.728.728", "start_pos": 728, "end_pos": 728, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLDDYPAASGRKSSSGGSPL", "down_seq": "SSPRFSDQPVMLDVYSPDRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser728" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q0WR59-1.720.720", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q0WR59-1.721.721", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q0WR59-1.722.722", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WR59-1.725.725", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WR59-1.729.729", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WR59-1.730.730", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q0WR59-1.734.734", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q0WR59-1.744.744", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.729.729", "start_pos": 729, "end_pos": 729, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LDDYPAASGRKSSSGGSPLS", "down_seq": "SPRFSDQPVMLDVYSPDRLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser729" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q0WR59-1.720.720", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q0WR59-1.721.721", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q0WR59-1.722.722", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WR59-1.725.725", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WR59-1.728.728", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WR59-1.730.730", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q0WR59-1.734.734", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q0WR59-1.744.744", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.730.730", "start_pos": 730, "end_pos": 730, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDYPAASGRKSSSGGSPLSS", "down_seq": "PRFSDQPVMLDVYSPDRLAG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser730" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q0WR59-1.720.720", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q0WR59-1.721.721", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q0WR59-1.722.722", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q0WR59-1.725.725", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WR59-1.728.728", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WR59-1.729.729", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q0WR59-1.734.734", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q0WR59-1.744.744", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.734.734", "start_pos": 734, "end_pos": 734, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AASGRKSSSGGSPLSSSPRF", "down_seq": "DQPVMLDVYSPDRLAGELFF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser734" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q0WR59-1.720.720", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q0WR59-1.721.721", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q0WR59-1.722.722", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q0WR59-1.725.725", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q0WR59-1.728.728", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q0WR59-1.729.729", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q0WR59-1.730.730", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q0WR59-1.744.744", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.744.744", "start_pos": 744, "end_pos": 744, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" }, { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" }, { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" }, { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" }, { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSPLSSSPRFSDQPVMLDVY", "down_seq": "PDRLAGELFFLDVSLKLTAE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser744" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q0WR59-1.725.725", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q0WR59-1.728.728", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q0WR59-1.729.729", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q0WR59-1.730.730", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q0WR59-1.734.734", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.850.850", "start_pos": 850, "end_pos": 850, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YYWGPREQERLLLSDYLRGE", "down_seq": "LAMHLYETTPRRYSPMSFSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser850" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q0WR59-1.856.856", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q0WR59-1.858.858", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q0WR59-1.859.859", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.856.856", "start_pos": 856, "end_pos": 856, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "EQERLLLSDYLRGESLAMHL", "down_seq": "ETTPRRYSPMSFSQRLKVAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Tyr856" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q0WR59-1.850.850", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q0WR59-1.858.858", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q0WR59-1.859.859", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.858.858", "start_pos": 858, "end_pos": 858, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ERLLLSDYLRGESLAMHLYE", "down_seq": "TPRRYSPMSFSQRLKVAVEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr858" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q0WR59-1.850.850", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q0WR59-1.856.856", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q0WR59-1.859.859", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q0WR59-1.859.859", "start_pos": 859, "end_pos": 859, "uniprot_canonical_ac": "Q0WR59-1", "length": 1048, "uniprot_id": "Y5020_ARATH", "protein_name": "Probable inactive receptor kinase At5g10020", "refseq_ac": "", "refseq_name": "", "gene_name": "T31P16.10; T31P16_9", "gene_names_uniprotkb": "T31P16.10; T31P16_9", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q0WR59", "url": "https://www.uniprot.org/uniprotkb/Q0WR59" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RLLLSDYLRGESLAMHLYET", "down_seq": "PRRYSPMSFSQRLKVAVEVA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q0WR59", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q0WR59" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr859" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "241", "end_pos": "241" }, { "start_pos": "720", "end_pos": "720" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "722", "end_pos": "722" }, { "start_pos": "725", "end_pos": "725" }, { "start_pos": "728", "end_pos": "728" }, { "start_pos": "729", "end_pos": "729" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "734", "end_pos": "734" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "850", "end_pos": "850" }, { "start_pos": "856", "end_pos": "856" }, { "start_pos": "858", "end_pos": "858" }, { "start_pos": "859", "end_pos": "859" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q0WR59-1.850.850", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q0WR59-1.856.856", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q0WR59-1.858.858", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38824-1.78.78", "start_pos": 78, "end_pos": 78, "uniprot_canonical_ac": "Q38824-1", "length": 189, "uniprot_id": "IAA6_ARATH", "protein_name": "Auxin-responsive protein IAA6", "refseq_ac": "NP_175692", "refseq_name": "indole-3-acetic acid 6", "gene_name": "IAA6", "gene_names_uniprotkb": "IAA6; F14G24.10; SHY1", "gene_names_refseq": "F14G24.10; F14G24_10; IAA6; SHORT HYPOCOTYL 1; SHY1; indole-3-acetic acid 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38824", "url": "https://www.uniprot.org/uniprotkb/Q38824" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38824", "url": "https://www.uniprot.org/uniprotkb/Q38824", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "SVEDESLPVVKSQAVGWPPV", "down_seq": "SYRRKKNNEEASKAIGYVKV", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "R", "comment": "In shy1-1; gain of function. Affects auxin-related developmental processes. Affects photomorphogenesis.", "evidence": [ { "database": "UniProtKB", "id": "Q38824", "url": "https://www.uniprot.org/uniprotkb/Q38824" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q38824-1.90.90", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q38824-1.95.95", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38824-1.90.90", "start_pos": 90, "end_pos": 90, "uniprot_canonical_ac": "Q38824-1", "length": 189, "uniprot_id": "IAA6_ARATH", "protein_name": "Auxin-responsive protein IAA6", "refseq_ac": "NP_175692", "refseq_name": "indole-3-acetic acid 6", "gene_name": "IAA6", "gene_names_uniprotkb": "IAA6; F14G24.10; SHY1", "gene_names_refseq": "F14G24.10; F14G24_10; IAA6; SHORT HYPOCOTYL 1; SHY1; indole-3-acetic acid 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38824", "url": "https://www.uniprot.org/uniprotkb/Q38824" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38824", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38824", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QAVGWPPVCSYRRKKNNEEA", "down_seq": "KAIGYVKVSMDGVPYMRKID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38824", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38824" } ], "site_lbl": "Ser90" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q38824-1.78.78", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q38824-1.95.95", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38824-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "Q38824-1", "length": 189, "uniprot_id": "IAA6_ARATH", "protein_name": "Auxin-responsive protein IAA6", "refseq_ac": "NP_175692", "refseq_name": "indole-3-acetic acid 6", "gene_name": "IAA6", "gene_names_uniprotkb": "IAA6; F14G24.10; SHY1", "gene_names_refseq": "F14G24.10; F14G24_10; IAA6; SHORT HYPOCOTYL 1; SHY1; indole-3-acetic acid 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38824", "url": "https://www.uniprot.org/uniprotkb/Q38824" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38824", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38824", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PPVCSYRRKKNNEEASKAIG", "down_seq": "VKVSMDGVPYMRKIDLGSSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38824", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38824" } ], "site_lbl": "Tyr95" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "78", "end_pos": "78" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "90", "end_pos": "90" }, { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q38824-1.78.78", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q38824-1.90.90", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38831-1.68.68", "start_pos": 68, "end_pos": 68, "uniprot_canonical_ac": "Q38831-1", "length": 247, "uniprot_id": "IAA13_ARATH", "protein_name": "Auxin-responsive protein IAA13", "refseq_ac": "NP_001118434", "refseq_name": "auxin-induced protein 13", "gene_name": "IAA13", "gene_names_uniprotkb": "IAA13; F4P9.8", "gene_names_refseq": "F4P9.8; F4P9_8; IAA13; auxin-induced protein 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38831", "url": "https://www.uniprot.org/uniprotkb/Q38831" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q38831", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38831" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q38831", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38831", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKDFPSVGSKRAADSASHAG", "down_seq": "SPPRSSSQVVGWPPIGSHRM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38831", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38831" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser68" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "68", "end_pos": "68" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38882-1.563.563", "start_pos": 563, "end_pos": 563, "uniprot_canonical_ac": "Q38882-1", "length": 810, "uniprot_id": "PLDA1_ARATH", "protein_name": "Phospholipase D alpha 1", "refseq_ac": "NP_188194", "refseq_name": "phospholipase D alpha 1", "gene_name": "PLDALPHA1", "gene_names_uniprotkb": "PLDALPHA1; MSJ11.13; PLD1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDALPHA1; PLD; phospholipase D alpha 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis phospholipase Dalpha1 interacts with the heterotrimeric G-protein alpha-subunit through a motif analogous to the DRY motif in G-protein-coupled receptors.", "journal": "The Journal of biological chemistry", "date": "2004-01-16", "authors": "Zhao Jian, Wang Xuemin", "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" } ], "reference": [ { "type": "PubMed", "id": "14594812", "url": "https://glygen.org/publication/PubMed/14594812" } ] } ], "crossref": [ { "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14594812", "url": "https://glygen.org/publication/PubMed/14594812", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "ALHLIPKELSLKIVSKIEKG", "down_seq": "KFRVYVVVPMWPEGLPESGS", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Decreased GPA1 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" }, { "database": "PubMed", "id": "14594812", "url": "https://glygen.org/publication/PubMed/14594812" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "563", "end_pos": "563" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "565", "end_pos": "565" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "481", "end_pos": "481" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "801", "end_pos": "801" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q38882-1.564.564", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q38882-1.565.565", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38882-1.564.564", "start_pos": 564, "end_pos": 564, "uniprot_canonical_ac": "Q38882-1", "length": 810, "uniprot_id": "PLDA1_ARATH", "protein_name": "Phospholipase D alpha 1", "refseq_ac": "NP_188194", "refseq_name": "phospholipase D alpha 1", "gene_name": "PLDALPHA1", "gene_names_uniprotkb": "PLDALPHA1; MSJ11.13; PLD1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDALPHA1; PLD; phospholipase D alpha 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis phospholipase Dalpha1 interacts with the heterotrimeric G-protein alpha-subunit through a motif analogous to the DRY motif in G-protein-coupled receptors.", "journal": "The Journal of biological chemistry", "date": "2004-01-16", "authors": "Zhao Jian, Wang Xuemin", "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" } ], "reference": [ { "type": "PubMed", "id": "14594812", "url": "https://glygen.org/publication/PubMed/14594812" } ] } ], "crossref": [ { "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14594812", "url": "https://glygen.org/publication/PubMed/14594812", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LHLIPKELSLKIVSKIEKGE", "down_seq": "FRVYVVVPMWPEGLPESGSV", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of GPA1 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" }, { "database": "PubMed", "id": "14594812", "url": "https://glygen.org/publication/PubMed/14594812" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "563", "end_pos": "563" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "565", "end_pos": "565" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "481", "end_pos": "481" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "801", "end_pos": "801" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q38882-1.563.563", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q38882-1.565.565", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38882-1.565.565", "start_pos": 565, "end_pos": 565, "uniprot_canonical_ac": "Q38882-1", "length": 810, "uniprot_id": "PLDA1_ARATH", "protein_name": "Phospholipase D alpha 1", "refseq_ac": "NP_188194", "refseq_name": "phospholipase D alpha 1", "gene_name": "PLDALPHA1", "gene_names_uniprotkb": "PLDALPHA1; MSJ11.13; PLD1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDALPHA1; PLD; phospholipase D alpha 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis phospholipase Dalpha1 interacts with the heterotrimeric G-protein alpha-subunit through a motif analogous to the DRY motif in G-protein-coupled receptors.", "journal": "The Journal of biological chemistry", "date": "2004-01-16", "authors": "Zhao Jian, Wang Xuemin", "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" } ], "reference": [ { "type": "PubMed", "id": "14594812", "url": "https://glygen.org/publication/PubMed/14594812" } ] } ], "crossref": [ { "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "14594812", "url": "https://glygen.org/publication/PubMed/14594812", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "HLIPKELSLKIVSKIEKGEK", "down_seq": "RVYVVVPMWPEGLPESGSVQ", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Decreased GPA1 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" }, { "database": "PubMed", "id": "14594812", "url": "https://glygen.org/publication/PubMed/14594812" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "563", "end_pos": "563" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "565", "end_pos": "565" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "481", "end_pos": "481" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "801", "end_pos": "801" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q38882-1.563.563", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q38882-1.564.564", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38882-1.481.481", "start_pos": 481, "end_pos": 481, "uniprot_canonical_ac": "Q38882-1", "length": 810, "uniprot_id": "PLDA1_ARATH", "protein_name": "Phospholipase D alpha 1", "refseq_ac": "NP_188194", "refseq_name": "phospholipase D alpha 1", "gene_name": "PLDALPHA1", "gene_names_uniprotkb": "PLDALPHA1; MSJ11.13; PLD1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDALPHA1; PLD; phospholipase D alpha 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VWNVQLFRSIDGGAAAGFPE", "down_seq": "PEAAAEAGLVSGKDNIIDRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser481" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "563", "end_pos": "563" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "565", "end_pos": "565" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "481", "end_pos": "481" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "801", "end_pos": "801" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38882-1.594.594", "start_pos": 594, "end_pos": 594, "uniprot_canonical_ac": "Q38882-1", "length": 810, "uniprot_id": "PLDA1_ARATH", "protein_name": "Phospholipase D alpha 1", "refseq_ac": "NP_188194", "refseq_name": "phospholipase D alpha 1", "gene_name": "PLDALPHA1", "gene_names_uniprotkb": "PLDALPHA1; MSJ11.13; PLD1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDALPHA1; PLD; phospholipase D alpha 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WPEGLPESGSVQAILDWQRR", "down_seq": "MEMMYKDVIQALRAQGLEED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882" } ], "site_lbl": "Thr594" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "563", "end_pos": "563" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "565", "end_pos": "565" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "481", "end_pos": "481" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "801", "end_pos": "801" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38882-1.776.776", "start_pos": 776, "end_pos": 776, "uniprot_canonical_ac": "Q38882-1", "length": 810, "uniprot_id": "PLDA1_ARATH", "protein_name": "Phospholipase D alpha 1", "refseq_ac": "NP_188194", "refseq_name": "phospholipase D alpha 1", "gene_name": "PLDALPHA1", "gene_names_uniprotkb": "PLDALPHA1; MSJ11.13; PLD1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDALPHA1; PLD; phospholipase D alpha 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SESLEHDLPGHLLRYPIGVA", "down_seq": "EGDITELPGFEFFPDTKARI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser776" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "563", "end_pos": "563" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "565", "end_pos": "565" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "481", "end_pos": "481" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "801", "end_pos": "801" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38882-1.801.801", "start_pos": 801, "end_pos": 801, "uniprot_canonical_ac": "Q38882-1", "length": 810, "uniprot_id": "PLDA1_ARATH", "protein_name": "Phospholipase D alpha 1", "refseq_ac": "NP_188194", "refseq_name": "phospholipase D alpha 1", "gene_name": "PLDALPHA1", "gene_names_uniprotkb": "PLDALPHA1; MSJ11.13; PLD1", "gene_names_refseq": "PHOSPHOLIPASE D; PLDALPHA1; PLD; phospholipase D alpha 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38882", "url": "https://www.uniprot.org/uniprotkb/Q38882" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Sucrose-induced receptor kinase SIRK1 regulates a plasma membrane aquaporin in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-10", "authors": "Wu Xu Na, Sanchez Rodriguez Clara, Pertl-Obermeyer Heidi, Obermeyer Gerhard, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882" } ], "reference": [ { "type": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ] } ], "crossref": [ { "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TELPGFEFFPDTKARILGTK", "down_seq": "DYLPPILTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38882", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38882" }, { "database": "PubMed", "id": "23820729", "url": "https://glygen.org/publication/PubMed/23820729" } ], "site_lbl": "Ser801" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "563", "end_pos": "563" }, { "start_pos": "564", "end_pos": "564" }, { "start_pos": "565", "end_pos": "565" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "481", "end_pos": "481" }, { "start_pos": "594", "end_pos": "594" }, { "start_pos": "776", "end_pos": "776" }, { "start_pos": "801", "end_pos": "801" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.133.133", "start_pos": 133, "end_pos": 133, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Redox state-dependent modulation of plant SnRK1 kinase activity differs from AMPK regulation in animals.", "journal": "FEBS letters", "date": "2017-11", "authors": "Wurzinger Bernhard, Mair Andrea, Fischer-Schrader Katrin, Nukarinen Ella, Roustan Valentin, Weckwerth Wolfram, Teige Markus", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "reference": [ { "type": "PubMed", "id": "28940407", "url": "https://glygen.org/publication/PubMed/28940407" } ] } ], "crossref": [ { "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28940407", "url": "https://glygen.org/publication/PubMed/28940407", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "RLQEDEARNFFQQIISGVEY", "down_seq": "HRNMVVHRDLKPENLLLDSK", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Reduced kinase activity and retained redox sensitivity.", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "PubMed", "id": "28940407", "url": "https://glygen.org/publication/PubMed/28940407" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.175.175", "start_pos": 175, "end_pos": 175, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis protein kinases GRIK1 and GRIK2 specifically activate SnRK1 by phosphorylating its activation loop.", "journal": "Plant physiology", "date": "2009-06", "authors": "Shen Wei, Reyes Maria Ines, Hanley-Bowdoin Linda", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "19339507", "url": "https://glygen.org/publication/PubMed/19339507" } ] }, { "title": "Cross-phosphorylation between Arabidopsis thaliana sucrose nonfermenting 1-related protein kinase 1 (AtSnRK1) and its activating kinase (AtSnAK) determines their catalytic activities.", "journal": "The Journal of biological chemistry", "date": "2010-04-16", "authors": "Crozet Pierre, Jammes Fabien, Valot Benoit, Ambard-Bretteville Fran\u00e7oise, Nessler Sylvie, Hodges Michael, Vidal Jean, Thomas Martine", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "reference": [ { "type": "PubMed", "id": "20164192", "url": "https://glygen.org/publication/PubMed/20164192" } ] }, { "title": "A central integrator of transcription networks in plant stress and energy signalling.", "journal": "Nature", "date": "2007-08-23", "authors": "Baena-Gonz\u00e1lez Elena, Rolland Filip, Thevelein Johan M, Sheen Jen", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "reference": [ { "type": "PubMed", "id": "17671505", "url": "https://glygen.org/publication/PubMed/17671505" } ] }, { "title": "Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence.", "journal": "Journal of experimental botany", "date": "2016-04", "authors": "Cho Hsing-Yi, Wen Tuan-Nan, Wang Ying-Tsui, Shih Ming-Che", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "27029354", "url": "https://glygen.org/publication/PubMed/27029354" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] }, { "title": "KIN10 promotes stomatal development through stabilization of the SPEECHLESS transcription factor.", "journal": "Nature communications", "date": "2020-08-25", "authors": "Han Chao, Liu Yue, Shi Wen, Qiao Yan, Wang Lingyan, Tian Yanchen, Fan Min, Deng Zhiping, Lau On Sun, De Jaeger Geert, Bai Ming-Yi", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "32843632", "url": "https://glygen.org/publication/PubMed/32843632" } ] }, { "title": "ABI1 and PP2CA phosphatases are negative regulators of Snf1-related protein kinase1 signaling in Arabidopsis.", "journal": "The Plant cell", "date": "2013-10", "authors": "Rodrigues Am\u00e9rico, Adamo Mattia, Crozet Pierre, Margalha Leonor, Confraria Ana, Martinho Cl\u00e1udia, Elias Alexandre, Rabissi Agnese, Lumbreras Victoria, Gonz\u00e1lez-Guzm\u00e1n Miguel, Antoni Regina, Rodriguez Pedro L, Baena-Gonz\u00e1lez Elena", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "24179127", "url": "https://glygen.org/publication/PubMed/24179127" } ] }, { "title": "Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation.", "journal": "Scientific reports", "date": "2016-08-22", "authors": "Nukarinen Ella, N\u00e4gele Thomas, Pedrotti Lorenzo, Wurzinger Bernhard, Mair Andrea, Landgraf Ramona, B\u00f6rnke Frederik, Hanson Johannes, Teige Markus, Baena-Gonzalez Elena, Dr\u00f6ge-Laser Wolfgang, Weckwerth Wolfram", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "27545962", "url": "https://glygen.org/publication/PubMed/27545962" } ] }, { "title": "SnRK1 (SNF1-related kinase 1) has a central role in sugar and ABA signalling in Arabidopsis thaliana.", "journal": "The Plant journal : for cell and molecular biology", "date": "2009-07", "authors": "Jossier Mathieu, Bouly Jean-Pierre, Meimoun Patrice, Arjmand Alaleh, Lessard Philippe, Hawley Simon, Grahame Hardie D, Thomas Martine", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "19302419", "url": "https://glygen.org/publication/PubMed/19302419" } ] } ], "crossref": [ { "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19339507", "url": "https://glygen.org/publication/PubMed/19339507", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20164192", "url": "https://glygen.org/publication/PubMed/20164192", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17671505", "url": "https://glygen.org/publication/PubMed/17671505", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27029354", "url": "https://glygen.org/publication/PubMed/27029354", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] }, { "id": "32843632", "url": "https://glygen.org/publication/PubMed/32843632", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24179127", "url": "https://glygen.org/publication/PubMed/24179127", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27545962", "url": "https://glygen.org/publication/PubMed/27545962", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19302419", "url": "https://glygen.org/publication/PubMed/19302419", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NVKIADFGLSNIMRDGHFLK", "down_seq": "SCGSPNYAAPEVISGKLYAG", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes phosphorylation by GRIK1 or GRIK2 leading to inactivation of the protein. Enhances sensitivity to submergence.", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "PubMed", "id": "19339507", "url": "https://glygen.org/publication/PubMed/19339507" }, { "database": "PubMed", "id": "20164192", "url": "https://glygen.org/publication/PubMed/20164192" }, { "database": "PubMed", "id": "17671505", "url": "https://glygen.org/publication/PubMed/17671505" }, { "database": "PubMed", "id": "27029354", "url": "https://glygen.org/publication/PubMed/27029354" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Enhances tolerance to submergence.", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "PubMed", "id": "27029354", "url": "https://glygen.org/publication/PubMed/27029354" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by GRIK1 or GRIK2", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "PubMed", "id": "32843632", "url": "https://glygen.org/publication/PubMed/32843632" }, { "database": "PubMed", "id": "19339507", "url": "https://glygen.org/publication/PubMed/19339507" }, { "database": "PubMed", "id": "24179127", "url": "https://glygen.org/publication/PubMed/24179127" }, { "database": "PubMed", "id": "27029354", "url": "https://glygen.org/publication/PubMed/27029354" }, { "database": "PubMed", "id": "27545962", "url": "https://glygen.org/publication/PubMed/27545962" }, { "database": "PubMed", "id": "19302419", "url": "https://glygen.org/publication/PubMed/19302419" } ], "site_lbl": "Thr175" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q38997-2.164.164", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q38997-2.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q38997-2.177.177", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q38997-2.179.179", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Redox state-dependent modulation of plant SnRK1 kinase activity differs from AMPK regulation in animals.", "journal": "FEBS letters", "date": "2017-11", "authors": "Wurzinger Bernhard, Mair Andrea, Fischer-Schrader Katrin, Nukarinen Ella, Roustan Valentin, Weckwerth Wolfram, Teige Markus", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "reference": [ { "type": "PubMed", "id": "28940407", "url": "https://glygen.org/publication/PubMed/28940407" } ] } ], "crossref": [ { "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28940407", "url": "https://glygen.org/publication/PubMed/28940407", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "KIADFGLSNIMRDGHFLKTS", "down_seq": "GSPNYAAPEVISGKLYAGPE", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Retained kinase activity and abolished redox sensitivity.", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "PubMed", "id": "28940407", "url": "https://glygen.org/publication/PubMed/28940407" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q38997-2.164.164", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q38997-2.175.175", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q38997-2.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q38997-2.179.179", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "SUMOylation represses SnRK1 signaling in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-01", "authors": "Crozet Pierre, Margalha Leonor, Butowt Rafal, Fernandes No\u00e9mia, Elias Carlos A, Orosa Beatriz, Tomanov Konstantin, Teige Markus, Bachmair Andreas, Sadanandom Ari, Baena-Gonz\u00e1lez Elena", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "reference": [ { "type": "PubMed", "id": "26662259", "url": "https://glygen.org/publication/PubMed/26662259" } ] } ], "crossref": [ { "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26662259", "url": "https://glygen.org/publication/PubMed/26662259", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "SILPNYKLGRTLGIGSFGRV", "down_seq": "IAEHALTGHKVAIKILNRRK", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes sumoylation. When associated with R-63 and R-390.", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "PubMed", "id": "26662259", "url": "https://glygen.org/publication/PubMed/26662259" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q38997-2.48.48", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.390.390", "start_pos": 390, "end_pos": 390, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "SUMOylation represses SnRK1 signaling in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-01", "authors": "Crozet Pierre, Margalha Leonor, Butowt Rafal, Fernandes No\u00e9mia, Elias Carlos A, Orosa Beatriz, Tomanov Konstantin, Teige Markus, Bachmair Andreas, Sadanandom Ari, Baena-Gonz\u00e1lez Elena", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "reference": [ { "type": "PubMed", "id": "26662259", "url": "https://glygen.org/publication/PubMed/26662259" } ] } ], "crossref": [ { "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26662259", "url": "https://glygen.org/publication/PubMed/26662259", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LPGLMEYQGVGLRSQYPVER", "down_seq": "WALGLQSRAHPREIMTEVLK", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes sumoylation. When associated with R-34 and R-63.", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "PubMed", "id": "26662259", "url": "https://glygen.org/publication/PubMed/26662259" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence.", "journal": "Journal of experimental botany", "date": "2016-04", "authors": "Cho Hsing-Yi, Wen Tuan-Nan, Wang Ying-Tsui, Shih Ming-Che", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "27029354", "url": "https://glygen.org/publication/PubMed/27029354" } ] }, { "title": "A central integrator of transcription networks in plant stress and energy signalling.", "journal": "Nature", "date": "2007-08-23", "authors": "Baena-Gonz\u00e1lez Elena, Rolland Filip, Thevelein Johan M, Sheen Jen", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "reference": [ { "type": "PubMed", "id": "17671505", "url": "https://glygen.org/publication/PubMed/17671505" } ] } ], "crossref": [ { "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27029354", "url": "https://glygen.org/publication/PubMed/27029354", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17671505", "url": "https://glygen.org/publication/PubMed/17671505", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "GSFGRVKIAEHALTGHKVAI", "down_seq": "ILNRRKIKNMEMEEKVRREI", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "M", "comment": "Abolishes kinase activity. Enhances sensitivity to submergence.", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "PubMed", "id": "27029354", "url": "https://glygen.org/publication/PubMed/27029354" }, { "database": "PubMed", "id": "17671505", "url": "https://glygen.org/publication/PubMed/17671505" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q38997-2.34.34", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q38997-2.63.63", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.63.63", "start_pos": 63, "end_pos": 63, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "SUMOylation represses SnRK1 signaling in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-01", "authors": "Crozet Pierre, Margalha Leonor, Butowt Rafal, Fernandes No\u00e9mia, Elias Carlos A, Orosa Beatriz, Tomanov Konstantin, Teige Markus, Bachmair Andreas, Sadanandom Ari, Baena-Gonz\u00e1lez Elena", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "reference": [ { "type": "PubMed", "id": "26662259", "url": "https://glygen.org/publication/PubMed/26662259" } ] } ], "crossref": [ { "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26662259", "url": "https://glygen.org/publication/PubMed/26662259", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "HKVAIKILNRRKIKNMEMEE", "down_seq": "VRREIKILRLFMHPHIIRLY", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "R", "comment": "Abolishes sumoylation. When associated with R-34 and R-390.", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "PubMed", "id": "26662259", "url": "https://glygen.org/publication/PubMed/26662259" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q38997-2.48.48", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.164.164", "start_pos": 164, "end_pos": 164, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KPENLLLDSKCNVKIADFGL", "down_seq": "NIMRDGHFLKTSCGSPNYAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "site_lbl": "Ser164" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q38997-2.175.175", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q38997-2.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q38997-2.177.177", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q38997-2.179.179", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q38997-2.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VKIADFGLSNIMRDGHFLKT", "down_seq": "CGSPNYAAPEVISGKLYAGP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser176" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q38997-2.164.164", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q38997-2.175.175", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q38997-2.177.177", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q38997-2.179.179", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.179.179", "start_pos": 179, "end_pos": 179, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ADFGLSNIMRDGHFLKTSCG", "down_seq": "PNYAAPEVISGKLYAGPEVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser179" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q38997-2.164.164", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q38997-2.175.175", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q38997-2.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q38997-2.177.177", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.361.361", "start_pos": 361, "end_pos": 361, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YLGAEFQETMEGTPRMHPAE", "down_seq": "VASPVSHRLPGLMEYQGVGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser361" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q38997-2.364.364", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q38997-2.364.364", "start_pos": 364, "end_pos": 364, "uniprot_canonical_ac": "Q38997-2", "length": 512, "uniprot_id": "KIN10_ARATH", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN10", "refseq_ac": "NP_001118546", "refseq_name": "SNF1 kinase homolog 10", "gene_name": "KIN10", "gene_names_uniprotkb": "KIN10; AK21; AKIN10; SKIN10; SNR2; SNRK1.1; T4P13.22", "gene_names_refseq": "AKIN10; KIN10; SNF1 kinase homolog 10; SNF1-RELATED PROTEIN KINASE 1.1; SNF1-RELATED PROTEIN KINASE; SNRK1.1; T4P13.22; T4P13_22", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Changes in the Phosphoproteome and Metabolome Link Early Signaling Events to Rearrangement of Photosynthesis and Central Metabolism in Salinity and Oxidative Stress Response in Arabidopsis.", "journal": "Plant physiology", "date": "2015-12", "authors": "Chen Yanmei, Hoehenwarter Wolfgang", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "26471895", "url": "https://glygen.org/publication/PubMed/26471895" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "26471895", "url": "https://glygen.org/publication/PubMed/26471895", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AEFQETMEGTPRMHPAESVA", "down_seq": "PVSHRLPGLMEYQGVGLRSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q38997", "url": "https://www.uniprot.org/uniprotkb/Q38997" }, { "database": "PubMed", "id": "26471895", "url": "https://glygen.org/publication/PubMed/26471895" }, { "database": "iPTMnet", "id": "Q38997", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q38997" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser364" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "34", "end_pos": "34" }, { "start_pos": "390", "end_pos": "390" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "63", "end_pos": "63" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "164", "end_pos": "164" }, { "start_pos": "175", "end_pos": "175" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "364", "end_pos": "364" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q38997-2.361.361", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39016-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "Q39016-1", "length": 495, "uniprot_id": "CDPKB_ARATH", "protein_name": "Calcium-dependent protein kinase 11", "refseq_ac": "NP_174807", "refseq_name": "calcium-dependent protein kinase 2", "gene_name": "CPK11", "gene_names_uniprotkb": "CPK11; CDPK2; F15O4.8", "gene_names_refseq": "ATCDPK2; ATCPK11; CALCIUM-DEPENDENT PROTEIN KINASE 2; CDPK2; CPK11; F15O4.8; calcium-dependent protein kinase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A novel yeast two-hybrid approach to identify CDPK substrates: characterization of the interaction between AtCPK11 and AtDi19, a nuclear zinc finger protein.", "journal": "FEBS letters", "date": "2006-02-06", "authors": "Rodriguez Milla Miguel A, Uno Yuichi, Chang Ing-Feng, Townsend Jared, Maher Eileen A, Quilici David, Cushman John C", "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "reference": [ { "type": "PubMed", "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971" } ] } ], "crossref": [ { "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "LIKTILGVVEACHSLGVMHR", "down_seq": "LKPENFLFDSPKDDAKLKAT", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" }, { "database": "PubMed", "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39016-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "Q39016-1", "length": 495, "uniprot_id": "CDPKB_ARATH", "protein_name": "Calcium-dependent protein kinase 11", "refseq_ac": "NP_174807", "refseq_name": "calcium-dependent protein kinase 2", "gene_name": "CPK11", "gene_names_uniprotkb": "CPK11; CDPK2; F15O4.8", "gene_names_refseq": "ATCDPK2; ATCPK11; CALCIUM-DEPENDENT PROTEIN KINASE 2; CDPK2; CPK11; F15O4.8; calcium-dependent protein kinase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A novel yeast two-hybrid approach to identify CDPK substrates: characterization of the interaction between AtCPK11 and AtDi19, a nuclear zinc finger protein.", "journal": "FEBS letters", "date": "2006-02-06", "authors": "Rodriguez Milla Miguel A, Uno Yuichi, Chang Ing-Feng, Townsend Jared, Maher Eileen A, Quilici David, Cushman John C", "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "reference": [ { "type": "PubMed", "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971" } ] } ], "crossref": [ { "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "LKPENFLFDSPKDDAKLKAT", "down_seq": "FGLSVFYKPGQYLYDVVGSP", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" }, { "database": "PubMed", "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q39016-1.190.190", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39016-1.306.306", "start_pos": 306, "end_pos": 306, "uniprot_canonical_ac": "Q39016-1", "length": 495, "uniprot_id": "CDPKB_ARATH", "protein_name": "Calcium-dependent protein kinase 11", "refseq_ac": "NP_174807", "refseq_name": "calcium-dependent protein kinase 2", "gene_name": "CPK11", "gene_names_uniprotkb": "CPK11; CDPK2; F15O4.8", "gene_names_refseq": "ATCDPK2; ATCPK11; CALCIUM-DEPENDENT PROTEIN KINASE 2; CDPK2; CPK11; F15O4.8; calcium-dependent protein kinase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A novel yeast two-hybrid approach to identify CDPK substrates: characterization of the interaction between AtCPK11 and AtDi19, a nuclear zinc finger protein.", "journal": "FEBS letters", "date": "2006-02-06", "authors": "Rodriguez Milla Miguel A, Uno Yuichi, Chang Ing-Feng, Townsend Jared, Maher Eileen A, Quilici David, Cushman John C", "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "reference": [ { "type": "PubMed", "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971" } ] } ], "crossref": [ { "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "DEQAAPDKPLDPAVLSRLKQ", "down_seq": "SQMNKIKKMALRVIAERLSE", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Constitutive activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" }, { "database": "PubMed", "id": "16438971", "url": "https://glygen.org/publication/PubMed/16438971" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39016-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "Q39016-1", "length": 495, "uniprot_id": "CDPKB_ARATH", "protein_name": "Calcium-dependent protein kinase 11", "refseq_ac": "NP_174807", "refseq_name": "calcium-dependent protein kinase 2", "gene_name": "CPK11", "gene_names_uniprotkb": "CPK11; CDPK2; F15O4.8", "gene_names_refseq": "ATCDPK2; ATCPK11; CALCIUM-DEPENDENT PROTEIN KINASE 2; CDPK2; CPK11; F15O4.8; calcium-dependent protein kinase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] } ], "crossref": [ { "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "METKPNPRRP", "down_seq": "NTVLPYQTPRLRDHYLLGKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39016-1.190.190", "start_pos": 190, "end_pos": 190, "uniprot_canonical_ac": "Q39016-1", "length": 495, "uniprot_id": "CDPKB_ARATH", "protein_name": "Calcium-dependent protein kinase 11", "refseq_ac": "NP_174807", "refseq_name": "calcium-dependent protein kinase 2", "gene_name": "CPK11", "gene_names_uniprotkb": "CPK11; CDPK2; F15O4.8", "gene_names_refseq": "ATCDPK2; ATCPK11; CALCIUM-DEPENDENT PROTEIN KINASE 2; CDPK2; CPK11; F15O4.8; calcium-dependent protein kinase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TDFGLSVFYKPGQYLYDVVG", "down_seq": "PYYVAPEVLKKCYGPEIDVW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "site_lbl": "Ser190" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q39016-1.171.171", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q39016-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q39016-1", "length": 495, "uniprot_id": "CDPKB_ARATH", "protein_name": "Calcium-dependent protein kinase 11", "refseq_ac": "NP_174807", "refseq_name": "calcium-dependent protein kinase 2", "gene_name": "CPK11", "gene_names_uniprotkb": "CPK11; CDPK2; F15O4.8", "gene_names_refseq": "ATCDPK2; ATCPK11; CALCIUM-DEPENDENT PROTEIN KINASE 2; CDPK2; CPK11; F15O4.8; calcium-dependent protein kinase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] } ], "crossref": [ { "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WSAGVILYILLSGVPPFWAE", "down_seq": "ESGIFRQILQGKLDFKSDPW", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ], "site_lbl": "Thr230" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q39016-1.232.232", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39016-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "Q39016-1", "length": 495, "uniprot_id": "CDPKB_ARATH", "protein_name": "Calcium-dependent protein kinase 11", "refseq_ac": "NP_174807", "refseq_name": "calcium-dependent protein kinase 2", "gene_name": "CPK11", "gene_names_uniprotkb": "CPK11; CDPK2; F15O4.8", "gene_names_refseq": "ATCDPK2; ATCPK11; CALCIUM-DEPENDENT PROTEIN KINASE 2; CDPK2; CPK11; F15O4.8; calcium-dependent protein kinase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "The Plant cell", "date": "2004-09", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] } ], "crossref": [ { "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGVILYILLSGVPPFWAETE", "down_seq": "GIFRQILQGKLDFKSDPWPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ], "site_lbl": "Ser232" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q39016-1.230.230", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39016-1.361.361", "start_pos": 361, "end_pos": 361, "uniprot_canonical_ac": "Q39016-1", "length": 495, "uniprot_id": "CDPKB_ARATH", "protein_name": "Calcium-dependent protein kinase 11", "refseq_ac": "NP_174807", "refseq_name": "calcium-dependent protein kinase 2", "gene_name": "CPK11", "gene_names_uniprotkb": "CPK11; CDPK2; F15O4.8", "gene_names_refseq": "ATCDPK2; ATCPK11; CALCIUM-DEPENDENT PROTEIN KINASE 2; CDPK2; CPK11; F15O4.8; calcium-dependent protein kinase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TDNSGTITFEELKAGLKRVG", "down_seq": "ELMESEIKSLMDAADIDNSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser361" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39016-1.493.493", "start_pos": 493, "end_pos": 493, "uniprot_canonical_ac": "Q39016-1", "length": 495, "uniprot_id": "CDPKB_ARATH", "protein_name": "Calcium-dependent protein kinase 11", "refseq_ac": "NP_174807", "refseq_name": "calcium-dependent protein kinase 2", "gene_name": "CPK11", "gene_names_uniprotkb": "CPK11; CDPK2; F15O4.8", "gene_names_refseq": "ATCDPK2; ATCPK11; CALCIUM-DEPENDENT PROTEIN KINASE 2; CDPK2; CPK11; F15O4.8; calcium-dependent protein kinase 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39016", "url": "https://www.uniprot.org/uniprotkb/Q39016" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TMMKNLNFNIADAFGVDGEK", "down_seq": "DD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39016", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39016" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser493" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "150", "end_pos": "150" }, { "start_pos": "171", "end_pos": "171" }, { "start_pos": "306", "end_pos": "306" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" }, { "start_pos": "190", "end_pos": "190" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "361", "end_pos": "361" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39024-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "Q39024-1", "length": 376, "uniprot_id": "MPK4_ARATH", "protein_name": "Mitogen-activated protein kinase 4", "refseq_ac": "NP_192046", "refseq_name": "MAP kinase 4", "gene_name": "MPK4", "gene_names_uniprotkb": "MPK4; F2N1.1; F2N1_2-t", "gene_names_refseq": "ATMPK4; F2N1.1; F2N1_1; MAP kinase 4; MAPK4; MPK4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ATMPK4, an Arabidopsis homolog of mitogen-activated protein kinase, is activated in vitro by AtMEK1 through threonine phosphorylation.", "journal": "Plant physiology", "date": "2000-04", "authors": "Huang Y, Li H, Gupta R, Morris P C, Luan S, Kieber J J", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "reference": [ { "type": "PubMed", "id": "10759527", "url": "https://glygen.org/publication/PubMed/10759527" } ] } ], "crossref": [ { "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10759527", "url": "https://glygen.org/publication/PubMed/10759527", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "HRDLKPSNLLLNANCDLKLG", "down_seq": "FGLARTKSETDFMTEYVVTR", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" }, { "database": "PubMed", "id": "10759527", "url": "https://glygen.org/publication/PubMed/10759527" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "206", "end_pos": "206" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q39024-1.195.195", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q39024-1.197.197", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q39024-1.201.201", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q39024-1.203.203", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q39024-1.206.206", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39024-1.201.201", "start_pos": 201, "end_pos": 201, "uniprot_canonical_ac": "Q39024-1", "length": 376, "uniprot_id": "MPK4_ARATH", "protein_name": "Mitogen-activated protein kinase 4", "refseq_ac": "NP_192046", "refseq_name": "MAP kinase 4", "gene_name": "MPK4", "gene_names_uniprotkb": "MPK4; F2N1.1; F2N1_2-t", "gene_names_refseq": "ATMPK4; F2N1.1; F2N1_1; MAP kinase 4; MAPK4; MPK4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis map kinase 4 negatively regulates systemic acquired resistance.", "journal": "Cell", "date": "2000-12-22", "authors": "Petersen M, Brodersen P, Naested H, Andreasson E, Lindhart U, Johansen B, Nielsen H B, Lacy M, Austin M J, Parker J E, Sharma S B, Klessig D F, Martienssen R, Mattsson O, Jensen A B, Mundy J", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "reference": [ { "type": "PubMed", "id": "11163186", "url": "https://glygen.org/publication/PubMed/11163186" } ] }, { "title": "Various abiotic stresses rapidly activate Arabidopsis MAP kinases ATMPK4 and ATMPK6.", "journal": "The Plant journal : for cell and molecular biology", "date": "2000-12", "authors": "Ichimura K, Mizoguchi T, Yoshida R, Yuasa T, Shinozaki K", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" }, { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "11123804", "url": "https://glygen.org/publication/PubMed/11123804" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11163186", "url": "https://glygen.org/publication/PubMed/11163186", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11123804", "url": "https://glygen.org/publication/PubMed/11123804", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CDLKLGDFGLARTKSETDFM", "down_seq": "EYVVTRWYRAPELLLNCSEY", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of kinase activity; when associated with Y-203.", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" }, { "database": "PubMed", "id": "11163186", "url": "https://glygen.org/publication/PubMed/11163186" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" }, { "database": "PubMed", "id": "11123804", "url": "https://glygen.org/publication/PubMed/11123804" }, { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr201" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "206", "end_pos": "206" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q39024-1.187.187", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q39024-1.195.195", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q39024-1.197.197", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39024-1.203.203", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39024-1.206.206", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39024-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "Q39024-1", "length": 376, "uniprot_id": "MPK4_ARATH", "protein_name": "Mitogen-activated protein kinase 4", "refseq_ac": "NP_192046", "refseq_name": "MAP kinase 4", "gene_name": "MPK4", "gene_names_uniprotkb": "MPK4; F2N1.1; F2N1_2-t", "gene_names_refseq": "ATMPK4; F2N1.1; F2N1_1; MAP kinase 4; MAPK4; MPK4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis map kinase 4 negatively regulates systemic acquired resistance.", "journal": "Cell", "date": "2000-12-22", "authors": "Petersen M, Brodersen P, Naested H, Andreasson E, Lindhart U, Johansen B, Nielsen H B, Lacy M, Austin M J, Parker J E, Sharma S B, Klessig D F, Martienssen R, Mattsson O, Jensen A B, Mundy J", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "reference": [ { "type": "PubMed", "id": "11163186", "url": "https://glygen.org/publication/PubMed/11163186" } ] }, { "title": "Various abiotic stresses rapidly activate Arabidopsis MAP kinases ATMPK4 and ATMPK6.", "journal": "The Plant journal : for cell and molecular biology", "date": "2000-12", "authors": "Ichimura K, Mizoguchi T, Yoshida R, Yuasa T, Shinozaki K", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" }, { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "11123804", "url": "https://glygen.org/publication/PubMed/11123804" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11163186", "url": "https://glygen.org/publication/PubMed/11163186", "database": "PubMed", "categories": [ "Other" ] }, { "id": "11123804", "url": "https://glygen.org/publication/PubMed/11123804", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LKLGDFGLARTKSETDFMTE", "down_seq": "VVTRWYRAPELLLNCSEYTA", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of kinase activity; when associated with T-201.", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" }, { "database": "PubMed", "id": "11163186", "url": "https://glygen.org/publication/PubMed/11163186" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" }, { "database": "PubMed", "id": "11123804", "url": "https://glygen.org/publication/PubMed/11123804" }, { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Tyr203" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "206", "end_pos": "206" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q39024-1.187.187", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q39024-1.195.195", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q39024-1.197.197", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39024-1.201.201", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39024-1.206.206", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39024-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "Q39024-1", "length": 376, "uniprot_id": "MPK4_ARATH", "protein_name": "Mitogen-activated protein kinase 4", "refseq_ac": "NP_192046", "refseq_name": "MAP kinase 4", "gene_name": "MPK4", "gene_names_uniprotkb": "MPK4; F2N1.1; F2N1_2-t", "gene_names_refseq": "ATMPK4; F2N1.1; F2N1_1; MAP kinase 4; MAPK4; MPK4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Natural Variation in Arabidopsis Cvi-0 Accession Reveals an Important Role of MPK12 in Guard Cell CO2 Signaling.", "journal": "PLoS biology", "date": "2016-12", "authors": "Jakobson Liina, Vaahtera Lauri, T\u00f5ldsepp Kadri, Nuhkat Maris, Wang Cun, Wang Yuh-Shuh, H\u00f5rak Hanna, Valk Ervin, Pechter Priit, Sindarovska Yana, Tang Jing, Xiao Chuanlei, Xu Yang, Gerst Talas Ulvi, Garc\u00eda-Sosa Alfonso T, Kangasj\u00e4rvi Saijaliisa, Maran Uko, Remm Maido, Roelfsema M Rob G, Hu Honghong, Kangasj\u00e4rvi Jaakko, Loog Mart, Schroeder Julian I, Kollist Hannes, Brosch\u00e9 Mikael", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "reference": [ { "type": "PubMed", "id": "27923039", "url": "https://glygen.org/publication/PubMed/27923039" } ] } ], "crossref": [ { "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27923039", "url": "https://glygen.org/publication/PubMed/27923039", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "LFEVSRKYVPPLRPIGRGAY", "down_seq": "IVCAATNSETGEEVAIKKIG", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "R", "comment": "Altered inhibition of HT1 activity.", "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" }, { "database": "PubMed", "id": "27923039", "url": "https://glygen.org/publication/PubMed/27923039" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "206", "end_pos": "206" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39024-1.195.195", "start_pos": 195, "end_pos": 195, "uniprot_canonical_ac": "Q39024-1", "length": 376, "uniprot_id": "MPK4_ARATH", "protein_name": "Mitogen-activated protein kinase 4", "refseq_ac": "NP_192046", "refseq_name": "MAP kinase 4", "gene_name": "MPK4", "gene_names_uniprotkb": "MPK4; F2N1.1; F2N1_2-t", "gene_names_refseq": "ATMPK4; F2N1.1; F2N1_1; MAP kinase 4; MAPK4; MPK4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLLNANCDLKLGDFGLARTK", "down_seq": "ETDFMTEYVVTRWYRAPELL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser195" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "206", "end_pos": "206" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q39024-1.187.187", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q39024-1.197.197", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q39024-1.201.201", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q39024-1.203.203", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q39024-1.206.206", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39024-1.197.197", "start_pos": 197, "end_pos": 197, "uniprot_canonical_ac": "Q39024-1", "length": 376, "uniprot_id": "MPK4_ARATH", "protein_name": "Mitogen-activated protein kinase 4", "refseq_ac": "NP_192046", "refseq_name": "MAP kinase 4", "gene_name": "MPK4", "gene_names_uniprotkb": "MPK4; F2N1.1; F2N1_2-t", "gene_names_refseq": "ATMPK4; F2N1.1; F2N1_1; MAP kinase 4; MAPK4; MPK4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LNANCDLKLGDFGLARTKSE", "down_seq": "DFMTEYVVTRWYRAPELLLN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr197" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "206", "end_pos": "206" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q39024-1.187.187", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q39024-1.195.195", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39024-1.201.201", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q39024-1.203.203", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q39024-1.206.206", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39024-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "Q39024-1", "length": 376, "uniprot_id": "MPK4_ARATH", "protein_name": "Mitogen-activated protein kinase 4", "refseq_ac": "NP_192046", "refseq_name": "MAP kinase 4", "gene_name": "MPK4", "gene_names_uniprotkb": "MPK4; F2N1.1; F2N1_2-t", "gene_names_refseq": "ATMPK4; F2N1.1; F2N1_1; MAP kinase 4; MAPK4; MPK4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39024", "url": "https://www.uniprot.org/uniprotkb/Q39024" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GDFGLARTKSETDFMTEYVV", "down_seq": "RWYRAPELLLNCSEYTAAID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39024", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39024" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Thr206" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "187", "end_pos": "187" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "55", "end_pos": "55" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "195", "end_pos": "195" }, { "start_pos": "197", "end_pos": "197" }, { "start_pos": "201", "end_pos": "201" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "206", "end_pos": "206" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q39024-1.187.187", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q39024-1.195.195", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q39024-1.197.197", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39024-1.201.201", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39024-1.203.203", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39101-1.84.84", "start_pos": 84, "end_pos": 84, "uniprot_canonical_ac": "Q39101-1", "length": 255, "uniprot_id": "FRI1_ARATH", "protein_name": "Ferritin-1, chloroplastic", "refseq_ac": "NP_195780", "refseq_name": "ferretin 1", "gene_name": "FER1", "gene_names_uniprotkb": "FER1; F7A7.120", "gene_names_refseq": "ARABIDOPSIS THALIANA FERRETIN 1; ATFER1; FER1; ferretin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39101", "url": "https://www.uniprot.org/uniprotkb/Q39101" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q39101", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39101" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q39101", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39101", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FQPFEEVKKADLAIPITSHA", "down_seq": "LARQRFADASEAVINEQINV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39101", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39101" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser84" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "84", "end_pos": "84" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39160-1.1052.1052", "start_pos": 1052, "end_pos": 1052, "uniprot_canonical_ac": "Q39160-1", "length": 1520, "uniprot_id": "MYO5_ARATH", "protein_name": "Myosin-5", "refseq_ac": "NP_173201", "refseq_name": "myosin 1", "gene_name": "XI-1", "gene_names_uniprotkb": "XI-1; F1L3.28; MYA1", "gene_names_refseq": "ARABIDOPSIS MYOSIN 1; ATMYA1; F1L3.28; F1L3_28; MYA1; MYOSIN XI 1; XI-1; myosin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39160", "url": "https://www.uniprot.org/uniprotkb/Q39160" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKVFSLESENKVLRQQTLTI", "down_seq": "PTTRALALRPKTTIIQRTPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1052" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1195", "end_pos": "1195" }, { "start_pos": "1510", "end_pos": "1510" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "502", "end_pos": "502" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39160-1.1195.1195", "start_pos": 1195, "end_pos": 1195, "uniprot_canonical_ac": "Q39160-1", "length": 1520, "uniprot_id": "MYO5_ARATH", "protein_name": "Myosin-5", "refseq_ac": "NP_173201", "refseq_name": "myosin 1", "gene_name": "XI-1", "gene_names_uniprotkb": "XI-1; F1L3.28; MYA1", "gene_names_refseq": "ARABIDOPSIS MYOSIN 1; ATMYA1; F1L3.28; F1L3_28; MYA1; MYOSIN XI 1; XI-1; myosin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39160", "url": "https://www.uniprot.org/uniprotkb/Q39160" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ATLLMFLQRTLKAGATGSIT", "down_seq": "PRRRGMPSSLFGRVSQSFRG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr1195" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1195", "end_pos": "1195" }, { "start_pos": "1510", "end_pos": "1510" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "502", "end_pos": "502" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39160-1.1510.1510", "start_pos": 1510, "end_pos": 1510, "uniprot_canonical_ac": "Q39160-1", "length": 1520, "uniprot_id": "MYO5_ARATH", "protein_name": "Myosin-5", "refseq_ac": "NP_173201", "refseq_name": "myosin 1", "gene_name": "XI-1", "gene_names_uniprotkb": "XI-1; F1L3.28; MYA1", "gene_names_refseq": "ARABIDOPSIS MYOSIN 1; ATMYA1; F1L3.28; F1L3_28; MYA1; MYOSIN XI 1; XI-1; myosin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39160", "url": "https://www.uniprot.org/uniprotkb/Q39160" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSMQNVEVAEVDPPPLIRQN", "down_seq": "NFMFLLERSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1510" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1195", "end_pos": "1195" }, { "start_pos": "1510", "end_pos": "1510" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "502", "end_pos": "502" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39160-1.233.233", "start_pos": 233, "end_pos": 233, "uniprot_canonical_ac": "Q39160-1", "length": 1520, "uniprot_id": "MYO5_ARATH", "protein_name": "Myosin-5", "refseq_ac": "NP_173201", "refseq_name": "myosin 1", "gene_name": "XI-1", "gene_names_uniprotkb": "XI-1; F1L3.28; MYA1", "gene_names_refseq": "ARABIDOPSIS MYOSIN 1; ATMYA1; F1L3.28; F1L3_28; MYA1; MYOSIN XI 1; XI-1; myosin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39160", "url": "https://www.uniprot.org/uniprotkb/Q39160" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GKFVEIQFDKNGRISGAAIR", "down_seq": "YLLERSRVCQISDPERNYHC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr233" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1195", "end_pos": "1195" }, { "start_pos": "1510", "end_pos": "1510" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "502", "end_pos": "502" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39160-1.502.502", "start_pos": 502, "end_pos": 502, "uniprot_canonical_ac": "Q39160-1", "length": 1520, "uniprot_id": "MYO5_ARATH", "protein_name": "Myosin-5", "refseq_ac": "NP_173201", "refseq_name": "myosin 1", "gene_name": "XI-1", "gene_names_uniprotkb": "XI-1; F1L3.28; MYA1", "gene_names_refseq": "ARABIDOPSIS MYOSIN 1; ATMYA1; F1L3.28; F1L3_28; MYA1; MYOSIN XI 1; XI-1; myosin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39160", "url": "https://www.uniprot.org/uniprotkb/Q39160" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.", "journal": "Journal of proteome research", "date": "2012-01-01", "authors": "Mithoe Sharon C, Boersema Paul J, Berke Lidija, Snel Berend, Heck Albert J R, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" } ], "reference": [ { "type": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ] } ], "crossref": [ { "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EFIDNQDVLELIEKKPGGII", "down_seq": "LLDEACMFPKSTHETFSQKL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39160", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39160" }, { "database": "PubMed", "id": "22074104", "url": "https://glygen.org/publication/PubMed/22074104" } ], "site_lbl": "Ser502" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "1052", "end_pos": "1052" }, { "start_pos": "1195", "end_pos": "1195" }, { "start_pos": "1510", "end_pos": "1510" }, { "start_pos": "233", "end_pos": "233" }, { "start_pos": "502", "end_pos": "502" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39193-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "Q39193-1", "length": 361, "uniprot_id": "SRK2I_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2I", "refseq_ac": "NP_001318893", "refseq_name": "sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "gene_name": "SRK2I", "gene_names_uniprotkb": "SRK2I; 41K; MUD21.14; OSKL2; SNRK2.3", "gene_names_refseq": "SNRK2-3; SNRK2.3; SRK2I; SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3; sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CHSMQICHRDLKLENTLLDG", "down_seq": "PAPRLKICDFGYSKSSVLHS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser152" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q39193-1.167.167", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q39193-1.168.168", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q39193-1.172.172", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39193-1.167.167", "start_pos": 167, "end_pos": 167, "uniprot_canonical_ac": "Q39193-1", "length": 361, "uniprot_id": "SRK2I_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2I", "refseq_ac": "NP_001318893", "refseq_name": "sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "gene_name": "SRK2I", "gene_names_uniprotkb": "SRK2I; 41K; MUD21.14; OSKL2; SNRK2.3", "gene_names_refseq": "SNRK2-3; SNRK2.3; SRK2I; SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3; sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLLDGSPAPRLKICDFGYSK", "down_seq": "SVLHSQPKSTVGTPAYIAPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser167" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q39193-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39193-1.168.168", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39193-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q39193-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q39193-1.177.177", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q39193-1.180.180", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39193-1.168.168", "start_pos": 168, "end_pos": 168, "uniprot_canonical_ac": "Q39193-1", "length": 361, "uniprot_id": "SRK2I_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2I", "refseq_ac": "NP_001318893", "refseq_name": "sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "gene_name": "SRK2I", "gene_names_uniprotkb": "SRK2I; 41K; MUD21.14; OSKL2; SNRK2.3", "gene_names_refseq": "SNRK2-3; SNRK2.3; SRK2I; SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3; sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LLDGSPAPRLKICDFGYSKS", "down_seq": "VLHSQPKSTVGTPAYIAPEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser168" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q39193-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39193-1.167.167", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39193-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q39193-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q39193-1.177.177", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q39193-1.180.180", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39193-1.172.172", "start_pos": 172, "end_pos": 172, "uniprot_canonical_ac": "Q39193-1", "length": 361, "uniprot_id": "SRK2I_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2I", "refseq_ac": "NP_001318893", "refseq_name": "sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "gene_name": "SRK2I", "gene_names_uniprotkb": "SRK2I; 41K; MUD21.14; OSKL2; SNRK2.3", "gene_names_refseq": "SNRK2-3; SNRK2.3; SRK2I; SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3; sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-10-13", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Mizoguchi Masahide, Hayashi Shimpei, Myouga Fumiyoshi, Yamaguchi-Shinozaki Kazuko, Ishihama Yasushi, Hirayama Takashi, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "19805022", "url": "https://glygen.org/publication/PubMed/19805022" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19805022", "url": "https://glygen.org/publication/PubMed/19805022", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPAPRLKICDFGYSKSSVLH", "down_seq": "QPKSTVGTPAYIAPEVLLRQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "19805022", "url": "https://glygen.org/publication/PubMed/19805022" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser172" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q39193-1.152.152", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39193-1.167.167", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q39193-1.168.168", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39193-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q39193-1.177.177", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q39193-1.180.180", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39193-1.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "Q39193-1", "length": 361, "uniprot_id": "SRK2I_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2I", "refseq_ac": "NP_001318893", "refseq_name": "sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "gene_name": "SRK2I", "gene_names_uniprotkb": "SRK2I; 41K; MUD21.14; OSKL2; SNRK2.3", "gene_names_refseq": "SNRK2-3; SNRK2.3; SRK2I; SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3; sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" }, { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-10-13", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Mizoguchi Masahide, Hayashi Shimpei, Myouga Fumiyoshi, Yamaguchi-Shinozaki Kazuko, Ishihama Yasushi, Hirayama Takashi, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "19805022", "url": "https://glygen.org/publication/PubMed/19805022" } ] }, { "title": "In planta changes in protein phosphorylation induced by the plant hormone abscisic acid.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010-09-07", "authors": "Kline Kelli G, Barrett-Wilt Gregory A, Sussman Michael R", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19805022", "url": "https://glygen.org/publication/PubMed/19805022", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RLKICDFGYSKSSVLHSQPK", "down_seq": "TVGTPAYIAPEVLLRQEYDG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19805022", "url": "https://glygen.org/publication/PubMed/19805022" }, { "database": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser176" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q39193-1.167.167", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q39193-1.168.168", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q39193-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q39193-1.177.177", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q39193-1.180.180", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39193-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "Q39193-1", "length": 361, "uniprot_id": "SRK2I_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2I", "refseq_ac": "NP_001318893", "refseq_name": "sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "gene_name": "SRK2I", "gene_names_uniprotkb": "SRK2I; 41K; MUD21.14; OSKL2; SNRK2.3", "gene_names_refseq": "SNRK2-3; SNRK2.3; SRK2I; SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3; sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" }, { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009-10-13", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Mizoguchi Masahide, Hayashi Shimpei, Myouga Fumiyoshi, Yamaguchi-Shinozaki Kazuko, Ishihama Yasushi, Hirayama Takashi, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "19805022", "url": "https://glygen.org/publication/PubMed/19805022" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19805022", "url": "https://glygen.org/publication/PubMed/19805022", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LKICDFGYSKSSVLHSQPKS", "down_seq": "VGTPAYIAPEVLLRQEYDGK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "19805022", "url": "https://glygen.org/publication/PubMed/19805022" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr177" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q39193-1.167.167", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q39193-1.168.168", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q39193-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q39193-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q39193-1.180.180", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39193-1.180.180", "start_pos": 180, "end_pos": 180, "uniprot_canonical_ac": "Q39193-1", "length": 361, "uniprot_id": "SRK2I_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2I", "refseq_ac": "NP_001318893", "refseq_name": "sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "gene_name": "SRK2I", "gene_names_uniprotkb": "SRK2I; 41K; MUD21.14; OSKL2; SNRK2.3", "gene_names_refseq": "SNRK2-3; SNRK2.3; SRK2I; SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3; sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "J. Proteomics", "date": "2009", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" }, { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CDFGYSKSSVLHSQPKSTVG", "down_seq": "PAYIAPEVLLRQEYDGKIAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr180" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q39193-1.167.167", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q39193-1.168.168", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q39193-1.172.172", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q39193-1.176.176", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q39193-1.177.177", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39193-1.30.30", "start_pos": 30, "end_pos": 30, "uniprot_canonical_ac": "Q39193-1", "length": 361, "uniprot_id": "SRK2I_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2I", "refseq_ac": "NP_001318893", "refseq_name": "sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "gene_name": "SRK2I", "gene_names_uniprotkb": "SRK2I; 41K; MUD21.14; OSKL2; SNRK2.3", "gene_names_refseq": "SNRK2-3; SNRK2.3; SRK2I; SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3; sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLDMPIMHDSDRYDFVKDIG", "down_seq": "GNFGVARLMRDKLTKELVAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser30" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39193-1.353.353", "start_pos": 353, "end_pos": 353, "uniprot_canonical_ac": "Q39193-1", "length": 361, "uniprot_id": "SRK2I_ARATH", "protein_name": "Serine/threonine-protein kinase SRK2I", "refseq_ac": "NP_001318893", "refseq_name": "sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "gene_name": "SRK2I", "gene_names_uniprotkb": "SRK2I; 41K; MUD21.14; OSKL2; SNRK2.3", "gene_names_refseq": "SNRK2-3; SNRK2.3; SRK2I; SUCROSE NONFERMENTING 1 (SNF1)-RELATED PROTEIN KINASE 2-3; sucrose nonfermenting 1(SNF1)-related protein kinase 2.3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39193", "url": "https://www.uniprot.org/uniprotkb/Q39193" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis Raf-Like Kinase Raf10 Is a Regulatory Component of Core ABA Signaling.", "journal": "Molecules and cells", "date": "2019-09-30", "authors": "Nguyen Quy Thi Cam, Lee Sun-Ji, Choi Seo-Wha, Na Yeon-Ju, Song Mi-Ran, Hoang Quyen Thi Ngoc, Sim Seo Young, Kim Min-Sik, Kim Jeong-Il, Soh Moon-Soo, Kim Soo Young", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" } ], "reference": [ { "type": "PubMed", "id": "31480825", "url": "https://glygen.org/publication/PubMed/31480825" } ] } ], "crossref": [ { "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "31480825", "url": "https://glygen.org/publication/PubMed/31480825", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NLDLDDDMDDFDSESEIDID", "down_seq": "SGEIVYAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39193", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39193" }, { "database": "PubMed", "id": "31480825", "url": "https://glygen.org/publication/PubMed/31480825" } ], "site_lbl": "Ser353" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "152", "end_pos": "152" }, { "start_pos": "167", "end_pos": "167" }, { "start_pos": "168", "end_pos": "168" }, { "start_pos": "172", "end_pos": "172" }, { "start_pos": "176", "end_pos": "176" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "180", "end_pos": "180" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "353", "end_pos": "353" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39219-1.127.127", "start_pos": 127, "end_pos": 127, "uniprot_canonical_ac": "Q39219-1", "length": 354, "uniprot_id": "AOX1A_ARATH", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "refseq_ac": "NP_188876", "refseq_name": "alternative oxidase 1A", "gene_name": "AOX1A", "gene_names_uniprotkb": "AOX1A; AOX1; HSR3; MCB17.11", "gene_names_refseq": "AOX1A; ATAOX1A; AtHSR3; HSR3; alternative oxidase 1A; hyper-sensitivity-related 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Activation of the plant mitochondrial alternative oxidase: insights from site-directed mutagenesis.", "journal": "Biochimica et biophysica acta", "date": "2002-04-22", "authors": "Umbach Ann L, Gonz\u00e0lez-Meler Miquel A, Sweet Charles R, Siedow James N", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "reference": [ { "type": "PubMed", "id": "12034477", "url": "https://glygen.org/publication/PubMed/12034477" } ] }, { "title": "A single amino acid change in the plant alternative oxidase alters the specificity of organic acid activation.", "journal": "FEBS letters", "date": "1999-07-09", "authors": "Djajanegara I, Holtzapffel R, Finnegan P M, Hoefnagel M H, Berthold D A, Wiskich J T, Day D A", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "reference": [ { "type": "PubMed", "id": "10431811", "url": "https://glygen.org/publication/PubMed/10431811" } ] }, { "title": "Regulation of the cyanide-resistant alternative oxidase of plant mitochondria. Identification of the cysteine residue involved in alpha-keto acid stimulation and intersubunit disulfide bond formation.", "journal": "The Journal of biological chemistry", "date": "1998-11-13", "authors": "Rhoads D M, Umbach A L, Sweet C R, Lennon A M, Rauch G S, Siedow J N", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "reference": [ { "type": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] } ], "crossref": [ { "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "12034477", "url": "https://glygen.org/publication/PubMed/12034477", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10431811", "url": "https://glygen.org/publication/PubMed/10431811", "database": "PubMed", "categories": [ "Other" ] }, { "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "YWGVEPNKITKEDGSEWKWN", "down_seq": "FRPWETYKADITIDLKKHHV", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of activity and stimulation by pyruvate.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "12034477", "url": "https://glygen.org/publication/PubMed/12034477" }, { "database": "PubMed", "id": "10431811", "url": "https://glygen.org/publication/PubMed/10431811" }, { "database": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] }, { "sequence_org": "C", "sequence_mut": "D", "comment": "Active enzyme insensitive to stimulation by pyruvate.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "12034477", "url": "https://glygen.org/publication/PubMed/12034477" }, { "database": "PubMed", "id": "10431811", "url": "https://glygen.org/publication/PubMed/10431811" }, { "database": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] }, { "sequence_org": "C", "sequence_mut": "E", "comment": "Active enzyme insensitive to stimulation by pyruvate.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "12034477", "url": "https://glygen.org/publication/PubMed/12034477" }, { "database": "PubMed", "id": "10431811", "url": "https://glygen.org/publication/PubMed/10431811" }, { "database": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] }, { "sequence_org": "C", "sequence_mut": "K", "comment": "Active enzyme insensitive to stimulation by pyruvate.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "12034477", "url": "https://glygen.org/publication/PubMed/12034477" }, { "database": "PubMed", "id": "10431811", "url": "https://glygen.org/publication/PubMed/10431811" }, { "database": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] }, { "sequence_org": "C", "sequence_mut": "L", "comment": "Loss of activity and stimulation by pyruvate.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "12034477", "url": "https://glygen.org/publication/PubMed/12034477" }, { "database": "PubMed", "id": "10431811", "url": "https://glygen.org/publication/PubMed/10431811" }, { "database": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] }, { "sequence_org": "C", "sequence_mut": "Q", "comment": "Loss of activity and stimulation by pyruvate.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "12034477", "url": "https://glygen.org/publication/PubMed/12034477" }, { "database": "PubMed", "id": "10431811", "url": "https://glygen.org/publication/PubMed/10431811" }, { "database": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] }, { "sequence_org": "C", "sequence_mut": "R", "comment": "Active enzyme insensitive to stimulation by pyruvate.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "12034477", "url": "https://glygen.org/publication/PubMed/12034477" }, { "database": "PubMed", "id": "10431811", "url": "https://glygen.org/publication/PubMed/10431811" }, { "database": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] }, { "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of oxidative inactivation and stimulation by pyruvate, but can be activated by succinate.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "12034477", "url": "https://glygen.org/publication/PubMed/12034477" }, { "database": "PubMed", "id": "10431811", "url": "https://glygen.org/publication/PubMed/10431811" }, { "database": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "352", "end_pos": "352" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39219-1.177.177", "start_pos": 177, "end_pos": 177, "uniprot_canonical_ac": "Q39219-1", "length": 354, "uniprot_id": "AOX1A_ARATH", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "refseq_ac": "NP_188876", "refseq_name": "alternative oxidase 1A", "gene_name": "AOX1A", "gene_names_uniprotkb": "AOX1A; AOX1; HSR3; MCB17.11", "gene_names_refseq": "AOX1A; ATAOX1A; AtHSR3; HSR3; alternative oxidase 1A; hyper-sensitivity-related 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Regulation of the cyanide-resistant alternative oxidase of plant mitochondria. Identification of the cysteine residue involved in alpha-keto acid stimulation and intersubunit disulfide bond formation.", "journal": "The Journal of biological chemistry", "date": "1998-11-13", "authors": "Rhoads D M, Umbach A L, Sweet C R, Lennon A M, Rauch G S, Siedow J N", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "reference": [ { "type": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] } ], "crossref": [ { "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "YWTVKSLRWPTDLFFQRRYG", "down_seq": "RAMMLETVAAVPGMVGGMLL", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on stimulation by pyruvate.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "9804851", "url": "https://glygen.org/publication/PubMed/9804851" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "352", "end_pos": "352" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39219-1.264.264", "start_pos": 264, "end_pos": 264, "uniprot_canonical_ac": "Q39219-1", "length": 354, "uniprot_id": "AOX1A_ARATH", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "refseq_ac": "NP_188876", "refseq_name": "alternative oxidase 1A", "gene_name": "AOX1A", "gene_names_uniprotkb": "AOX1A; AOX1; HSR3; MCB17.11", "gene_names_refseq": "AOX1A; ATAOX1A; AtHSR3; HSR3; alternative oxidase 1A; hyper-sensitivity-related 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Isolation of mutants of the Arabidopsis thaliana alternative oxidase (ubiquinol:oxygen oxidoreductase) resistant to salicylhydroxamic acid.", "journal": "Biochimica et biophysica acta", "date": "1998-04-14", "authors": "Berthold D A", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "reference": [ { "type": "PubMed", "id": "9554960", "url": "https://glygen.org/publication/PubMed/9554960" } ] } ], "crossref": [ { "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9554960", "url": "https://glygen.org/publication/PubMed/9554960", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "ITVQGVFFNAYFLGYLISPK", "down_seq": "AHRMVGYLEEEAIHSYTEFL", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "L", "comment": "Increased resistance to a substrate-analog inhibitor.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "9554960", "url": "https://glygen.org/publication/PubMed/9554960" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "352", "end_pos": "352" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q39219-1.268.268", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39219-1.268.268", "start_pos": 268, "end_pos": 268, "uniprot_canonical_ac": "Q39219-1", "length": 354, "uniprot_id": "AOX1A_ARATH", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "refseq_ac": "NP_188876", "refseq_name": "alternative oxidase 1A", "gene_name": "AOX1A", "gene_names_uniprotkb": "AOX1A; AOX1; HSR3; MCB17.11", "gene_names_refseq": "AOX1A; ATAOX1A; AtHSR3; HSR3; alternative oxidase 1A; hyper-sensitivity-related 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Isolation of mutants of the Arabidopsis thaliana alternative oxidase (ubiquinol:oxygen oxidoreductase) resistant to salicylhydroxamic acid.", "journal": "Biochimica et biophysica acta", "date": "1998-04-14", "authors": "Berthold D A", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "reference": [ { "type": "PubMed", "id": "9554960", "url": "https://glygen.org/publication/PubMed/9554960" } ] } ], "crossref": [ { "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9554960", "url": "https://glygen.org/publication/PubMed/9554960", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "GVFFNAYFLGYLISPKFAHR", "down_seq": "VGYLEEEAIHSYTEFLKELD", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "I", "comment": "Increased resistance to a substrate-analog inhibitor.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "9554960", "url": "https://glygen.org/publication/PubMed/9554960" } ] }, { "sequence_org": "M", "sequence_mut": "V", "comment": "Increased resistance to a substrate-analog inhibitor.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "9554960", "url": "https://glygen.org/publication/PubMed/9554960" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "352", "end_pos": "352" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q39219-1.264.264", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39219-1.352.352", "start_pos": 352, "end_pos": 352, "uniprot_canonical_ac": "Q39219-1", "length": 354, "uniprot_id": "AOX1A_ARATH", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "refseq_ac": "NP_188876", "refseq_name": "alternative oxidase 1A", "gene_name": "AOX1A", "gene_names_uniprotkb": "AOX1A; AOX1; HSR3; MCB17.11", "gene_names_refseq": "AOX1A; ATAOX1A; AtHSR3; HSR3; alternative oxidase 1A; hyper-sensitivity-related 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Isolation of mutants of the Arabidopsis thaliana alternative oxidase (ubiquinol:oxygen oxidoreductase) resistant to salicylhydroxamic acid.", "journal": "Biochimica et biophysica acta", "date": "1998-04-14", "authors": "Berthold D A", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "reference": [ { "type": "PubMed", "id": "9554960", "url": "https://glygen.org/publication/PubMed/9554960" } ] } ], "crossref": [ { "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "9554960", "url": "https://glygen.org/publication/PubMed/9554960", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "HFASDIHYQGRELKEAPAPI", "down_seq": "YH", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "E", "comment": "Increased resistance to a substrate-analog inhibitor.", "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" }, { "database": "PubMed", "id": "9554960", "url": "https://glygen.org/publication/PubMed/9554960" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "352", "end_pos": "352" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39219-1.228.228", "start_pos": 228, "end_pos": 228, "uniprot_canonical_ac": "Q39219-1", "length": 354, "uniprot_id": "AOX1A_ARATH", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "refseq_ac": "NP_188876", "refseq_name": "alternative oxidase 1A", "gene_name": "AOX1A", "gene_names_uniprotkb": "AOX1A; AOX1; HSR3; MCB17.11", "gene_names_refseq": "AOX1A; ATAOX1A; AtHSR3; HSR3; alternative oxidase 1A; hyper-sensitivity-related 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q39219", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39219" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q39219", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39219", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SGGWIKALLEEAENERMHLM", "down_seq": "FMEVAKPKWYERALVITVQG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39219", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39219" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr228" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "127", "end_pos": "127" }, { "start_pos": "177", "end_pos": "177" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "268", "end_pos": "268" }, { "start_pos": "352", "end_pos": "352" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39234-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "Q39234-1", "length": 384, "uniprot_id": "TGA3_ARATH", "protein_name": "Transcription factor TGA3", "refseq_ac": "NP_564156", "refseq_name": "transcription factor TGA3", "gene_name": "TGA3", "gene_names_uniprotkb": "TGA3; BZIP22; F2E2.14", "gene_names_refseq": "F2E2.14; F2E2_14; TGA1A-related gene 3; TGA3; TRANSCRIPTION FACTOR TGA3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39234", "url": "https://www.uniprot.org/uniprotkb/Q39234" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Salicylic acid-activated BIN2 phosphorylation of TGA3 promotes Arabidopsis\u00a0PR gene expression and disease resistance.", "journal": "The EMBO journal", "date": "2022-10-04", "authors": "Han Qing, Tan Wenrong, Zhao Yuqing, Yang Feng, Yao Xiuhong, Lin Honghui, Zhang Dawei", "evidence": [ { "database": "iPTMnet", "id": "Q39234", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39234" } ], "reference": [ { "type": "PubMed", "id": "35950443", "url": "https://glygen.org/publication/PubMed/35950443" } ] } ], "crossref": [ { "id": "Q39234", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39234", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "35950443", "url": "https://glygen.org/publication/PubMed/35950443", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VVSFRDMGMYEPFQQLSGWE", "down_seq": "PFKSDINNITSNQNNNQSSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39234", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39234" }, { "database": "PubMed", "id": "35950443", "url": "https://glygen.org/publication/PubMed/35950443" } ], "site_lbl": "Ser33" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39255-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "Q39255-1", "length": 160, "uniprot_id": "SKP1A_ARATH", "protein_name": "SKP1-like protein 1A", "refseq_ac": "NP_565123", "refseq_name": "S phase kinase-associated protein 1", "gene_name": "SKP1A", "gene_names_uniprotkb": "SKP1A; ASK1; SKP1; T4O12.17; UIP1", "gene_names_refseq": "ARABIDOPSIS SKP1 HOMOLOGUE 1; ASK1; ATSKP1; S phase kinase-associated protein 1; SKP1A; SKP1; T4O12.17; T4O12_17; UFO INTERACTING PROTEIN 1; UIP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NIKNLLDLTCQTVADMIKGK", "down_seq": "PEEIRTTFNIKNDFTPEEEE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr129" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "upstream", "id": "Q39255-1.144.144", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39255-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "Q39255-1", "length": 160, "uniprot_id": "SKP1A_ARATH", "protein_name": "SKP1-like protein 1A", "refseq_ac": "NP_565123", "refseq_name": "S phase kinase-associated protein 1", "gene_name": "SKP1A", "gene_names_uniprotkb": "SKP1A; ASK1; SKP1; T4O12.17; UIP1", "gene_names_refseq": "ARABIDOPSIS SKP1 HOMOLOGUE 1; ASK1; ATSKP1; S phase kinase-associated protein 1; SKP1A; SKP1; T4O12.17; T4O12_17; UFO INTERACTING PROTEIN 1; UIP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MIKGKTPEEIRTTFNIKNDF", "down_seq": "PEEEEEVRRENQWAFE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr144" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q39255-1.129.129", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q39255-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q39255-1", "length": 160, "uniprot_id": "SKP1A_ARATH", "protein_name": "SKP1-like protein 1A", "refseq_ac": "NP_565123", "refseq_name": "S phase kinase-associated protein 1", "gene_name": "SKP1A", "gene_names_uniprotkb": "SKP1A; ASK1; SKP1; T4O12.17; UIP1", "gene_names_refseq": "ARABIDOPSIS SKP1 HOMOLOGUE 1; ASK1; ATSKP1; S phase kinase-associated protein 1; SKP1A; SKP1; T4O12.17; T4O12_17; UFO INTERACTING PROTEIN 1; UIP1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CKRHVEAAASKAEAVEGAAT", "down_seq": "DDDLKAWDADFMKIDQATLF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q39255", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q39255" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser79" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "129", "end_pos": "129" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "79", "end_pos": "79" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q3E880-1.44.44", "start_pos": 44, "end_pos": 44, "uniprot_canonical_ac": "Q3E880-1", "length": 116, "uniprot_id": "GLV11_ARATH", "protein_name": "Protein GOLVEN 11", "refseq_ac": "NP_001119468", "refseq_name": "root meristem growth factor 1", "gene_name": "GLV11", "gene_names_uniprotkb": "GLV11; CLEL8; MAE1.14; RGF1", "gene_names_refseq": "GLV11; GOLVEN 11; MAE1.14; MAE1_14; RGF1; root meristem growth factor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q3E880", "url": "https://www.uniprot.org/uniprotkb/Q3E880" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q3E880", "url": "https://www.uniprot.org/uniprotkb/Q3E880", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NANFNSQAPQMKNSEGLGAS", "down_seq": "GTQIAKKHAEDVIENRKTLK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn44", "evidence": [ { "id": "Q3E880", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q3E880#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "44", "end_pos": "44" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9LMA8-1.202.228", "start_pos": 202, "end_pos": 228, "uniprot_canonical_ac": "Q9LMA8-1", "length": 253, "uniprot_id": "TI10A_ARATH", "protein_name": "Protein TIFY 10A", "refseq_ac": "NP_001319041", "refseq_name": "jasmonate-zim-domain protein 1", "gene_name": "JAZ1; TIFY10A", "gene_names_uniprotkb": "JAZ1; TIFY10A; AtJAZ1; JAZ1; T29M8.5; T29M8_5; TIFY10A; jasmonate-zim-domain protein 1", "gene_names_refseq": "AtJAZ1; JAZ1; T29M8.5; T29M8_5; TIFY10A; jasmonate-zim-domain protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling.", "journal": "Nature", "date": "2007-08-09", "authors": "Thines Bryan, Katsir Leron, Melotto Maeli, Niu Yajie, Mandaokar Ajin, Liu Guanghui, Nomura Kinya, He Sheng Yang, Howe Gregg A, Browse John", "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "reference": [ { "type": "PubMed", "id": "17637677", "url": "https://glygen.org/publication/PubMed/17637677" } ] } ], "crossref": [ { "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17637677", "url": "https://glygen.org/publication/PubMed/17637677", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "PIARRASLHRFLEKRKDRVTSKAPYQL", "start_aa": "P", "up_seq": "PRKTTTQEPIQSSPTPLTEL", "down_seq": "CDPAKASSNPQTTGNMSWLG", "mutagenesis": [ { "sequence_org": "PIARRASLHRFLEKRKDRVTSKAPYQL", "sequence_mut": "", "comment": "In jaz1delta3A; dominant mutation that confers jasmonate insensitivity.", "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" }, { "database": "PubMed", "id": "17637677", "url": "https://glygen.org/publication/PubMed/17637677" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "228" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "205", "end_pos": "206" }, { "start_pos": "206", "end_pos": "206" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LMA8-1.205.205", "start_pos": 205, "end_pos": 205, "uniprot_canonical_ac": "Q9LMA8-1", "length": 253, "uniprot_id": "TI10A_ARATH", "protein_name": "Protein TIFY 10A", "refseq_ac": "NP_001319041", "refseq_name": "jasmonate-zim-domain protein 1", "gene_name": "JAZ1; TIFY10A", "gene_names_uniprotkb": "JAZ1; TIFY10A; AtJAZ1; JAZ1; T29M8.5; T29M8_5; TIFY10A; jasmonate-zim-domain protein 1", "gene_names_refseq": "AtJAZ1; JAZ1; T29M8.5; T29M8_5; TIFY10A; jasmonate-zim-domain protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "TTTQEPIQSSPTPLTELPIA", "down_seq": "RASLHRFLEKRKDRVTSKAP", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of binding to COI1 but no effect on MYC2 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "228" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "205", "end_pos": "206" }, { "start_pos": "206", "end_pos": "206" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "upstream", "id": "Q9LMA8-1.205.206", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9LMA8-1.206.206", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9LMA8-1.205.206", "start_pos": 205, "end_pos": 206, "uniprot_canonical_ac": "Q9LMA8-1", "length": 253, "uniprot_id": "TI10A_ARATH", "protein_name": "Protein TIFY 10A", "refseq_ac": "NP_001319041", "refseq_name": "jasmonate-zim-domain protein 1", "gene_name": "JAZ1; TIFY10A", "gene_names_uniprotkb": "JAZ1; TIFY10A; AtJAZ1; JAZ1; T29M8.5; T29M8_5; TIFY10A; jasmonate-zim-domain protein 1", "gene_names_refseq": "AtJAZ1; JAZ1; T29M8.5; T29M8_5; TIFY10A; jasmonate-zim-domain protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Viral effector protein manipulates host hormone signaling to attract insect vectors.", "journal": "Cell research", "date": "2017-03", "authors": "Wu Dewei, Qi Tiancong, Li Wan-Xiang, Tian Haixia, Gao Hua, Wang Jiaojiao, Ge Jin, Yao Ruifeng, Ren Chunmei, Wang Xian-Bing, Liu Yule, Kang Le, Ding Shou-Wei, Xie Daoxin", "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "reference": [ { "type": "PubMed", "id": "28059067", "url": "https://glygen.org/publication/PubMed/28059067" } ] }, { "title": "A critical role of two positively charged amino acids in the Jas motif of Arabidopsis JAZ proteins in mediating coronatine- and jasmonoyl isoleucine-dependent interactions with the COI1 F-box protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2008-09", "authors": "Melotto Maeli, Mecey Christy, Niu Yajie, Chung Hoo Sun, Katsir Leron, Yao Jian, Zeng Weiqing, Thines Bryan, Staswick Paul, Browse John, Howe Gregg A, He Sheng Yang", "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "reference": [ { "type": "PubMed", "id": "18547396", "url": "https://glygen.org/publication/PubMed/18547396" } ] } ], "crossref": [ { "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28059067", "url": "https://glygen.org/publication/PubMed/28059067", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18547396", "url": "https://glygen.org/publication/PubMed/18547396", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "RR", "start_aa": "R", "up_seq": "TTTQEPIQSSPTPLTELPIA", "down_seq": "ASLHRFLEKRKDRVTSKAPY", "mutagenesis": [ { "sequence_org": "RR", "sequence_mut": "AA", "comment": "Loss of binding to COI1 and jasmonate insensitivity. No effect on MYC2 binding. Partial loss of interaction with CCMVORF2b protein.", "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" }, { "database": "PubMed", "id": "28059067", "url": "https://glygen.org/publication/PubMed/28059067" }, { "database": "PubMed", "id": "18547396", "url": "https://glygen.org/publication/PubMed/18547396" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "228" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "205", "end_pos": "206" }, { "start_pos": "206", "end_pos": "206" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "downstream", "id": "Q9LMA8-1.205.205", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "upstream", "id": "Q9LMA8-1.206.206", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9LMA8-1.206.206", "start_pos": 206, "end_pos": 206, "uniprot_canonical_ac": "Q9LMA8-1", "length": 253, "uniprot_id": "TI10A_ARATH", "protein_name": "Protein TIFY 10A", "refseq_ac": "NP_001319041", "refseq_name": "jasmonate-zim-domain protein 1", "gene_name": "JAZ1; TIFY10A", "gene_names_uniprotkb": "JAZ1; TIFY10A; AtJAZ1; JAZ1; T29M8.5; T29M8_5; TIFY10A; jasmonate-zim-domain protein 1", "gene_names_refseq": "AtJAZ1; JAZ1; T29M8.5; T29M8_5; TIFY10A; jasmonate-zim-domain protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "TTQEPIQSSPTPLTELPIAR", "down_seq": "ASLHRFLEKRKDRVTSKAPY", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of binding to COI1but no effect on MYC2 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "228" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "205", "end_pos": "206" }, { "start_pos": "206", "end_pos": "206" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9LMA8-1.205.205", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "downstream", "id": "Q9LMA8-1.205.206", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9LMA8-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "Q9LMA8-1", "length": 253, "uniprot_id": "TI10A_ARATH", "protein_name": "Protein TIFY 10A", "refseq_ac": "NP_001319041", "refseq_name": "jasmonate-zim-domain protein 1", "gene_name": "JAZ1; TIFY10A", "gene_names_uniprotkb": "JAZ1; TIFY10A; AtJAZ1; JAZ1; T29M8.5; T29M8_5; TIFY10A; jasmonate-zim-domain protein 1", "gene_names_refseq": "AtJAZ1; JAZ1; T29M8.5; T29M8_5; TIFY10A; jasmonate-zim-domain protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9LMA8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LMA8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9LMA8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LMA8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNMDSMVQDVKPTNLFPRQP", "down_seq": "FSSSSSSLPKEDVLKMTQTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9LMA8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9LMA8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser95" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "228" }, { "start_pos": "205", "end_pos": "205" }, { "start_pos": "205", "end_pos": "206" }, { "start_pos": "206", "end_pos": "206" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "95", "end_pos": "95" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42371-1.221.221", "start_pos": 221, "end_pos": 221, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VGNISPDLCQLTGLWYFDVR", "down_seq": "NSLTGSIPETIGNCTAFQVL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn221", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q42371-1.234.234", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.234.234", "start_pos": 234, "end_pos": 234, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LWYFDVRNNSLTGSIPETIG", "down_seq": "CTAFQVLDLSYNQLTGEIPF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn234", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q42371-1.221.221", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.305.305", "start_pos": 305, "end_pos": 305, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LAVLDLSGNLLSGSIPPILG", "down_seq": "LTFTEKLYLHSNKLTGSIPP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn305", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.329.329", "start_pos": 329, "end_pos": 329, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TEKLYLHSNKLTGSIPPELG", "down_seq": "MSKLHYLELNDNHLTGHIPP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn329", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.409.409", "start_pos": 409, "end_pos": 409, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NKFSGTIPRAFQKLESMTYL", "down_seq": "LSSNNIKGPIPVELSRIGNL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn409", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.457.457", "start_pos": 457, "end_pos": 457, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NKINGIIPSSLGDLEHLLKM", "down_seq": "LSRNHITGVVPGDFGNLRSI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn457", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.510.510", "start_pos": 510, "end_pos": 510, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PIPEELNQLQNIILLRLENN", "down_seq": "LTGNVGSLANCLSLTVLNVS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn510", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "upstream", "id": "Q42371-1.528.528", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.528.528", "start_pos": 528, "end_pos": 528, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NNNLTGNVGSLANCLSLTVL", "down_seq": "VSHNNLVGDIPKNNNFSRFS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn528", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q42371-1.510.510", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q42371-1.543.543", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.543.543", "start_pos": 543, "end_pos": 543, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SLTVLNVSHNNLVGDIPKNN", "down_seq": "FSRFSPDSFIGNPGLCGSWL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn543", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q42371-1.528.528", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.65.65", "start_pos": 65, "end_pos": 65, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YDWTTSPSSDYCVWRGVSCE", "down_seq": "VTFNVVALNLSDLNLDGEIS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn65", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q42371-1.74.74", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.74.74", "start_pos": 74, "end_pos": 74, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DYCVWRGVSCENVTFNVVAL", "down_seq": "LSDLNLDGEISPAIGDLKSL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "Q42371", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q42371#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q42371-1.65.65", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.282.282", "start_pos": 282, "end_pos": 282, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Interaction of auxin and ERECTA in elaborating Arabidopsis inflorescence architecture revealed by the activation tagging of a new member of the YUCCA family putative flavin monooxygenases.", "journal": "Plant physiology", "date": "2005-09", "authors": "Woodward Claire, Bemis Shannon M, Hill Emi J, Sawa Shinichiro, Koshiba Tomokazu, Torii Keiko U", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "reference": [ { "type": "PubMed", "id": "16126863", "url": "https://glygen.org/publication/PubMed/16126863" } ] }, { "title": "The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats.", "journal": "The Plant cell", "date": "1996-04", "authors": "Torii K U, Mitsukawa N, Oosumi T, Matsuura Y, Yokoyama R, Whittier R F, Komeda Y", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "reference": [ { "type": "PubMed", "id": "8624444", "url": "https://glygen.org/publication/PubMed/8624444" } ] } ], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16126863", "url": "https://glygen.org/publication/PubMed/16126863", "database": "PubMed", "categories": [ "Other" ] }, { "id": "8624444", "url": "https://glygen.org/publication/PubMed/8624444", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "M", "start_aa": "M", "up_seq": "ATLSLQGNQLSGKIPSVIGL", "down_seq": "QALAVLDLSGNLLSGSIPPI", "mutagenesis": [ { "sequence_org": "M", "sequence_mut": "I", "comment": "In er-103; compact inflorescence with short siliques, but normal leaves.", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" }, { "database": "PubMed", "id": "16126863", "url": "https://glygen.org/publication/PubMed/16126863" }, { "database": "PubMed", "id": "8624444", "url": "https://glygen.org/publication/PubMed/8624444" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42371-1.489.489", "start_pos": 489, "end_pos": 489, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ERECTA receptor-like kinase and heterotrimeric G protein from Arabidopsis are required for resistance to the necrotrophic fungus Plectosphaerella cucumerina.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-07", "authors": "Llorente Francisco, Alonso-Blanco Carlos, S\u00e1nchez-Rodriguez Clara, Jorda Luc\u00eda, Molina Antonio", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "reference": [ { "type": "PubMed", "id": "15998304", "url": "https://glygen.org/publication/PubMed/15998304" } ] } ], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15998304", "url": "https://glygen.org/publication/PubMed/15998304", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "GDFGNLRSIMEIDLSNNDIS", "down_seq": "PIPEELNQLQNIILLRLENN", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "D", "comment": "In er-117; compact inflorescence with short siliques and pedicels, and susceptibility to P.cucumerina.", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" }, { "database": "PubMed", "id": "15998304", "url": "https://glygen.org/publication/PubMed/15998304" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42371-1.831.831", "start_pos": 831, "end_pos": 831, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "ERECTA receptor-like kinase and heterotrimeric G protein from Arabidopsis are required for resistance to the necrotrophic fungus Plectosphaerella cucumerina.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-07", "authors": "Llorente Francisco, Alonso-Blanco Carlos, S\u00e1nchez-Rodriguez Clara, Jorda Luc\u00eda, Molina Antonio", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "reference": [ { "type": "PubMed", "id": "15998304", "url": "https://glygen.org/publication/PubMed/15998304" } ] } ], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15998304", "url": "https://glygen.org/publication/PubMed/15998304", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "GTIGYIDPEYARTSRLTEKS", "down_seq": "VYSYGIVLLELLTRRKAVDD", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "In er-114; compact inflorescence with short siliques and pedicels, and susceptibility to P.cucumerina.", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" }, { "database": "PubMed", "id": "15998304", "url": "https://glygen.org/publication/PubMed/15998304" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q42371-1.815.815", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q42371-1.823.823", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42371-1.645.645", "start_pos": 645, "end_pos": 645, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLVILHMNMALHVYEDIMRM", "down_seq": "ENLSEKYIIGHGASSTVYKC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "site_lbl": "Thr645" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.721.721", "start_pos": 721, "end_pos": 721, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HRNLVSLQAYSLSHLGSLLF", "down_seq": "DYLENGSLWDLLHGPTKKKT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "site_lbl": "Tyr721" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.760.760", "start_pos": 760, "end_pos": 760, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KTLDWDTRLKIAYGAAQGLA", "down_seq": "LHHDCSPRIIHRDVKSSNIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "site_lbl": "Tyr760" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.815.815", "start_pos": 815, "end_pos": 815, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "AKSLCVSKSHTSTYVMGTIG", "down_seq": "IDPEYARTSRLTEKSDVYSY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "site_lbl": "Tyr815" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q42371-1.823.823", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q42371-1.831.831", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.823.823", "start_pos": 823, "end_pos": 823, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SHTSTYVMGTIGYIDPEYAR", "down_seq": "SRLTEKSDVYSYGIVLLELL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "site_lbl": "Thr823" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q42371-1.815.815", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q42371-1.831.831", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q42371-1.975.975", "start_pos": 975, "end_pos": 975, "uniprot_canonical_ac": "Q42371-1", "length": 976, "uniprot_id": "ERECT_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase ERECTA", "refseq_ac": "NP_180201", "refseq_name": "Leucine-rich receptor-like protein kinase family protein", "gene_name": "ERECTA", "gene_names_uniprotkb": "ERECTA; ER; QRP1; QRS1; T1D16.3; TE1", "gene_names_refseq": "ERECTA; ER; QRP1; QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1; T1D16.3; T1D16_3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42371", "url": "https://www.uniprot.org/uniprotkb/Q42371" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q42371", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42371" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q42371", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42371", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SMSASDAQLFLRFGQVISQN", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42371", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42371" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser975" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "221", "end_pos": "221" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "305", "end_pos": "305" }, { "start_pos": "329", "end_pos": "329" }, { "start_pos": "409", "end_pos": "409" }, { "start_pos": "457", "end_pos": "457" }, { "start_pos": "510", "end_pos": "510" }, { "start_pos": "528", "end_pos": "528" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "65", "end_pos": "65" }, { "start_pos": "74", "end_pos": "74" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "282", "end_pos": "282" }, { "start_pos": "489", "end_pos": "489" }, { "start_pos": "831", "end_pos": "831" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "645", "end_pos": "645" }, { "start_pos": "721", "end_pos": "721" }, { "start_pos": "760", "end_pos": "760" }, { "start_pos": "815", "end_pos": "815" }, { "start_pos": "823", "end_pos": "823" }, { "start_pos": "975", "end_pos": "975" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q42384-1.145.145", "start_pos": 145, "end_pos": 145, "uniprot_canonical_ac": "Q42384-1", "length": 486, "uniprot_id": "PRL1_ARATH", "protein_name": "Protein pleiotropic regulatory locus 1", "refseq_ac": "NP_193325", "refseq_name": "pleiotropic regulatory locus 1", "gene_name": "PRL1", "gene_names_uniprotkb": "PRL1; FCAALL.40; MAC2; dl3990w", "gene_names_refseq": "DL3990W; FCAALL.40; PRL1 PROTEIN; PRL1; pleiotropic regulatory locus 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q42384", "url": "https://www.uniprot.org/uniprotkb/Q42384" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q42384", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42384" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q42384", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42384" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q42384", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42384" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] }, { "title": "The ATR-WEE1 kinase module inhibits the MAC complex to regulate replication stress response.", "journal": "Nucleic acids research", "date": "2021-02-22", "authors": "Wang Lili, Zhan Li, Zhao Yan, Huang Yongchi, Wu Chong, Pan Ting, Qin Qi, Xu Yiren, Deng Zhiping, Li Jing, Hu Honghong, Xue Shaowu, Yan Shunping", "evidence": [ { "database": "iPTMnet", "id": "Q42384", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42384" } ], "reference": [ { "type": "PubMed", "id": "33450002", "url": "https://glygen.org/publication/PubMed/33450002" } ] } ], "crossref": [ { "id": "Q42384", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42384", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] }, { "id": "33450002", "url": "https://glygen.org/publication/PubMed/33450002", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSGKSTTIIPANVSSYQRNL", "down_seq": "TAALMERIPSRWPRPEWHAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q42384", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q42384" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "PubMed", "id": "33450002", "url": "https://glygen.org/publication/PubMed/33450002" } ], "site_lbl": "Ser145" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "145", "end_pos": "145" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4VP08-1.23.23", "start_pos": 23, "end_pos": 23, "uniprot_canonical_ac": "Q4VP08-1", "length": 90, "uniprot_id": "LUR12_ARATH", "protein_name": "Protein LURE 1.2", "refseq_ac": "NP_001078701", "refseq_name": "Putative membrane lipoprotein", "gene_name": "LURE1.2", "gene_names_uniprotkb": "LURE1.2; CRP810_1.2; MWF20.23", "gene_names_refseq": "AtLURE1.2; CRP810_1.2; LURE 1.2; LURE1.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LPIIFLTLLIFVSSCTSTLI", "down_seq": "GSSDEERTYSFSPTTSPFDP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn23", "evidence": [ { "id": "Q4VP08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4VP08#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "23", "end_pos": "23" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "67", "end_pos": "67" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q4VP08-1.67.67", "start_pos": 67, "end_pos": 67, "uniprot_canonical_ac": "Q4VP08-1", "length": 90, "uniprot_id": "LUR12_ARATH", "protein_name": "Protein LURE 1.2", "refseq_ac": "NP_001078701", "refseq_name": "Putative membrane lipoprotein", "gene_name": "LURE1.2", "gene_names_uniprotkb": "LURE1.2; CRP810_1.2; MWF20.23", "gene_names_refseq": "AtLURE1.2; CRP810_1.2; LURE 1.2; LURE1.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for receptor recognition of pollen tube attraction peptides.", "journal": "Nature communications", "date": "2017-11-06", "authors": "Zhang Xiaoxiao, Liu Weijia, Nagae Takuya T, Takeuchi Hidenori, Zhang Heqiao, Han Zhifu, Higashiyama Tetsuya, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "reference": [ { "type": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "crossref": [ { "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "NQELKIGRIGYCFDCARACM", "down_seq": "RGKYIRTCSFERKLCRCSIS", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "G", "comment": "Compromised interaction with PRK6; when associated with G-68 and G-70.", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" }, { "database": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "23", "end_pos": "23" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "67", "end_pos": "67" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q4VP08-1.68.68", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q4VP08-1.70.70", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q4VP08-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q4VP08-1.79.79", "categories": [ "mutagenesis_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q4VP08-1.83.83", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4VP08-1.68.68", "start_pos": 68, "end_pos": 68, "uniprot_canonical_ac": "Q4VP08-1", "length": 90, "uniprot_id": "LUR12_ARATH", "protein_name": "Protein LURE 1.2", "refseq_ac": "NP_001078701", "refseq_name": "Putative membrane lipoprotein", "gene_name": "LURE1.2", "gene_names_uniprotkb": "LURE1.2; CRP810_1.2; MWF20.23", "gene_names_refseq": "AtLURE1.2; CRP810_1.2; LURE 1.2; LURE1.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for receptor recognition of pollen tube attraction peptides.", "journal": "Nature communications", "date": "2017-11-06", "authors": "Zhang Xiaoxiao, Liu Weijia, Nagae Takuya T, Takeuchi Hidenori, Zhang Heqiao, Han Zhifu, Higashiyama Tetsuya, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "reference": [ { "type": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "crossref": [ { "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "QELKIGRIGYCFDCARACMR", "down_seq": "GKYIRTCSFERKLCRCSISD", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduced interaction with PRK6. Normal pollen tube attraction.", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" }, { "database": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] }, { "sequence_org": "R", "sequence_mut": "G", "comment": "Compromised interaction with PRK6; when associated with G-67 and G-70.", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" }, { "database": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "23", "end_pos": "23" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "67", "end_pos": "67" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q4VP08-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q4VP08-1.70.70", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q4VP08-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q4VP08-1.79.79", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q4VP08-1.83.83", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4VP08-1.70.70", "start_pos": 70, "end_pos": 70, "uniprot_canonical_ac": "Q4VP08-1", "length": 90, "uniprot_id": "LUR12_ARATH", "protein_name": "Protein LURE 1.2", "refseq_ac": "NP_001078701", "refseq_name": "Putative membrane lipoprotein", "gene_name": "LURE1.2", "gene_names_uniprotkb": "LURE1.2; CRP810_1.2; MWF20.23", "gene_names_refseq": "AtLURE1.2; CRP810_1.2; LURE 1.2; LURE1.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for receptor recognition of pollen tube attraction peptides.", "journal": "Nature communications", "date": "2017-11-06", "authors": "Zhang Xiaoxiao, Liu Weijia, Nagae Takuya T, Takeuchi Hidenori, Zhang Heqiao, Han Zhifu, Higashiyama Tetsuya, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "reference": [ { "type": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "crossref": [ { "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LKIGRIGYCFDCARACMRRG", "down_seq": "YIRTCSFERKLCRCSISDIK", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "G", "comment": "Compromised interaction with PRK6; when associated with G-67 and G-68.", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" }, { "database": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "23", "end_pos": "23" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "67", "end_pos": "67" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q4VP08-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q4VP08-1.68.68", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q4VP08-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q4VP08-1.79.79", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q4VP08-1.83.83", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4VP08-1.73.73", "start_pos": 73, "end_pos": 73, "uniprot_canonical_ac": "Q4VP08-1", "length": 90, "uniprot_id": "LUR12_ARATH", "protein_name": "Protein LURE 1.2", "refseq_ac": "NP_001078701", "refseq_name": "Putative membrane lipoprotein", "gene_name": "LURE1.2", "gene_names_uniprotkb": "LURE1.2; CRP810_1.2; MWF20.23", "gene_names_refseq": "AtLURE1.2; CRP810_1.2; LURE 1.2; LURE1.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for receptor recognition of pollen tube attraction peptides.", "journal": "Nature communications", "date": "2017-11-06", "authors": "Zhang Xiaoxiao, Liu Weijia, Nagae Takuya T, Takeuchi Hidenori, Zhang Heqiao, Han Zhifu, Higashiyama Tetsuya, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "reference": [ { "type": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "crossref": [ { "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "GRIGYCFDCARACMRRGKYI", "down_seq": "TCSFERKLCRCSISDIK", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduced interaction with PRK6. Normal pollen tube attraction.", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" }, { "database": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "23", "end_pos": "23" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "67", "end_pos": "67" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q4VP08-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q4VP08-1.68.68", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q4VP08-1.70.70", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q4VP08-1.79.79", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q4VP08-1.83.83", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4VP08-1.79.79", "start_pos": 79, "end_pos": 79, "uniprot_canonical_ac": "Q4VP08-1", "length": 90, "uniprot_id": "LUR12_ARATH", "protein_name": "Protein LURE 1.2", "refseq_ac": "NP_001078701", "refseq_name": "Putative membrane lipoprotein", "gene_name": "LURE1.2", "gene_names_uniprotkb": "LURE1.2; CRP810_1.2; MWF20.23", "gene_names_refseq": "AtLURE1.2; CRP810_1.2; LURE 1.2; LURE1.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for receptor recognition of pollen tube attraction peptides.", "journal": "Nature communications", "date": "2017-11-06", "authors": "Zhang Xiaoxiao, Liu Weijia, Nagae Takuya T, Takeuchi Hidenori, Zhang Heqiao, Han Zhifu, Higashiyama Tetsuya, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "reference": [ { "type": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "crossref": [ { "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "FDCARACMRRGKYIRTCSFE", "down_seq": "KLCRCSISDIK", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Reduced interaction with PRK6. Normal pollen tube attraction.", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" }, { "database": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "23", "end_pos": "23" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "67", "end_pos": "67" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q4VP08-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q4VP08-1.68.68", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q4VP08-1.70.70", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q4VP08-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q4VP08-1.83.83", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q4VP08-1.83.83", "start_pos": 83, "end_pos": 83, "uniprot_canonical_ac": "Q4VP08-1", "length": 90, "uniprot_id": "LUR12_ARATH", "protein_name": "Protein LURE 1.2", "refseq_ac": "NP_001078701", "refseq_name": "Putative membrane lipoprotein", "gene_name": "LURE1.2", "gene_names_uniprotkb": "LURE1.2; CRP810_1.2; MWF20.23", "gene_names_refseq": "AtLURE1.2; CRP810_1.2; LURE 1.2; LURE1.2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis for receptor recognition of pollen tube attraction peptides.", "journal": "Nature communications", "date": "2017-11-06", "authors": "Zhang Xiaoxiao, Liu Weijia, Nagae Takuya T, Takeuchi Hidenori, Zhang Heqiao, Han Zhifu, Higashiyama Tetsuya, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" } ], "reference": [ { "type": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "crossref": [ { "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "RACMRRGKYIRTCSFERKLC", "down_seq": "CSISDIK", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Compromised interaction with PRK6. Reduced pollen tube attraction.", "evidence": [ { "database": "UniProtKB", "id": "Q4VP08", "url": "https://www.uniprot.org/uniprotkb/Q4VP08" }, { "database": "PubMed", "id": "29109411", "url": "https://glygen.org/publication/PubMed/29109411" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "23", "end_pos": "23" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "67", "end_pos": "67" }, { "start_pos": "68", "end_pos": "68" }, { "start_pos": "70", "end_pos": "70" }, { "start_pos": "73", "end_pos": "73" }, { "start_pos": "79", "end_pos": "79" }, { "start_pos": "83", "end_pos": "83" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q4VP08-1.67.67", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q4VP08-1.68.68", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q4VP08-1.70.70", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q4VP08-1.73.73", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q4VP08-1.79.79", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56WH1-1.216.216", "start_pos": 216, "end_pos": 216, "uniprot_canonical_ac": "Q56WH1-1", "length": 450, "uniprot_id": "TBA3_ARATH", "protein_name": "Tubulin alpha-3 chain", "refseq_ac": "NP_197478", "refseq_name": "tubulin alpha-3", "gene_name": "TUBA3", "gene_names_uniprotkb": "TUBA3; T29J13.190; TUA3", "gene_names_refseq": "T29J13.190; T29J13_190; TUA3; tubulin alpha-3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56WH1", "url": "https://www.uniprot.org/uniprotkb/Q56WH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EHTDVAVLLDNEAIYDICRR", "down_seq": "LDIERPTYTNLNRLISQIIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser216" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" }, { "start_pos": "349", "end_pos": "349" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q56WH1-1.349.349", "start_pos": 349, "end_pos": 349, "uniprot_canonical_ac": "Q56WH1-1", "length": 450, "uniprot_id": "TBA3_ARATH", "protein_name": "Tubulin alpha-3 chain", "refseq_ac": "NP_197478", "refseq_name": "tubulin alpha-3", "gene_name": "TUBA3", "gene_names_uniprotkb": "TUBA3; T29J13.190; TUA3", "gene_names_refseq": "T29J13.190; T29J13_190; TUA3; tubulin alpha-3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56WH1", "url": "https://www.uniprot.org/uniprotkb/Q56WH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q56WH1", "url": "https://www.uniprot.org/uniprotkb/Q56WH1" }, { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.", "journal": "Proteomics", "date": "2009-03", "authors": "Li Hao, Wong Wai Shing, Zhu Lin, Guo Hong Wei, Ecker Joseph, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots.", "journal": "Plant physiology", "date": "2012-05", "authors": "Lan Ping, Li Wenfeng, Wen Tuan-Nan, Schmidt Wolfgang", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] }, { "title": "\u03b1-tubulin is rapidly phosphorylated in response to hyperosmotic stress in rice and Arabidopsis.", "journal": "Plant & cell physiology", "date": "2013-06", "authors": "Ban Yoshinori, Kobayashi Yuhko, Hara Tomomi, Hamada Takahiro, Hashimoto Takashi, Takeda Shin, Hattori Tsukaho", "evidence": [ { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" } ], "reference": [ { "type": "PubMed", "id": "23628996", "url": "https://glygen.org/publication/PubMed/23628996" } ] } ], "crossref": [ { "id": "Q56WH1", "url": "https://www.uniprot.org/uniprotkb/Q56WH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23628996", "url": "https://glygen.org/publication/PubMed/23628996", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NAAVGTIKTKRTVQFVDWCP", "down_seq": "GFKCGINYQPPTVVPGGDLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q56WH1", "url": "https://www.uniprot.org/uniprotkb/Q56WH1" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q56WH1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q56WH1" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19253305", "url": "https://glygen.org/publication/PubMed/19253305" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "22438062", "url": "https://glygen.org/publication/PubMed/22438062" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "PubMed", "id": "23628996", "url": "https://glygen.org/publication/PubMed/23628996" } ], "site_lbl": "Thr349" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" }, { "start_pos": "349", "end_pos": "349" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q66GI4-1.399.399", "start_pos": 399, "end_pos": 399, "uniprot_canonical_ac": "Q66GI4-1", "length": 572, "uniprot_id": "PRRP1_ARATH", "protein_name": "Proteinaceous RNase P 1, chloroplastic/mitochondrial", "refseq_ac": "NP_001324632", "refseq_name": "proteinaceous RNase P 1", "gene_name": "PRORP1", "gene_names_uniprotkb": "PRORP1; F22D22.2", "gene_names_refseq": "F22D22.2; F22D22_2; PRORP1; proteinaceous RNase P 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012", "authors": "Howard MJ, Lim WH, Fierke CA, Koutmos M", "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" } ], "reference": [ { "type": "PubMed", "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464" } ] } ], "crossref": [ { "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "ANFNQFQEWLERHGPFDAVI", "down_seq": "GANMGLVNQRSFSFFQLNNT", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "Abolishes ribonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" }, { "database": "PubMed", "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "474", "end_pos": "475" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q66GI4-1.474.474", "start_pos": 474, "end_pos": 474, "uniprot_canonical_ac": "Q66GI4-1", "length": 572, "uniprot_id": "PRRP1_ARATH", "protein_name": "Proteinaceous RNase P 1, chloroplastic/mitochondrial", "refseq_ac": "NP_001324632", "refseq_name": "proteinaceous RNase P 1", "gene_name": "PRORP1", "gene_names_uniprotkb": "PRORP1; F22D22.2", "gene_names_refseq": "F22D22.2; F22D22_2; PRORP1; proteinaceous RNase P 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012", "authors": "Howard MJ, Lim WH, Fierke CA, Koutmos M", "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" } ], "reference": [ { "type": "PubMed", "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464" } ] } ], "crossref": [ { "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "ALLEKWKNAGALYATPPGSN", "down_seq": "DWYWLYAAVSCKCLLVTNDE", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "Abolishes ribonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" }, { "database": "PubMed", "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "474", "end_pos": "475" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "upstream", "id": "Q66GI4-1.474.475", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q66GI4-1.475.475", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q66GI4-1.493.493", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q66GI4-1.474.475", "start_pos": 474, "end_pos": 475, "uniprot_canonical_ac": "Q66GI4-1", "length": 572, "uniprot_id": "PRRP1_ARATH", "protein_name": "Proteinaceous RNase P 1, chloroplastic/mitochondrial", "refseq_ac": "NP_001324632", "refseq_name": "proteinaceous RNase P 1", "gene_name": "PRORP1", "gene_names_uniprotkb": "PRORP1; F22D22.2", "gene_names_refseq": "F22D22.2; F22D22_2; PRORP1; proteinaceous RNase P 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A single Arabidopsis organellar protein has RNase P activity.", "journal": "Nature structural & molecular biology", "date": "2010-06", "authors": "Gobert Anthony, Gutmann Bernard, Taschner Andreas, G\u00f6ssringer Markus, Holzmann Johann, Hartmann Roland K, Rossmanith Walter, Gieg\u00e9 Philippe", "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" } ], "reference": [ { "type": "PubMed", "id": "20473316", "url": "https://glygen.org/publication/PubMed/20473316" } ] } ], "crossref": [ { "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20473316", "url": "https://glygen.org/publication/PubMed/20473316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "DD", "start_aa": "D", "up_seq": "ALLEKWKNAGALYATPPGSN", "down_seq": "WYWLYAAVSCKCLLVTNDEM", "mutagenesis": [ { "sequence_org": "DD", "sequence_mut": "AA", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" }, { "database": "PubMed", "id": "20473316", "url": "https://glygen.org/publication/PubMed/20473316" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "474", "end_pos": "475" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 0, "direction": "downstream", "id": "Q66GI4-1.474.474", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "upstream", "id": "Q66GI4-1.475.475", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q66GI4-1.493.493", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q66GI4-1.475.475", "start_pos": 475, "end_pos": 475, "uniprot_canonical_ac": "Q66GI4-1", "length": 572, "uniprot_id": "PRRP1_ARATH", "protein_name": "Proteinaceous RNase P 1, chloroplastic/mitochondrial", "refseq_ac": "NP_001324632", "refseq_name": "proteinaceous RNase P 1", "gene_name": "PRORP1", "gene_names_uniprotkb": "PRORP1; F22D22.2", "gene_names_refseq": "F22D22.2; F22D22_2; PRORP1; proteinaceous RNase P 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012", "authors": "Howard MJ, Lim WH, Fierke CA, Koutmos M", "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" } ], "reference": [ { "type": "PubMed", "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464" } ] } ], "crossref": [ { "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "LLEKWKNAGALYATPPGSND", "down_seq": "WYWLYAAVSCKCLLVTNDEM", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "Abolishes ribonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" }, { "database": "PubMed", "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "474", "end_pos": "475" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q66GI4-1.474.474", "categories": [ "mutagenesis_flag" ] }, { "distance": 0, "direction": "downstream", "id": "Q66GI4-1.474.475", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q66GI4-1.493.493", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q66GI4-1.493.493", "start_pos": 493, "end_pos": 493, "uniprot_canonical_ac": "Q66GI4-1", "length": 572, "uniprot_id": "PRRP1_ARATH", "protein_name": "Proteinaceous RNase P 1, chloroplastic/mitochondrial", "refseq_ac": "NP_001324632", "refseq_name": "proteinaceous RNase P 1", "gene_name": "PRORP1", "gene_names_uniprotkb": "PRORP1; F22D22.2", "gene_names_refseq": "F22D22.2; F22D22_2; PRORP1; proteinaceous RNase P 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012", "authors": "Howard MJ, Lim WH, Fierke CA, Koutmos M", "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" } ], "reference": [ { "type": "PubMed", "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464" } ] } ], "crossref": [ { "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "NDDWYWLYAAVSCKCLLVTN", "down_seq": "EMRDHLFQLLGNSFFPRWKE", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "N", "comment": "Abolishes ribonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q66GI4", "url": "https://www.uniprot.org/uniprotkb/Q66GI4" }, { "database": "PubMed", "id": "22991464", "url": "https://glygen.org/publication/PubMed/22991464" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "399", "end_pos": "399" }, { "start_pos": "474", "end_pos": "474" }, { "start_pos": "474", "end_pos": "475" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "493", "end_pos": "493" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q66GI4-1.474.474", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q66GI4-1.474.475", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q66GI4-1.475.475", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6DBH0-1.13.13", "start_pos": 13, "end_pos": 13, "uniprot_canonical_ac": "Q6DBH0-1", "length": 444, "uniprot_id": "APD2_ARATH", "protein_name": "E3 ubiquitin-protein ligase APD2", "refseq_ac": "NP_195765", "refseq_name": "RING/U-box superfamily protein", "gene_name": "APD2", "gene_names_uniprotkb": "APD2; T10O8.160", "gene_names_refseq": "ABERRANT POLLEN DEVELOPMENT 2; APD2; T10O8.160; T10O8_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6DBH0", "url": "https://www.uniprot.org/uniprotkb/Q6DBH0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MSLPDSLPSSSS", "down_seq": "PPVTREETGFHRFEHHGNDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0" } ], "site_lbl": "Ser13" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "240", "end_pos": "240" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6DBH0-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "Q6DBH0-1", "length": 444, "uniprot_id": "APD2_ARATH", "protein_name": "E3 ubiquitin-protein ligase APD2", "refseq_ac": "NP_195765", "refseq_name": "RING/U-box superfamily protein", "gene_name": "APD2", "gene_names_uniprotkb": "APD2; T10O8.160", "gene_names_refseq": "ABERRANT POLLEN DEVELOPMENT 2; APD2; T10O8.160; T10O8_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6DBH0", "url": "https://www.uniprot.org/uniprotkb/Q6DBH0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TTLSWHIISDSGYIEQDITK", "down_seq": "SSYYVAVGNVYLNEVKATID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser229" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "240", "end_pos": "240" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q6DBH0-1.230.230", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q6DBH0-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6DBH0-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q6DBH0-1", "length": 444, "uniprot_id": "APD2_ARATH", "protein_name": "E3 ubiquitin-protein ligase APD2", "refseq_ac": "NP_195765", "refseq_name": "RING/U-box superfamily protein", "gene_name": "APD2", "gene_names_uniprotkb": "APD2; T10O8.160", "gene_names_refseq": "ABERRANT POLLEN DEVELOPMENT 2; APD2; T10O8.160; T10O8_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6DBH0", "url": "https://www.uniprot.org/uniprotkb/Q6DBH0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TLSWHIISDSGYIEQDITKS", "down_seq": "SYYVAVGNVYLNEVKATIDI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser230" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "240", "end_pos": "240" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q6DBH0-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q6DBH0-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6DBH0-1.240.240", "start_pos": 240, "end_pos": 240, "uniprot_canonical_ac": "Q6DBH0-1", "length": 444, "uniprot_id": "APD2_ARATH", "protein_name": "E3 ubiquitin-protein ligase APD2", "refseq_ac": "NP_195765", "refseq_name": "RING/U-box superfamily protein", "gene_name": "APD2", "gene_names_uniprotkb": "APD2; T10O8.160", "gene_names_refseq": "ABERRANT POLLEN DEVELOPMENT 2; APD2; T10O8.160; T10O8_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6DBH0", "url": "https://www.uniprot.org/uniprotkb/Q6DBH0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GYIEQDITKSSSYYVAVGNV", "down_seq": "LNEVKATIDIQVEGVLYDTT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6DBH0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6DBH0" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Tyr240" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "13", "end_pos": "13" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "240", "end_pos": "240" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q6DBH0-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q6DBH0-1.230.230", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.347.347", "start_pos": 347, "end_pos": 347, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q6EVK6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6EVK6" }, { "database": "O-GlcNAc Atlas", "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ANSASDISGQSGSAKARHAL", "down_seq": "TGSFASTSSPRMVNPAMNPF", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser347", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q6EVK6", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.348.348", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q6EVK6-1.350.350", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q6EVK6-1.353.353", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q6EVK6-1.354.354", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q6EVK6-1.355.355", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q6EVK6-1.356.356", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.348.348", "start_pos": 348, "end_pos": 348, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q6EVK6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6EVK6" }, { "database": "O-GlcNAc Atlas", "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NSASDISGQSGSAKARHALS", "down_seq": "GSFASTSSPRMVNPAMNPFS", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr348", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q6EVK6", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.347.347", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6EVK6-1.350.350", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q6EVK6-1.353.353", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q6EVK6-1.354.354", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q6EVK6-1.355.355", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q6EVK6-1.356.356", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.350.350", "start_pos": 350, "end_pos": 350, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q6EVK6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6EVK6" }, { "database": "O-GlcNAc Atlas", "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASDISGQSGSAKARHALSTG", "down_seq": "FASTSSPRMVNPAMNPFSGQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser350", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q6EVK6", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q6EVK6-1.347.347", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6EVK6-1.348.348", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q6EVK6-1.353.353", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6EVK6-1.354.354", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q6EVK6-1.355.355", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q6EVK6-1.356.356", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.353.353", "start_pos": 353, "end_pos": 353, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q6EVK6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6EVK6" }, { "database": "O-GlcNAc Atlas", "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ISGQSGSAKARHALSTGSFA", "down_seq": "TSSPRMVNPAMNPFSGQGRE", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser353", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q6EVK6", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser353" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q6EVK6-1.347.347", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q6EVK6-1.348.348", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q6EVK6-1.350.350", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.354.354", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6EVK6-1.355.355", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q6EVK6-1.356.356", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.354.354", "start_pos": 354, "end_pos": 354, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q6EVK6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6EVK6" }, { "database": "O-GlcNAc Atlas", "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SGQSGSAKARHALSTGSFAS", "down_seq": "SSPRMVNPAMNPFSGQGREN", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr354", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q6EVK6", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr354" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q6EVK6-1.347.347", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q6EVK6-1.348.348", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q6EVK6-1.350.350", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.353.353", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.355.355", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6EVK6-1.356.356", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.413.413", "start_pos": 413, "end_pos": 413, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q6EVK6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6EVK6" }, { "database": "O-GlcNAc Atlas", "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLQTSANETPVLDQNASTKK", "down_seq": "LGPAEHLQMQQPRQLNTPTP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser413", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q6EVK6", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q6EVK6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6EVK6" }, { "database": "O-GlcNAc Atlas", "id": "Q6EVK6", "url": "https://oglcnac.org/atlas/detail/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6EVK6", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6EVK6", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q6EVK6", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q6EVK6" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1138.1138", "start_pos": 1138, "end_pos": 1138, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis BRAHMA chromatin-remodeling ATPase is involved in repression of seed maturation genes in leaves.", "journal": "Plant physiology", "date": "2008-07", "authors": "Tang Xurong, Hou Anfu, Babu Mohan, Nguyen Vi, Hurtado Lidia, Lu Qing, Reyes Jose C, Wang Aiming, Keller Wilfred A, Harada John J, Tsang Edward W T, Cui Yuhai", "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "18508955", "url": "https://glygen.org/publication/PubMed/18508955" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18508955", "url": "https://glygen.org/publication/PubMed/18508955", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "ESVLARDLDRYRCQRRLLLT", "down_seq": "TPLQNDLKELWSLLNLLLPD", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "R", "comment": "In brm-5/essp3; ectopic expression of seed storage proteins in leaves.", "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" }, { "database": "PubMed", "id": "18508955", "url": "https://glygen.org/publication/PubMed/18508955" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1331.1331", "start_pos": 1331, "end_pos": 1331, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "WILDRILIKLQRTGHRVLLF", "down_seq": "TMTKLLDILEEYLQWRRLVY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Ser1331" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.1332.1332", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1332.1332", "start_pos": 1332, "end_pos": 1332, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ILDRILIKLQRTGHRVLLFS", "down_seq": "MTKLLDILEEYLQWRRLVYR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Thr1332" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.1331.1331", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1453.1453", "start_pos": 1453, "end_pos": 1453, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAVVEKLSSHQKEDELRSGG", "down_seq": "VDLEDDMAGKDRYIGSIEGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1453" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1594.1594", "start_pos": 1594, "end_pos": 1594, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVNATVADLSKKPSKNMLSS", "down_seq": "NLIVQPGGPGGERKRGRPKS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Ser1594" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1630.1630", "start_pos": 1630, "end_pos": 1630, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GRPKSKKINYKEIEDDIAGY", "down_seq": "EESSEERNIDSGNEEEGDIR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1630" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q6EVK6-1.1633.1633", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6EVK6-1.1634.1634", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q6EVK6-1.1641.1641", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1633.1633", "start_pos": 1633, "end_pos": 1633, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KSKKINYKEIEDDIAGYSEE", "down_seq": "SEERNIDSGNEEEGDIRQFD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1633" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q6EVK6-1.1630.1630", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.1634.1634", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q6EVK6-1.1641.1641", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1634.1634", "start_pos": 1634, "end_pos": 1634, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKKINYKEIEDDIAGYSEES", "down_seq": "EERNIDSGNEEEGDIRQFDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1634" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q6EVK6-1.1630.1630", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.1633.1633", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q6EVK6-1.1641.1641", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1641.1641", "start_pos": 1641, "end_pos": 1641, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" }, { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" }, { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EIEDDIAGYSEESSEERNID", "down_seq": "GNEEEGDIRQFDDDELTGAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1641" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q6EVK6-1.1630.1630", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q6EVK6-1.1633.1633", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q6EVK6-1.1634.1634", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q6EVK6-1.1658.1658", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1658.1658", "start_pos": 1658, "end_pos": 1658, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NIDSGNEEEGDIRQFDDDEL", "down_seq": "GALGDHQTNKGEFDGENPVC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr1658" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q6EVK6-1.1641.1641", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1704.1704", "start_pos": 1704, "end_pos": 1704, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PGSGSYKKNPPRDDAGSSGS", "down_seq": "PESHRSKEMASPVSSQKFGS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1704" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q6EVK6-1.1715.1715", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q6EVK6-1.1718.1718", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q6EVK6-1.1719.1719", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q6EVK6-1.1724.1724", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1715.1715", "start_pos": 1715, "end_pos": 1715, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RDDAGSSGSSPESHRSKEMA", "down_seq": "PVSSQKFGSLSALDTRPGSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1715" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q6EVK6-1.1704.1704", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q6EVK6-1.1718.1718", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6EVK6-1.1719.1719", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q6EVK6-1.1724.1724", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q6EVK6-1.1734.1734", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1718.1718", "start_pos": 1718, "end_pos": 1718, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGSSGSSPESHRSKEMASPV", "down_seq": "SQKFGSLSALDTRPGSVSKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1718" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q6EVK6-1.1704.1704", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q6EVK6-1.1715.1715", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.1719.1719", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q6EVK6-1.1724.1724", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q6EVK6-1.1734.1734", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q6EVK6-1.1736.1736", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1719.1719", "start_pos": 1719, "end_pos": 1719, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GSSGSSPESHRSKEMASPVS", "down_seq": "QKFGSLSALDTRPGSVSKRL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1719" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q6EVK6-1.1704.1704", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q6EVK6-1.1715.1715", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.1718.1718", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q6EVK6-1.1724.1724", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q6EVK6-1.1734.1734", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q6EVK6-1.1736.1736", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1724.1724", "start_pos": 1724, "end_pos": 1724, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPESHRSKEMASPVSSQKFG", "down_seq": "LSALDTRPGSVSKRLLDDLE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser1724" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q6EVK6-1.1704.1704", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q6EVK6-1.1715.1715", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q6EVK6-1.1718.1718", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q6EVK6-1.1719.1719", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q6EVK6-1.1734.1734", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q6EVK6-1.1736.1736", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1734.1734", "start_pos": 1734, "end_pos": 1734, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASPVSSQKFGSLSALDTRPG", "down_seq": "VSKRLLDDLEEGEIAASGDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1734" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q6EVK6-1.1715.1715", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q6EVK6-1.1718.1718", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q6EVK6-1.1719.1719", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q6EVK6-1.1724.1724", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6EVK6-1.1736.1736", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1736.1736", "start_pos": 1736, "end_pos": 1736, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PVSSQKFGSLSALDTRPGSV", "down_seq": "KRLLDDLEEGEIAASGDSHI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1736" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q6EVK6-1.1718.1718", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q6EVK6-1.1719.1719", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q6EVK6-1.1724.1724", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6EVK6-1.1734.1734", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1761.1761", "start_pos": 1761, "end_pos": 1761, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DDLEEGEIAASGDSHIDLQR", "down_seq": "GSWAHDRDEGDEEQVLQPTI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1761" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q6EVK6-1.1763.1763", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1763.1763", "start_pos": 1763, "end_pos": 1763, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEEGEIAASGDSHIDLQRSG", "down_seq": "WAHDRDEGDEEQVLQPTIKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1763" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q6EVK6-1.1761.1761", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1857.1857", "start_pos": 1857, "end_pos": 1857, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SRLRSVPAKKVASTSKLHVS", "down_seq": "PKSGRLNATQLTVEDNAEAS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1857" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1884.1884", "start_pos": 1884, "end_pos": 1884, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NATQLTVEDNAEASRETWDG", "down_seq": "SPISSSNAGARMSHIIQKRC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr1884" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.1885.1885", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6EVK6-1.1888.1888", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q6EVK6-1.1890.1890", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1885.1885", "start_pos": 1885, "end_pos": 1885, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATQLTVEDNAEASRETWDGT", "down_seq": "PISSSNAGARMSHIIQKRCK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser1885" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.1884.1884", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q6EVK6-1.1888.1888", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q6EVK6-1.1890.1890", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1888.1888", "start_pos": 1888, "end_pos": 1888, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTVEDNAEASRETWDGTSPI", "down_seq": "SSNAGARMSHIIQKRCKIVI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser1888" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q6EVK6-1.1884.1884", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q6EVK6-1.1885.1885", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6EVK6-1.1890.1890", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.1890.1890", "start_pos": 1890, "end_pos": 1890, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VEDNAEASRETWDGTSPISS", "down_seq": "NAGARMSHIIQKRCKIVISK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser1890" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q6EVK6-1.1884.1884", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q6EVK6-1.1885.1885", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6EVK6-1.1888.1888", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2029.2029", "start_pos": 2029, "end_pos": 2029, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TDFREARNALSFSGSAPTLV", "down_seq": "TPTPRGAGISQGKRQKLVNE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser2029" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.2030.2030", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2030.2030", "start_pos": 2030, "end_pos": 2030, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DFREARNALSFSGSAPTLVS", "down_seq": "PTPRGAGISQGKRQKLVNEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr2030" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.2029.2029", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2052.2052", "start_pos": 2052, "end_pos": 2052, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TPRGAGISQGKRQKLVNEPE", "down_seq": "EPSSPQRSQQRENSRIRVQI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr2052" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q6EVK6-1.2055.2055", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6EVK6-1.2056.2056", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q6EVK6-1.2060.2060", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2055.2055", "start_pos": 2055, "end_pos": 2055, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GAGISQGKRQKLVNEPETEP", "down_seq": "SPQRSQQRENSRIRVQIPQK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser2055" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q6EVK6-1.2052.2052", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.2056.2056", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q6EVK6-1.2060.2060", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2056.2056", "start_pos": 2056, "end_pos": 2056, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" }, { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AGISQGKRQKLVNEPETEPS", "down_seq": "PQRSQQRENSRIRVQIPQKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser2056" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q6EVK6-1.2052.2052", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.2055.2055", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6EVK6-1.2060.2060", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2060.2060", "start_pos": 2060, "end_pos": 2060, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QGKRQKLVNEPETEPSSPQR", "down_seq": "QQRENSRIRVQIPQKETKLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser2060" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q6EVK6-1.2052.2052", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q6EVK6-1.2055.2055", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q6EVK6-1.2056.2056", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2089.2089", "start_pos": 2089, "end_pos": 2089, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RVQIPQKETKLGGTTSHTDE", "down_seq": "PILAHPGELVICKKKRKDRE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser2089" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2117.2117", "start_pos": 2117, "end_pos": 2117, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ELVICKKKRKDREKSGPKTR", "down_seq": "GGSSSPVSPPPAMIGRGLRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr2117" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q6EVK6-1.2120.2120", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6EVK6-1.2121.2121", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q6EVK6-1.2122.2122", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q6EVK6-1.2125.2125", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q6EVK6-1.2137.2137", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2120.2120", "start_pos": 2120, "end_pos": 2120, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ICKKKRKDREKSGPKTRTGG", "down_seq": "SSPVSPPPAMIGRGLRSPVS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser2120" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q6EVK6-1.2117.2117", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.2121.2121", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q6EVK6-1.2122.2122", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q6EVK6-1.2125.2125", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q6EVK6-1.2137.2137", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q6EVK6-1.2140.2140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2121.2121", "start_pos": 2121, "end_pos": 2121, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CKKKRKDREKSGPKTRTGGS", "down_seq": "SPVSPPPAMIGRGLRSPVSG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser2121" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q6EVK6-1.2117.2117", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.2120.2120", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.2122.2122", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q6EVK6-1.2125.2125", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q6EVK6-1.2137.2137", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q6EVK6-1.2140.2140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2122.2122", "start_pos": 2122, "end_pos": 2122, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKKRKDREKSGPKTRTGGSS", "down_seq": "PVSPPPAMIGRGLRSPVSGG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser2122" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q6EVK6-1.2117.2117", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6EVK6-1.2120.2120", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.2121.2121", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q6EVK6-1.2125.2125", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q6EVK6-1.2137.2137", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q6EVK6-1.2140.2140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2125.2125", "start_pos": 2125, "end_pos": 2125, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RKDREKSGPKTRTGGSSSPV", "down_seq": "PPPAMIGRGLRSPVSGGVPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser2125" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q6EVK6-1.2117.2117", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q6EVK6-1.2120.2120", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q6EVK6-1.2121.2121", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q6EVK6-1.2122.2122", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q6EVK6-1.2137.2137", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q6EVK6-1.2140.2140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2137.2137", "start_pos": 2137, "end_pos": 2137, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" }, { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" }, { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGGSSSPVSPPPAMIGRGLR", "down_seq": "PVSGGVPRETRLAQQQRWPN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser2137" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q6EVK6-1.2117.2117", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q6EVK6-1.2120.2120", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q6EVK6-1.2121.2121", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q6EVK6-1.2122.2122", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q6EVK6-1.2125.2125", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q6EVK6-1.2140.2140", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.2140.2140", "start_pos": 2140, "end_pos": 2140, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSSPVSPPPAMIGRGLRSPV", "down_seq": "GGVPRETRLAQQQRWPNQPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser2140" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q6EVK6-1.2120.2120", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "downstream", "id": "Q6EVK6-1.2121.2121", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "downstream", "id": "Q6EVK6-1.2122.2122", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q6EVK6-1.2125.2125", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q6EVK6-1.2137.2137", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.355.355", "start_pos": 355, "end_pos": 355, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GQSGSAKARHALSTGSFAST", "down_seq": "SPRMVNPAMNPFSGQGRENP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser355" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q6EVK6-1.347.347", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q6EVK6-1.348.348", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q6EVK6-1.350.350", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6EVK6-1.353.353", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.354.354", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.356.356", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.356.356", "start_pos": 356, "end_pos": 356, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QSGSAKARHALSTGSFASTS", "down_seq": "PRMVNPAMNPFSGQGRENPM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser356" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q6EVK6-1.347.347", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q6EVK6-1.348.348", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q6EVK6-1.350.350", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q6EVK6-1.353.353", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q6EVK6-1.354.354", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.355.355", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.511.511", "start_pos": 511, "end_pos": 511, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PELLQAISPPPLELQTQRQI", "down_seq": "PAIGKVQDRSSDKTGEDQAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser511" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.544.544", "start_pos": 544, "end_pos": 544, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KTGEDQARSLECGKESQAAA", "down_seq": "SNGPIFSKEEDNVGDTEVAL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser544" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q6EVK6-1.545.545", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.545.545", "start_pos": 545, "end_pos": 545, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGEDQARSLECGKESQAAAS", "down_seq": "NGPIFSKEEDNVGDTEVALT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser545" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q6EVK6-1.544.544", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.581.581", "start_pos": 581, "end_pos": 581, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EVALTTGHSQLFQNLGKEAT", "down_seq": "TDVATKEEQQTDVFPVKSDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser581" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.628.628", "start_pos": 628, "end_pos": 628, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKNPRSDSTADKGKAVASDG", "down_seq": "QSKVPPQANSPQPPKDTASA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser628" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q6EVK6-1.638.638", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6EVK6-1.638.638", "start_pos": 638, "end_pos": 638, "uniprot_canonical_ac": "Q6EVK6-1", "length": 2193, "uniprot_id": "BRM_ARATH", "protein_name": "Chromatin remodeling ATPase BRAHMA", "refseq_ac": "NP_001318432", "refseq_name": "transcription regulatory protein SNF2", "gene_name": "BRM", "gene_names_uniprotkb": "BRM; CHR2; F4I18; T3F17.33", "gene_names_refseq": "ARABIDOPSIS THALIANA BRAHMA; ATBRM; BRAHMA; BRM; CHA2; CHR2; CHROMATIN REMODELING 2; T3F17.33", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6EVK6", "url": "https://www.uniprot.org/uniprotkb/Q6EVK6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DKGKAVASDGSQSKVPPQAN", "down_seq": "PQPPKDTASARKYYGPLFDF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6EVK6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6EVK6" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser638" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "347", "end_pos": "347" }, { "start_pos": "348", "end_pos": "348" }, { "start_pos": "350", "end_pos": "350" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "413", "end_pos": "413" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1138", "end_pos": "1138" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "1331", "end_pos": "1331" }, { "start_pos": "1332", "end_pos": "1332" }, { "start_pos": "1453", "end_pos": "1453" }, { "start_pos": "1594", "end_pos": "1594" }, { "start_pos": "1630", "end_pos": "1630" }, { "start_pos": "1633", "end_pos": "1633" }, { "start_pos": "1634", "end_pos": "1634" }, { "start_pos": "1641", "end_pos": "1641" }, { "start_pos": "1658", "end_pos": "1658" }, { "start_pos": "1704", "end_pos": "1704" }, { "start_pos": "1715", "end_pos": "1715" }, { "start_pos": "1718", "end_pos": "1718" }, { "start_pos": "1719", "end_pos": "1719" }, { "start_pos": "1724", "end_pos": "1724" }, { "start_pos": "1734", "end_pos": "1734" }, { "start_pos": "1736", "end_pos": "1736" }, { "start_pos": "1761", "end_pos": "1761" }, { "start_pos": "1763", "end_pos": "1763" }, { "start_pos": "1857", "end_pos": "1857" }, { "start_pos": "1884", "end_pos": "1884" }, { "start_pos": "1885", "end_pos": "1885" }, { "start_pos": "1888", "end_pos": "1888" }, { "start_pos": "1890", "end_pos": "1890" }, { "start_pos": "2029", "end_pos": "2029" }, { "start_pos": "2030", "end_pos": "2030" }, { "start_pos": "2052", "end_pos": "2052" }, { "start_pos": "2055", "end_pos": "2055" }, { "start_pos": "2056", "end_pos": "2056" }, { "start_pos": "2060", "end_pos": "2060" }, { "start_pos": "2089", "end_pos": "2089" }, { "start_pos": "2117", "end_pos": "2117" }, { "start_pos": "2120", "end_pos": "2120" }, { "start_pos": "2121", "end_pos": "2121" }, { "start_pos": "2122", "end_pos": "2122" }, { "start_pos": "2125", "end_pos": "2125" }, { "start_pos": "2137", "end_pos": "2137" }, { "start_pos": "2140", "end_pos": "2140" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "354", "end_pos": "354" }, { "start_pos": "355", "end_pos": "355" }, { "start_pos": "356", "end_pos": "356" }, { "start_pos": "511", "end_pos": "511" }, { "start_pos": "544", "end_pos": "544" }, { "start_pos": "545", "end_pos": "545" }, { "start_pos": "581", "end_pos": "581" }, { "start_pos": "628", "end_pos": "628" }, { "start_pos": "638", "end_pos": "638" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q6EVK6-1.628.628", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q6R2K3-1.179.179", "start_pos": 179, "end_pos": 179, "uniprot_canonical_ac": "Q6R2K3-1", "length": 776, "uniprot_id": "SRF3_ARATH", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 3", "refseq_ac": "NP_001329389", "refseq_name": "STRUBBELIG-receptor family 3", "gene_name": "SRF3", "gene_names_uniprotkb": "SRF3; F4C21.35", "gene_names_refseq": "F4C21.35; F4C21_35; SRF3; STRUBBELIG-receptor family 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ELPDVFQNLVGLINLDISSN", "down_seq": "ISGTLPPSMENLLTLTTLRV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn179", "evidence": [ { "id": "Q6R2K3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6R2K3-1.248.248", "start_pos": 248, "end_pos": 248, "uniprot_canonical_ac": "Q6R2K3-1", "length": 776, "uniprot_id": "SRF3_ARATH", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 3", "refseq_ac": "NP_001329389", "refseq_name": "STRUBBELIG-receptor family 3", "gene_name": "SRF3", "gene_names_uniprotkb": "SRF3; F4C21.35", "gene_names_refseq": "F4C21.35; F4C21_35; SRF3; STRUBBELIG-receptor family 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GPIPDKLLSIPKFLHEGNPF", "down_seq": "ATMINSTSTAPSLSPSLSPT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn248", "evidence": [ { "id": "Q6R2K3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q6R2K3-1.253.253", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6R2K3-1.253.253", "start_pos": 253, "end_pos": 253, "uniprot_canonical_ac": "Q6R2K3-1", "length": 776, "uniprot_id": "SRF3_ARATH", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 3", "refseq_ac": "NP_001329389", "refseq_name": "STRUBBELIG-receptor family 3", "gene_name": "SRF3", "gene_names_uniprotkb": "SRF3; F4C21.35", "gene_names_refseq": "F4C21.35; F4C21_35; SRF3; STRUBBELIG-receptor family 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KLLSIPKFLHEGNPFNATMI", "down_seq": "STSTAPSLSPSLSPTKPAPT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn253", "evidence": [ { "id": "Q6R2K3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q6R2K3-1.248.248", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6R2K3-1.310.310", "start_pos": 310, "end_pos": 310, "uniprot_canonical_ac": "Q6R2K3-1", "length": 776, "uniprot_id": "SRF3_ARATH", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 3", "refseq_ac": "NP_001329389", "refseq_name": "STRUBBELIG-receptor family 3", "gene_name": "SRF3", "gene_names_uniprotkb": "SRF3; F4C21.35", "gene_names_refseq": "F4C21.35; F4C21_35; SRF3; STRUBBELIG-receptor family 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KVADGPSDSEGSSSENSKGK", "down_seq": "SSHTKKIILIAFAGVLVFII", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn310", "evidence": [ { "id": "Q6R2K3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6R2K3-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "Q6R2K3-1", "length": 776, "uniprot_id": "SRF3_ARATH", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 3", "refseq_ac": "NP_001329389", "refseq_name": "STRUBBELIG-receptor family 3", "gene_name": "SRF3", "gene_names_uniprotkb": "SRF3; F4C21.35", "gene_names_refseq": "F4C21.35; F4C21_35; SRF3; STRUBBELIG-receptor family 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PGWIASGGDPCGEAWQGIIC", "down_seq": "VSDIISITVNAANLQGELGD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn72", "evidence": [ { "id": "Q6R2K3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q6R2K3-1.452.452", "start_pos": 452, "end_pos": 452, "uniprot_canonical_ac": "Q6R2K3-1", "length": 776, "uniprot_id": "SRF3_ARATH", "protein_name": "Protein STRUBBELIG-RECEPTOR FAMILY 3", "refseq_ac": "NP_001329389", "refseq_name": "STRUBBELIG-receptor family 3", "gene_name": "SRF3", "gene_names_uniprotkb": "SRF3; F4C21.35", "gene_names_refseq": "F4C21.35; F4C21_35; SRF3; STRUBBELIG-receptor family 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q6R2K3", "url": "https://www.uniprot.org/uniprotkb/Q6R2K3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q6R2K3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R2K3" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q6R2K3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R2K3" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q6R2K3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R2K3" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q6R2K3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R2K3" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q6R2K3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R2K3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q6R2K3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R2K3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPPPPPPPPLDEKVTVMPII", "down_seq": "PERPVKKTSPKRLPLTSVKH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q6R2K3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q6R2K3" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser452" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "179", "end_pos": "179" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "253", "end_pos": "253" }, { "start_pos": "310", "end_pos": "310" }, { "start_pos": "72", "end_pos": "72" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "452", "end_pos": "452" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q700D2-1.443.443", "start_pos": 443, "end_pos": 443, "uniprot_canonical_ac": "Q700D2-1", "length": 503, "uniprot_id": "IDD10_ARATH", "protein_name": "Zinc finger protein JACKDAW", "refseq_ac": "NP_195935", "refseq_name": "C2H2-like zinc finger protein", "gene_name": "JKD", "gene_names_uniprotkb": "JKD; F15A17.180; IDD10; IDZ3; MOK16.6", "gene_names_refseq": "F15A17.180; F15A17_180; JACKDAW; JKD", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q700D2", "url": "https://www.uniprot.org/uniprotkb/Q700D2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q700D2", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q700D2" }, { "database": "O-GlcNAc Atlas", "id": "Q700D2", "url": "https://oglcnac.org/atlas/detail/Q700D2" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q700D2", "url": "https://oglcnac.org/atlas/detail/Q700D2", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LNNFNTNVLRENHNRAPPPL", "down_seq": "GVSTSSVDNNPFQSNRSGLN", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser443", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q700D2", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q700D2" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "443", "end_pos": "443" }, { "start_pos": "446", "end_pos": "446" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q700D2-1.446.446", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q700D2-1.446.446", "start_pos": 446, "end_pos": 446, "uniprot_canonical_ac": "Q700D2-1", "length": 503, "uniprot_id": "IDD10_ARATH", "protein_name": "Zinc finger protein JACKDAW", "refseq_ac": "NP_195935", "refseq_name": "C2H2-like zinc finger protein", "gene_name": "JKD", "gene_names_uniprotkb": "JKD; F15A17.180; IDD10; IDZ3; MOK16.6", "gene_names_refseq": "F15A17.180; F15A17_180; JACKDAW; JKD", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q700D2", "url": "https://www.uniprot.org/uniprotkb/Q700D2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q700D2", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q700D2" }, { "database": "O-GlcNAc Atlas", "id": "Q700D2", "url": "https://oglcnac.org/atlas/detail/Q700D2" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q700D2", "url": "https://oglcnac.org/atlas/detail/Q700D2", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FNTNVLRENHNRAPPPLSGV", "down_seq": "TSSVDNNPFQSNRSGLNPAQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser446", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q700D2", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q700D2" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "443", "end_pos": "443" }, { "start_pos": "446", "end_pos": "446" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q700D2-1.443.443", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q700D2-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q700D2-1", "length": 503, "uniprot_id": "IDD10_ARATH", "protein_name": "Zinc finger protein JACKDAW", "refseq_ac": "NP_195935", "refseq_name": "C2H2-like zinc finger protein", "gene_name": "JKD", "gene_names_uniprotkb": "JKD; F15A17.180; IDD10; IDZ3; MOK16.6", "gene_names_refseq": "F15A17.180; F15A17_180; JACKDAW; JKD", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q700D2", "url": "https://www.uniprot.org/uniprotkb/Q700D2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q700D2", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q700D2" }, { "database": "O-GlcNAc Atlas", "id": "Q700D2", "url": "https://oglcnac.org/atlas/detail/Q700D2" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q700D2", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q700D2", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q700D2", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q700D2" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "443", "end_pos": "443" }, { "start_pos": "446", "end_pos": "446" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q700D2-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "Q700D2-1", "length": 503, "uniprot_id": "IDD10_ARATH", "protein_name": "Zinc finger protein JACKDAW", "refseq_ac": "NP_195935", "refseq_name": "C2H2-like zinc finger protein", "gene_name": "JKD", "gene_names_uniprotkb": "JKD; F15A17.180; IDD10; IDZ3; MOK16.6", "gene_names_refseq": "F15A17.180; F15A17_180; JACKDAW; JKD", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q700D2", "url": "https://www.uniprot.org/uniprotkb/Q700D2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q700D2", "url": "https://www.uniprot.org/uniprotkb/Q700D2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q700D2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700D2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKKKRNQPGTPDPDADVIAL", "down_seq": "PTTLMATNRFVCEICNKGFQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q700D2", "url": "https://www.uniprot.org/uniprotkb/Q700D2" }, { "database": "iPTMnet", "id": "Q700D2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q700D2" } ], "site_lbl": "Ser72" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "443", "end_pos": "443" }, { "start_pos": "446", "end_pos": "446" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "CDLQLTKDGLGICFPDLNLA", "down_seq": "ASTIDRVYPNREKSYSVNGV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn105", "evidence": [ { "id": "Q7Y208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y208#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.192.192", "start_pos": 192, "end_pos": 192, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TLNREGFWLNVQHDAFYEQQ", "down_seq": "LSMSSFLLSVSRTVSIDFIS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn192", "evidence": [ { "id": "Q7Y208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y208#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.248.248", "start_pos": 248, "end_pos": 248, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "RNGPTFVFQFLGKEDFEPTT", "down_seq": "RTYGSILSNLTFVKTFASGI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn248", "evidence": [ { "id": "Q7Y208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y208#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "upstream", "id": "Q7Y208-1.257.257", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.257.257", "start_pos": 257, "end_pos": 257, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FLGKEDFEPTTNRTYGSILS", "down_seq": "LTFVKTFASGILVPKSYILP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn257", "evidence": [ { "id": "Q7Y208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y208#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q7Y208-1.248.248", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.315.315", "start_pos": 315, "end_pos": 315, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HKAGLQVYVSGFANDVDIAY", "down_seq": "YSSDPVSEYLSFVDNGDFSV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn315", "evidence": [ { "id": "Q7Y208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y208#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.359.359", "start_pos": 359, "end_pos": 359, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LSDFPITASAAVDCFSHIGR", "down_seq": "ATKQVDFLVISKDGASGDYP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn359", "evidence": [ { "id": "Q7Y208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y208#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.430.430", "start_pos": 430, "end_pos": 430, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "FCLRSIDLRNSIAALQNTFS", "down_seq": "RSTSVPEISSVPGIFTFSLT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn430", "evidence": [ { "id": "Q7Y208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y208#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.534.534", "start_pos": 534, "end_pos": 534, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "KQGLDVVQAVLDTLTEAGYS", "down_seq": "GTTTTKVMIQSTNSSVLVDF", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn534", "evidence": [ { "id": "Q7Y208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y208#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q7Y208-1.547.547", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.547.547", "start_pos": 547, "end_pos": 547, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LTEAGYSNGTTTTKVMIQST", "down_seq": "SSVLVDFKKQSKYETVYKIE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn547", "evidence": [ { "id": "Q7Y208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y208#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q7Y208-1.534.534", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.654.654", "start_pos": 654, "end_pos": 654, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "YDFFSDATVEINAYIYGAGI", "down_seq": "GTITEFPFTAARYKRNRCLG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn654", "evidence": [ { "id": "Q7Y208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Y208#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.730.730", "start_pos": 730, "end_pos": 730, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IEADVTEPPLSPVIAKAPTS", "down_seq": "PGTPSTIAQAPSGQTRLKLS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr730", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q7Y208-1.733.733", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q7Y208-1.733.733", "start_pos": 733, "end_pos": 733, "uniprot_canonical_ac": "Q7Y208-1", "length": 763, "uniprot_id": "GPDL1_ARATH", "protein_name": "Glycerophosphodiester phosphodiesterase GDPDL1", "refseq_ac": "NP_176869", "refseq_name": "SHV3-like 2", "gene_name": "GDPDL1", "gene_names_uniprotkb": "GDPDL1; F1O19.5; GDPL3; SVL2", "gene_names_refseq": "F1O19.5; F1O19_5; GDPDL1; Glycerophosphodiester phosphodiesterase (GDPD) like 1; SHV3-like 2; SVL2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q7Y208", "url": "https://www.uniprot.org/uniprotkb/Q7Y208" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DVTEPPLSPVIAKAPTSTPG", "down_seq": "PSTIAQAPSGQTRLKLSLLL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr733", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "192", "end_pos": "192" }, { "start_pos": "248", "end_pos": "248" }, { "start_pos": "257", "end_pos": "257" }, { "start_pos": "315", "end_pos": "315" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "430", "end_pos": "430" }, { "start_pos": "534", "end_pos": "534" }, { "start_pos": "547", "end_pos": "547" }, { "start_pos": "654", "end_pos": "654" }, { "start_pos": "730", "end_pos": "730" }, { "start_pos": "733", "end_pos": "733" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q7Y208-1.730.730", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84JG2-1.161.161", "start_pos": 161, "end_pos": 161, "uniprot_canonical_ac": "Q84JG2-1", "length": 469, "uniprot_id": "SWI3B_ARATH", "protein_name": "SWI/SNF complex subunit SWI3B", "refseq_ac": "NP_180919", "refseq_name": "switch subunit 3", "gene_name": "SWI3B", "gene_names_uniprotkb": "SWI3B; CHB2; F4P9.38", "gene_names_refseq": "ATSWI3B; CHB2; CHROMATIN REMODELING COMPLEX SUBUNIT B; F4P9.38; F4P9_38; SWI3B; switch subunit 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JG2", "url": "https://www.uniprot.org/uniprotkb/Q84JG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SAKPLKWEEKEAGKSAGDAA", "down_seq": "EPATTVKETAKRNCNGCKAI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "site_lbl": "Ser161" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "377", "end_pos": "377" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q84JG2-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "Q84JG2-1", "length": 469, "uniprot_id": "SWI3B_ARATH", "protein_name": "SWI/SNF complex subunit SWI3B", "refseq_ac": "NP_180919", "refseq_name": "switch subunit 3", "gene_name": "SWI3B", "gene_names_uniprotkb": "SWI3B; CHB2; F4P9.38", "gene_names_refseq": "ATSWI3B; CHB2; CHROMATIN REMODELING COMPLEX SUBUNIT B; F4P9.38; F4P9_38; SWI3B; switch subunit 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JG2", "url": "https://www.uniprot.org/uniprotkb/Q84JG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] } ], "crossref": [ { "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PDPGGSGEILPSTPSLSETT", "down_seq": "GGAAAASKSAQLPSSSSDID", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "377", "end_pos": "377" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JG2-1.279.279", "start_pos": 279, "end_pos": 279, "uniprot_canonical_ac": "Q84JG2-1", "length": 469, "uniprot_id": "SWI3B_ARATH", "protein_name": "SWI/SNF complex subunit SWI3B", "refseq_ac": "NP_180919", "refseq_name": "switch subunit 3", "gene_name": "SWI3B", "gene_names_uniprotkb": "SWI3B; CHB2; F4P9.38", "gene_names_refseq": "ATSWI3B; CHB2; CHROMATIN REMODELING COMPLEX SUBUNIT B; F4P9.38; F4P9_38; SWI3B; switch subunit 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JG2", "url": "https://www.uniprot.org/uniprotkb/Q84JG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EKDCVSQFVKLPFGEQFVKE", "down_seq": "DSEDGLEMFDQIKDSDIPES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser279" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "377", "end_pos": "377" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q84JG2-1.281.281", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JG2-1.281.281", "start_pos": 281, "end_pos": 281, "uniprot_canonical_ac": "Q84JG2-1", "length": 469, "uniprot_id": "SWI3B_ARATH", "protein_name": "SWI/SNF complex subunit SWI3B", "refseq_ac": "NP_180919", "refseq_name": "switch subunit 3", "gene_name": "SWI3B", "gene_names_uniprotkb": "SWI3B; CHB2; F4P9.38", "gene_names_refseq": "ATSWI3B; CHB2; CHROMATIN REMODELING COMPLEX SUBUNIT B; F4P9.38; F4P9_38; SWI3B; switch subunit 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JG2", "url": "https://www.uniprot.org/uniprotkb/Q84JG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DCVSQFVKLPFGEQFVKESD", "down_seq": "EDGLEMFDQIKDSDIPESEG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser281" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "377", "end_pos": "377" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q84JG2-1.279.279", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JG2-1.307.307", "start_pos": 307, "end_pos": 307, "uniprot_canonical_ac": "Q84JG2-1", "length": 469, "uniprot_id": "SWI3B_ARATH", "protein_name": "SWI/SNF complex subunit SWI3B", "refseq_ac": "NP_180919", "refseq_name": "switch subunit 3", "gene_name": "SWI3B", "gene_names_uniprotkb": "SWI3B; CHB2; F4P9.38", "gene_names_refseq": "ATSWI3B; CHB2; CHROMATIN REMODELING COMPLEX SUBUNIT B; F4P9.38; F4P9_38; SWI3B; switch subunit 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JG2", "url": "https://www.uniprot.org/uniprotkb/Q84JG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MFDQIKDSDIPESEGIDKDG", "down_seq": "SPNKRIKLTPLADASNPIMA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser307" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "377", "end_pos": "377" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q84JG2-1.308.308", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JG2-1.308.308", "start_pos": 308, "end_pos": 308, "uniprot_canonical_ac": "Q84JG2-1", "length": 469, "uniprot_id": "SWI3B_ARATH", "protein_name": "SWI/SNF complex subunit SWI3B", "refseq_ac": "NP_180919", "refseq_name": "switch subunit 3", "gene_name": "SWI3B", "gene_names_uniprotkb": "SWI3B; CHB2; F4P9.38", "gene_names_refseq": "ATSWI3B; CHB2; CHROMATIN REMODELING COMPLEX SUBUNIT B; F4P9.38; F4P9_38; SWI3B; switch subunit 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JG2", "url": "https://www.uniprot.org/uniprotkb/Q84JG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FDQIKDSDIPESEGIDKDGS", "down_seq": "PNKRIKLTPLADASNPIMAQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser308" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "377", "end_pos": "377" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q84JG2-1.307.307", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84JG2-1.377.377", "start_pos": 377, "end_pos": 377, "uniprot_canonical_ac": "Q84JG2-1", "length": 469, "uniprot_id": "SWI3B_ARATH", "protein_name": "SWI/SNF complex subunit SWI3B", "refseq_ac": "NP_180919", "refseq_name": "switch subunit 3", "gene_name": "SWI3B", "gene_names_uniprotkb": "SWI3B; CHB2; F4P9.38", "gene_names_refseq": "ATSWI3B; CHB2; CHROMATIN REMODELING COMPLEX SUBUNIT B; F4P9.38; F4P9_38; SWI3B; switch subunit 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JG2", "url": "https://www.uniprot.org/uniprotkb/Q84JG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YEADKNASRDPNRQDANAAS", "down_seq": "GETTRNESERAWADAKSLIE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q84JG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q84JG2" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser377" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "161", "end_pos": "161" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "279", "end_pos": "279" }, { "start_pos": "281", "end_pos": "281" }, { "start_pos": "307", "end_pos": "307" }, { "start_pos": "308", "end_pos": "308" }, { "start_pos": "377", "end_pos": "377" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MC7-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q84MC7-1", "length": 187, "uniprot_id": "PYL9_ARATH", "protein_name": "Abscisic acid receptor PYL9", "refseq_ac": "NP_563626", "refseq_name": "regulatory component of ABA receptor 1", "gene_name": "PYL9", "gene_names_uniprotkb": "PYL9; F6F3.16; RCAR1", "gene_names_refseq": "F6F3.16; F6F3_16; PYL9; PYRABACTIN RESISTANCE 1-LIKE 9; RCAR1; regulatory component of ABA receptor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into the abscisic acid stereospecificity by the ABA receptors PYR/PYL/RCAR.", "journal": "PloS one", "date": "2013", "authors": "Zhang Xingliang, Jiang Lun, Wang Guoqiang, Yu Lin, Zhang Qi, Xin Qi, Wu Wei, Gong Zhizhong, Chen Zhongzhou", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "reference": [ { "type": "PubMed", "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015" } ] } ], "crossref": [ { "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "TTSTERLELLDDEEHILGIK", "down_seq": "IGGDHRLKNYSSILTVHPEI", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "V", "comment": "Increased HAB1 inhibitory ability.", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" }, { "database": "PubMed", "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MC7-1.159.159", "start_pos": 159, "end_pos": 159, "uniprot_canonical_ac": "Q84MC7-1", "length": 187, "uniprot_id": "PYL9_ARATH", "protein_name": "Abscisic acid receptor PYL9", "refseq_ac": "NP_563626", "refseq_name": "regulatory component of ABA receptor 1", "gene_name": "PYL9", "gene_names_uniprotkb": "PYL9; F6F3.16; RCAR1", "gene_names_refseq": "F6F3.16; F6F3_16; PYL9; PYRABACTIN RESISTANCE 1-LIKE 9; RCAR1; regulatory component of ABA receptor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2014-05", "authors": "Nakagawa Masahiro, Kagiyama Megumi, Shibata Nobuyuki, Hirano Yoshinori, Hakoshima Toshio", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "reference": [ { "type": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] }, { "title": "Structural insights into the abscisic acid stereospecificity by the ABA receptors PYR/PYL/RCAR.", "journal": "PloS one", "date": "2013", "authors": "Zhang Xingliang, Jiang Lun, Wang Guoqiang, Yu Lin, Zhang Qi, Xin Qi, Wu Wei, Gong Zhizhong, Chen Zhongzhou", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "reference": [ { "type": "PubMed", "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015" } ] } ], "crossref": [ { "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "TMVIESFVVDVPQGNTKDET", "down_seq": "YFVEALIRCNLKSLADVSER", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Abnormal stable homogeneity in reducing condition.", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" }, { "database": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" }, { "database": "PubMed", "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q84MC7-1.165.165", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MC7-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "Q84MC7-1", "length": 187, "uniprot_id": "PYL9_ARATH", "protein_name": "Abscisic acid receptor PYL9", "refseq_ac": "NP_563626", "refseq_name": "regulatory component of ABA receptor 1", "gene_name": "PYL9", "gene_names_uniprotkb": "PYL9; F6F3.16; RCAR1", "gene_names_refseq": "F6F3.16; F6F3_16; PYL9; PYRABACTIN RESISTANCE 1-LIKE 9; RCAR1; regulatory component of ABA receptor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural insights into the abscisic acid stereospecificity by the ABA receptors PYR/PYL/RCAR.", "journal": "PloS one", "date": "2013", "authors": "Zhang Xingliang, Jiang Lun, Wang Guoqiang, Yu Lin, Zhang Qi, Xin Qi, Wu Wei, Gong Zhizhong, Chen Zhongzhou", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "reference": [ { "type": "PubMed", "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015" } ] } ], "crossref": [ { "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "FVVDVPQGNTKDETCYFVEA", "down_seq": "IRCNLKSLADVSERLASQDI", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "V", "comment": "Slight potentiation of (-)-ABA-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" }, { "database": "PubMed", "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q84MC7-1.159.159", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MC7-1.29.29", "start_pos": 29, "end_pos": 29, "uniprot_canonical_ac": "Q84MC7-1", "length": 187, "uniprot_id": "PYL9_ARATH", "protein_name": "Abscisic acid receptor PYL9", "refseq_ac": "NP_563626", "refseq_name": "regulatory component of ABA receptor 1", "gene_name": "PYL9", "gene_names_uniprotkb": "PYL9; F6F3.16; RCAR1", "gene_names_refseq": "F6F3.16; F6F3_16; PYL9; PYRABACTIN RESISTANCE 1-LIKE 9; RCAR1; regulatory component of ABA receptor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2014-05", "authors": "Nakagawa Masahiro, Kagiyama Megumi, Shibata Nobuyuki, Hirano Yoshinori, Hakoshima Toshio", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "reference": [ { "type": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] }, { "title": "Structural insights into the abscisic acid stereospecificity by the ABA receptors PYR/PYL/RCAR.", "journal": "PloS one", "date": "2013", "authors": "Zhang Xingliang, Jiang Lun, Wang Guoqiang, Yu Lin, Zhang Qi, Xin Qi, Wu Wei, Gong Zhizhong, Chen Zhongzhou", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "reference": [ { "type": "PubMed", "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015" } ] } ], "crossref": [ { "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "TAMYGGLETVQYVRTHHQHL", "down_seq": "RENQCTSALVKHIKAPLHLV", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Stable homogeneity in reducing condition.", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" }, { "database": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" }, { "database": "PubMed", "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q84MC7-1.34.34", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q84MC7-1.34.34", "start_pos": 34, "end_pos": 34, "uniprot_canonical_ac": "Q84MC7-1", "length": 187, "uniprot_id": "PYL9_ARATH", "protein_name": "Abscisic acid receptor PYL9", "refseq_ac": "NP_563626", "refseq_name": "regulatory component of ABA receptor 1", "gene_name": "PYL9", "gene_names_uniprotkb": "PYL9; F6F3.16; RCAR1", "gene_names_refseq": "F6F3.16; F6F3_16; PYL9; PYRABACTIN RESISTANCE 1-LIKE 9; RCAR1; regulatory component of ABA receptor 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2014-05", "authors": "Nakagawa Masahiro, Kagiyama Megumi, Shibata Nobuyuki, Hirano Yoshinori, Hakoshima Toshio", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "reference": [ { "type": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] }, { "title": "Structural insights into the abscisic acid stereospecificity by the ABA receptors PYR/PYL/RCAR.", "journal": "PloS one", "date": "2013", "authors": "Zhang Xingliang, Jiang Lun, Wang Guoqiang, Yu Lin, Zhang Qi, Xin Qi, Wu Wei, Gong Zhizhong, Chen Zhongzhou", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" } ], "reference": [ { "type": "PubMed", "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015" } ] } ], "crossref": [ { "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "GLETVQYVRTHHQHLCRENQ", "down_seq": "TSALVKHIKAPLHLVWSLVR", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Stable homogeneity in reducing condition.", "evidence": [ { "database": "UniProtKB", "id": "Q84MC7", "url": "https://www.uniprot.org/uniprotkb/Q84MC7" }, { "database": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" }, { "database": "PubMed", "id": "23844015", "url": "https://glygen.org/publication/PubMed/23844015" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "159", "end_pos": "159" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "29", "end_pos": "29" }, { "start_pos": "34", "end_pos": "34" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q84MC7-1.29.29", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.33.33", "start_pos": 33, "end_pos": 33, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] }, { "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MEEDSEKQSIKGESSLEPDS", "down_seq": "PSSPKITARWNPSEACRPLV", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr33", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Thr33" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8GUI6-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8GUI6-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GUI6-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GUI6-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GUI6-1.36.36", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.171.171", "start_pos": 171, "end_pos": 171, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.", "journal": "The Plant cell", "date": "2018-01", "authors": "Yang Zhenlin, Qiu Qi, Chen Wei, Jia Bei, Chen Xiaomei, Hu Hongmiao, He Kaixuan, Deng Xian, Li Sisi, Tao W Andy, Cao Xiaofeng, Du Jiamu", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "RDSGCDTASSGSSDSEGKFG", "down_seq": "QTGPDFTLEEFQKYDEYFKE", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "K", "comment": "Decreased demethylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8GUI6-1.163.163", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.285.285", "start_pos": 285, "end_pos": 285, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.", "journal": "The Plant cell", "date": "2018-01", "authors": "Yang Zhenlin, Qiu Qi, Chen Wei, Jia Bei, Chen Xiaomei, Hu Hongmiao, He Kaixuan, Deng Xian, Li Sisi, Tao W Andy, Cao Xiaofeng, Du Jiamu", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "SQCGWNLNNLSRLPGSVLAF", "down_seq": "SCDISGVIVPWLYVGMCFST", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Decreased demethylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q8GUI6-1.290.290", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q8GUI6-1.298.298", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.290.290", "start_pos": 290, "end_pos": 290, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.", "journal": "The Plant cell", "date": "2018-01", "authors": "Yang Zhenlin, Qiu Qi, Chen Wei, Jia Bei, Chen Xiaomei, Hu Hongmiao, He Kaixuan, Deng Xian, Li Sisi, Tao W Andy, Cao Xiaofeng, Du Jiamu", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NLNNLSRLPGSVLAFESCDI", "down_seq": "GVIVPWLYVGMCFSTFCWHV", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Decreased demethylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8GUI6-1.285.285", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GUI6-1.298.298", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q8GUI6-1.309.309", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.298.298", "start_pos": 298, "end_pos": 298, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.", "journal": "The Plant cell", "date": "2018-01", "authors": "Yang Zhenlin, Qiu Qi, Chen Wei, Jia Bei, Chen Xiaomei, Hu Hongmiao, He Kaixuan, Deng Xian, Li Sisi, Tao W Andy, Cao Xiaofeng, Du Jiamu", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "PGSVLAFESCDISGVIVPWL", "down_seq": "VGMCFSTFCWHVEDHHLYSM", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Decreased demethylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8GUI6-1.285.285", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8GUI6-1.290.290", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q8GUI6-1.309.309", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q8GUI6-1.311.311", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8GUI6-1.312.312", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.", "journal": "The Plant cell", "date": "2018-01", "authors": "Yang Zhenlin, Qiu Qi, Chen Wei, Jia Bei, Chen Xiaomei, Hu Hongmiao, He Kaixuan, Deng Xian, Li Sisi, Tao W Andy, Cao Xiaofeng, Du Jiamu", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "ISGVIVPWLYVGMCFSTFCW", "down_seq": "VEDHHLYSMNYLHTGDPKVW", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of demethylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8GUI6-1.290.290", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q8GUI6-1.298.298", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GUI6-1.311.311", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GUI6-1.312.312", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.", "journal": "The Plant cell", "date": "2018-01", "authors": "Yang Zhenlin, Qiu Qi, Chen Wei, Jia Bei, Chen Xiaomei, Hu Hongmiao, He Kaixuan, Deng Xian, Li Sisi, Tao W Andy, Cao Xiaofeng, Du Jiamu", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "GVIVPWLYVGMCFSTFCWHV", "down_seq": "DHHLYSMNYLHTGDPKVWYG", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Loss of demethylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8GUI6-1.298.298", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GUI6-1.309.309", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GUI6-1.312.312", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.", "journal": "The Plant cell", "date": "2018-01", "authors": "Yang Zhenlin, Qiu Qi, Chen Wei, Jia Bei, Chen Xiaomei, Hu Hongmiao, He Kaixuan, Deng Xian, Li Sisi, Tao W Andy, Cao Xiaofeng, Du Jiamu", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "D", "start_aa": "D", "up_seq": "VIVPWLYVGMCFSTFCWHVE", "down_seq": "HHLYSMNYLHTGDPKVWYGI", "mutagenesis": [ { "sequence_org": "D", "sequence_mut": "A", "comment": "Decreased demethylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8GUI6-1.298.298", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GUI6-1.309.309", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GUI6-1.311.311", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.363.363", "start_pos": 363, "end_pos": 363, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.", "journal": "The Plant cell", "date": "2018-01", "authors": "Yang Zhenlin, Qiu Qi, Chen Wei, Jia Bei, Chen Xiaomei, Hu Hongmiao, He Kaixuan, Deng Xian, Li Sisi, Tao W Andy, Cao Xiaofeng, Du Jiamu", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "VMKKRLPDLFEEQPDLLHQL", "down_seq": "TQLSPRILKEEGVPVYRAVQ", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Decreased demethylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.387.387", "start_pos": 387, "end_pos": 387, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis.", "journal": "Genes & development", "date": "2010-05-15", "authors": "Searle Iain R, Pontes Olga, Melnyk Charles W, Smith Lisa M, Baulcombe David C", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "20478993", "url": "https://glygen.org/publication/PubMed/20478993" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "20478993", "url": "https://glygen.org/publication/PubMed/20478993", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "SPRILKEEGVPVYRAVQRSG", "down_seq": "FILTFPKAYHSGFNCGFNCA", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In jmj14-3; loss of transgenic photobleaching phenotype due to RNA silencing.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "20478993", "url": "https://glygen.org/publication/PubMed/20478993" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q8GUI6-1.397.397", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.397.397", "start_pos": 397, "end_pos": 397, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.", "journal": "The Plant cell", "date": "2018-01", "authors": "Yang Zhenlin, Qiu Qi, Chen Wei, Jia Bei, Chen Xiaomei, Hu Hongmiao, He Kaixuan, Deng Xian, Li Sisi, Tao W Andy, Cao Xiaofeng, Du Jiamu", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] }, { "title": "JMJ14 is an H3K4 demethylase regulating flowering time in Arabidopsis.", "journal": "Cell research", "date": "2010-03", "authors": "Lu Falong, Cui Xia, Zhang Shuaibin, Liu Chunyan, Cao Xiaofeng", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "20177424", "url": "https://glygen.org/publication/PubMed/20177424" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20177424", "url": "https://glygen.org/publication/PubMed/20177424", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "PVYRAVQRSGEFILTFPKAY", "down_seq": "SGFNCGFNCAEAVNVAPVDW", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of demethylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" }, { "database": "PubMed", "id": "20177424", "url": "https://glygen.org/publication/PubMed/20177424" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8GUI6-1.387.387", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.516.516", "start_pos": 516, "end_pos": 516, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases.", "journal": "The Plant cell", "date": "2018-01", "authors": "Yang Zhenlin, Qiu Qi, Chen Wei, Jia Bei, Chen Xiaomei, Hu Hongmiao, He Kaixuan, Deng Xian, Li Sisi, Tao W Andy, Cao Xiaofeng, Du Jiamu", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "NHLQDGFSLRKMEGDFDNKR", "down_seq": "RECFLCFYDLHMSASSCKCS", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Decreased activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" }, { "database": "PubMed", "id": "29233856", "url": "https://glygen.org/publication/PubMed/29233856" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KIGYTRRKRDSGCDTASSGS", "down_seq": "DSEGKFGFQTGPDFTLEEFQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser163" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q8GUI6-1.171.171", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.26.26", "start_pos": 26, "end_pos": 26, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLAESVAMEEDSEKQSIKGE", "down_seq": "SLEPDSTPSSPKITARWNPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser26" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8GUI6-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GUI6-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GUI6-1.33.33", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8GUI6-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8GUI6-1.36.36", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.27.27", "start_pos": 27, "end_pos": 27, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LAESVAMEEDSEKQSIKGES", "down_seq": "LEPDSTPSSPKITARWNPSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser27" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8GUI6-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GUI6-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GUI6-1.33.33", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8GUI6-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8GUI6-1.36.36", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AMEEDSEKQSIKGESSLEPD", "down_seq": "TPSSPKITARWNPSEACRPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8GUI6-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GUI6-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GUI6-1.33.33", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8GUI6-1.35.35", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8GUI6-1.36.36", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.35.35", "start_pos": 35, "end_pos": 35, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDSEKQSIKGESSLEPDSTP", "down_seq": "SPKITARWNPSEACRPLVDD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser35" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8GUI6-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8GUI6-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GUI6-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8GUI6-1.33.33", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GUI6-1.36.36", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSEKQSIKGESSLEPDSTPS", "down_seq": "PKITARWNPSEACRPLVDDA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser36" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8GUI6-1.26.26", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q8GUI6-1.27.27", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8GUI6-1.32.32", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8GUI6-1.33.33", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GUI6-1.35.35", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUI6-1.953.953", "start_pos": 953, "end_pos": 953, "uniprot_canonical_ac": "Q8GUI6-1", "length": 954, "uniprot_id": "JMJ14_ARATH", "protein_name": "Lysine-specific demethylase JMJ14", "refseq_ac": "NP_001031681", "refseq_name": "JUMONJI 14", "gene_name": "JMJ14", "gene_names_uniprotkb": "JMJ14; F9F13.50; JMJ4; PKDM7B", "gene_names_refseq": "F9F13.50; F9F13_50; JMJ14; JUMONJI 14; PKDM7B", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUI6", "url": "https://www.uniprot.org/uniprotkb/Q8GUI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6-1" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6-1" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ETRNTELKEELSTLVDKMEI", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8GUI6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8GUI6" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser953" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "33", "end_pos": "33" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "171", "end_pos": "171" }, { "start_pos": "285", "end_pos": "285" }, { "start_pos": "290", "end_pos": "290" }, { "start_pos": "298", "end_pos": "298" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "311", "end_pos": "311" }, { "start_pos": "312", "end_pos": "312" }, { "start_pos": "363", "end_pos": "363" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "516", "end_pos": "516" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "163", "end_pos": "163" }, { "start_pos": "26", "end_pos": "26" }, { "start_pos": "27", "end_pos": "27" }, { "start_pos": "32", "end_pos": "32" }, { "start_pos": "33", "end_pos": "33" }, { "start_pos": "35", "end_pos": "35" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "953", "end_pos": "953" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GUP1-1.616.616", "start_pos": 616, "end_pos": 616, "uniprot_canonical_ac": "Q8GUP1-1", "length": 734, "uniprot_id": "CTF77_ARATH", "protein_name": "Cleavage stimulation factor subunit 77", "refseq_ac": "NP_173218", "refseq_name": "Tetratricopeptide repeat (TPR)-like superfamily protein", "gene_name": "CSTF77", "gene_names_uniprotkb": "CSTF77; F11A6.10", "gene_names_refseq": "ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77; ATCSTF77; CSTF77; F11A6.10; F11A6_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUP1", "url": "https://www.uniprot.org/uniprotkb/Q8GUP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KTTPPALVAFLANLPIVDGP", "down_seq": "PNVDVVLSICLQSDFPTGQT", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr616", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "616", "end_pos": "616" }, { "start_pos": "657", "end_pos": "657" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GUP1-1.657.657", "start_pos": 657, "end_pos": 657, "uniprot_canonical_ac": "Q8GUP1-1", "length": 734, "uniprot_id": "CTF77_ARATH", "protein_name": "Cleavage stimulation factor subunit 77", "refseq_ac": "NP_173218", "refseq_name": "Tetratricopeptide repeat (TPR)-like superfamily protein", "gene_name": "CSTF77", "gene_names_uniprotkb": "CSTF77; F11A6.10", "gene_names_refseq": "ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77; ATCSTF77; CSTF77; F11A6.10; F11A6_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUP1", "url": "https://www.uniprot.org/uniprotkb/Q8GUP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VKQSFAAKGNPPSQNDPSGP", "down_seq": "RGVSQRLPRDRRATKRKDSD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr657", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "616", "end_pos": "616" }, { "start_pos": "657", "end_pos": "657" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8GUP1-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q8GUP1-1", "length": 734, "uniprot_id": "CTF77_ARATH", "protein_name": "Cleavage stimulation factor subunit 77", "refseq_ac": "NP_173218", "refseq_name": "Tetratricopeptide repeat (TPR)-like superfamily protein", "gene_name": "CSTF77", "gene_names_uniprotkb": "CSTF77; F11A6.10", "gene_names_refseq": "ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77; ATCSTF77; CSTF77; F11A6.10; F11A6_10", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GUP1", "url": "https://www.uniprot.org/uniprotkb/Q8GUP1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q8GUP1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8GUP1" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8GUP1", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8GUP1", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q8GUP1", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8GUP1" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "616", "end_pos": "616" }, { "start_pos": "657", "end_pos": "657" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXV7-1.287.287", "start_pos": 287, "end_pos": 287, "uniprot_canonical_ac": "Q8GXV7-1", "length": 303, "uniprot_id": "PDLP1_ARATH", "protein_name": "Plasmodesmata-located protein 1", "refseq_ac": "NP_199211", "refseq_name": "plasmodesmata-located protein 1", "gene_name": "PDLP1", "gene_names_uniprotkb": "PDLP1; CRRSP56; MRH10.9", "gene_names_refseq": "MRH10.9; MRH10_9; PDLP1A; PDLP1; PLASMODESMATA-LOCATED PROTEIN 1A; plasmodesmata-located protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Specific targeting of a plasmodesmal protein affecting cell-to-cell communication.", "journal": "PLoS biology", "date": "2008-01", "authors": "Thomas Carole L, Bayer Emmanuelle M, Ritzenthaler Christophe, Fernandez-Calvino Lourdes, Maule Andrew J", "evidence": [ { "database": "UniProtKB", "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7" } ], "reference": [ { "type": "PubMed", "id": "18215111", "url": "https://glygen.org/publication/PubMed/18215111" } ] } ], "crossref": [ { "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18215111", "url": "https://glygen.org/publication/PubMed/18215111", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "RTIALAVGGVFVLGFVIVCL", "down_seq": "VLRSAMKKKSNKYDAY", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "No effect on targeting to plasmodesma.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7" }, { "database": "PubMed", "id": "18215111", "url": "https://glygen.org/publication/PubMed/18215111" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "287", "end_pos": "287" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "289", "end_pos": "289" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8GXV7-1.288.288", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GXV7-1.289.289", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXV7-1.288.288", "start_pos": 288, "end_pos": 288, "uniprot_canonical_ac": "Q8GXV7-1", "length": 303, "uniprot_id": "PDLP1_ARATH", "protein_name": "Plasmodesmata-located protein 1", "refseq_ac": "NP_199211", "refseq_name": "plasmodesmata-located protein 1", "gene_name": "PDLP1", "gene_names_uniprotkb": "PDLP1; CRRSP56; MRH10.9", "gene_names_refseq": "MRH10.9; MRH10_9; PDLP1A; PDLP1; PLASMODESMATA-LOCATED PROTEIN 1A; plasmodesmata-located protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Specific targeting of a plasmodesmal protein affecting cell-to-cell communication.", "journal": "PLoS biology", "date": "2008-01", "authors": "Thomas Carole L, Bayer Emmanuelle M, Ritzenthaler Christophe, Fernandez-Calvino Lourdes, Maule Andrew J", "evidence": [ { "database": "UniProtKB", "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7" } ], "reference": [ { "type": "PubMed", "id": "18215111", "url": "https://glygen.org/publication/PubMed/18215111" } ] } ], "crossref": [ { "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18215111", "url": "https://glygen.org/publication/PubMed/18215111", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "V", "start_aa": "V", "up_seq": "TIALAVGGVFVLGFVIVCLL", "down_seq": "LRSAMKKKSNKYDAY", "mutagenesis": [ { "sequence_org": "V", "sequence_mut": "A", "comment": "Retention in the endoplasmic reticulum.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7" }, { "database": "PubMed", "id": "18215111", "url": "https://glygen.org/publication/PubMed/18215111" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "287", "end_pos": "287" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "289", "end_pos": "289" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8GXV7-1.287.287", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GXV7-1.289.289", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXV7-1.289.289", "start_pos": 289, "end_pos": 289, "uniprot_canonical_ac": "Q8GXV7-1", "length": 303, "uniprot_id": "PDLP1_ARATH", "protein_name": "Plasmodesmata-located protein 1", "refseq_ac": "NP_199211", "refseq_name": "plasmodesmata-located protein 1", "gene_name": "PDLP1", "gene_names_uniprotkb": "PDLP1; CRRSP56; MRH10.9", "gene_names_refseq": "MRH10.9; MRH10_9; PDLP1A; PDLP1; PLASMODESMATA-LOCATED PROTEIN 1A; plasmodesmata-located protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Specific targeting of a plasmodesmal protein affecting cell-to-cell communication.", "journal": "PLoS biology", "date": "2008-01", "authors": "Thomas Carole L, Bayer Emmanuelle M, Ritzenthaler Christophe, Fernandez-Calvino Lourdes, Maule Andrew J", "evidence": [ { "database": "UniProtKB", "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7" } ], "reference": [ { "type": "PubMed", "id": "18215111", "url": "https://glygen.org/publication/PubMed/18215111" } ] } ], "crossref": [ { "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18215111", "url": "https://glygen.org/publication/PubMed/18215111", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "IALAVGGVFVLGFVIVCLLV", "down_seq": "RSAMKKKSNKYDAY", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "No effect on targeting to plasmodesma.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXV7", "url": "https://www.uniprot.org/uniprotkb/Q8GXV7" }, { "database": "PubMed", "id": "18215111", "url": "https://glygen.org/publication/PubMed/18215111" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "287", "end_pos": "287" }, { "start_pos": "288", "end_pos": "288" }, { "start_pos": "289", "end_pos": "289" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8GXV7-1.287.287", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GXV7-1.288.288", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.103.103", "start_pos": 103, "end_pos": 103, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LNDSVHYNPSDLSNWVESML", "down_seq": "ELNNPASSDLDTTRSCVDRS", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q8GXW1-1.86.86", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q8GXW1-1.89.89", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.212.212", "start_pos": 212, "end_pos": 212, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HQENLNLADALVKRVGTLAG", "down_seq": "QAGAMGKVATYFAQALARRI", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q8GXW1-1.223.223", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of conserved tyrosine residues important for gibberellin sensitivity of Arabidopsis RGL2 protein.", "journal": "Planta", "date": "2007-07", "authors": "Hussain Alamgir, Cao Dongni, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VKRVGTLAGSQAGAMGKVAT", "down_seq": "FAQALARRIYRDYTAETDVC", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] }, { "sequence_org": "Y", "sequence_mut": "E", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] }, { "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q8GXW1-1.212.212", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of conserved tyrosine residues important for gibberellin sensitivity of Arabidopsis RGL2 protein.", "journal": "Planta", "date": "2007-07", "authors": "Hussain Alamgir, Cao Dongni, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "ETDVCAAVNPSFEEVLEMHF", "down_seq": "ESCPYLKFAHFTANQAILEA", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Partially resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q8GXW1-1.271.271", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.271.271", "start_pos": 271, "end_pos": 271, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EEVLEMHFYESCPYLKFAHF", "down_seq": "ANQAILEAVTTARRVHVIDL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "C", "comment": "Partially resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] }, { "sequence_org": "T", "sequence_mut": "E", "comment": "Null mutant; resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q8GXW1-1.259.259", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.319.319", "start_pos": 319, "end_pos": 319, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WPALMQALALRPGGPPSFRL", "down_seq": "GIGPPQTENSDSLQQLGWKL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "C", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] }, { "sequence_org": "T", "sequence_mut": "E", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.381.381", "start_pos": 381, "end_pos": 381, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SDLEPEMFETRPESETLVVN", "down_seq": "VFELHRLLARSGSIEKLLNT", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.411.411", "start_pos": 411, "end_pos": 411, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RSGSIEKLLNTVKAIKPSIV", "down_seq": "VVEQEANHNGIVFLDRFNEA", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "C", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] }, { "sequence_org": "T", "sequence_mut": "E", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.435.435", "start_pos": 435, "end_pos": 435, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of conserved tyrosine residues important for gibberellin sensitivity of Arabidopsis RGL2 protein.", "journal": "Planta", "date": "2007-07", "authors": "Hussain Alamgir, Cao Dongni, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "QEANHNGIVFLDRFNEALHY", "down_seq": "SSLFDSLEDSYSLPSQDRVM", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] }, { "sequence_org": "Y", "sequence_mut": "E", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] }, { "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8GXW1-1.436.436", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8GXW1-1.437.437", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8GXW1-1.441.441", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.436.436", "start_pos": 436, "end_pos": 436, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EANHNGIVFLDRFNEALHYY", "down_seq": "SLFDSLEDSYSLPSQDRVMS", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8GXW1-1.435.435", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8GXW1-1.437.437", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GXW1-1.441.441", "categories": [ "mutagenesis_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8GXW1-1.456.456", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.437.437", "start_pos": 437, "end_pos": 437, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ANHNGIVFLDRFNEALHYYS", "down_seq": "LFDSLEDSYSLPSQDRVMSE", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8GXW1-1.435.435", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8GXW1-1.436.436", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8GXW1-1.441.441", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q8GXW1-1.456.456", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.441.441", "start_pos": 441, "end_pos": 441, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GIVFLDRFNEALHYYSSLFD", "down_seq": "LEDSYSLPSQDRVMSEVYLG", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "C", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8GXW1-1.435.435", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GXW1-1.436.436", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8GXW1-1.437.437", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q8GXW1-1.456.456", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.44.48", "start_pos": 44, "end_pos": 48, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "DELLA", "start_aa": "D", "up_seq": "GPSMADKKKADDDNNNSNMD", "down_seq": "VLGYKVRSSEMAEVAQKLEQ", "mutagenesis": [ { "sequence_org": "DELLA", "sequence_mut": "", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q8GXW1-1.52.52", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8GXW1-1.57.57", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.456.456", "start_pos": 456, "end_pos": 456, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SSLFDSLEDSYSLPSQDRVM", "down_seq": "EVYLGRQILNVVAAEGSDRV", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8GXW1-1.436.436", "categories": [ "mutagenesis_flag" ] }, { "distance": 19, "direction": "downstream", "id": "Q8GXW1-1.437.437", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q8GXW1-1.441.441", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.481.481", "start_pos": 481, "end_pos": 481, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GRQILNVVAAEGSDRVERHE", "down_seq": "AAQWRIRMKSAGFDPIHLGS", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "E", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q8GXW1-1.501.501", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.501.501", "start_pos": 501, "end_pos": 501, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TAAQWRIRMKSAGFDPIHLG", "down_seq": "SAFKQASMLLSLYATGDGYR", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8GXW1-1.481.481", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8GXW1-1.508.508", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.508.508", "start_pos": 508, "end_pos": 508, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RMKSAGFDPIHLGSSAFKQA", "down_seq": "MLLSLYATGDGYRVEENDGC", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8GXW1-1.501.501", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] }, { "title": "Identification of conserved tyrosine residues important for gibberellin sensitivity of Arabidopsis RGL2 protein.", "journal": "Planta", "date": "2007-07", "authors": "Hussain Alamgir, Cao Dongni, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KADDDNNNSNMDDELLAVLG", "down_seq": "KVRSSEMAEVAQKLEQLEMV", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] }, { "sequence_org": "Y", "sequence_mut": "E", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] }, { "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q8GXW1-1.44.48", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8GXW1-1.57.57", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.535.535", "start_pos": 535, "end_pos": 535, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ATGDGYRVEENDGCLMIGWQ", "down_seq": "RPLITTSAWKLA", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "C", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] }, { "sequence_org": "T", "sequence_mut": "E", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q8GXW1-1.542.542", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.542.542", "start_pos": 542, "end_pos": 542, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VEENDGCLMIGWQTRPLITT", "down_seq": "AWKLA", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "C", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8GXW1-1.535.535", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.57.57", "start_pos": 57, "end_pos": 57, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NNNSNMDDELLAVLGYKVRS", "down_seq": "EMAEVAQKLEQLEMVLSNDD", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8GXW1-1.44.48", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8GXW1-1.52.52", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.86.86", "start_pos": 86, "end_pos": 86, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of the conserved serine/threonine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2005-10", "authors": "Hussain Alamgir, Cao Dongni, Cheng Hui, Wen Zilong, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LEQLEMVLSNDDVGSTVLND", "down_seq": "VHYNPSDLSNWVESMLSELN", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "D", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "16167898", "url": "https://glygen.org/publication/PubMed/16167898" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8GXW1-1.89.89", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q8GXW1-1.103.103", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8GXW1-1.89.89", "start_pos": 89, "end_pos": 89, "uniprot_canonical_ac": "Q8GXW1-1", "length": 547, "uniprot_id": "RGL2_ARATH", "protein_name": "DELLA protein RGL2", "refseq_ac": "NP_186995", "refseq_name": "RGA-like 2", "gene_name": "RGL2", "gene_names_uniprotkb": "RGL2; SCL19; T21P5.13", "gene_names_refseq": "RGA-like 2; RGL2; T21P5.13; T21P5_13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of conserved tyrosine residues important for gibberellin sensitivity of Arabidopsis RGL2 protein.", "journal": "Planta", "date": "2007-07", "authors": "Hussain Alamgir, Cao Dongni, Peng Jinrong", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" } ], "reference": [ { "type": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] } ], "crossref": [ { "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LEMVLSNDDVGSTVLNDSVH", "down_seq": "NPSDLSNWVESMLSELNNPA", "mutagenesis": [ { "sequence_org": "Y", "sequence_mut": "A", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] }, { "sequence_org": "Y", "sequence_mut": "E", "comment": "Resistant to GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] }, { "sequence_org": "Y", "sequence_mut": "F", "comment": "No effect on GA-mediated degradation.", "evidence": [ { "database": "UniProtKB", "id": "Q8GXW1", "url": "https://www.uniprot.org/uniprotkb/Q8GXW1" }, { "database": "PubMed", "id": "17333251", "url": "https://glygen.org/publication/PubMed/17333251" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "103", "end_pos": "103" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "271", "end_pos": "271" }, { "start_pos": "319", "end_pos": "319" }, { "start_pos": "381", "end_pos": "381" }, { "start_pos": "411", "end_pos": "411" }, { "start_pos": "435", "end_pos": "435" }, { "start_pos": "436", "end_pos": "436" }, { "start_pos": "437", "end_pos": "437" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "44", "end_pos": "48" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "481", "end_pos": "481" }, { "start_pos": "501", "end_pos": "501" }, { "start_pos": "508", "end_pos": "508" }, { "start_pos": "52", "end_pos": "52" }, { "start_pos": "535", "end_pos": "535" }, { "start_pos": "542", "end_pos": "542" }, { "start_pos": "57", "end_pos": "57" }, { "start_pos": "86", "end_pos": "86" }, { "start_pos": "89", "end_pos": "89" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8GXW1-1.86.86", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8GXW1-1.103.103", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G0-1.125.125", "start_pos": 125, "end_pos": 125, "uniprot_canonical_ac": "Q8H1G0-1", "length": 302, "uniprot_id": "GAT28_ARATH", "protein_name": "GATA transcription factor 28", "refseq_ac": "NP_564593", "refseq_name": "ZIM-LIKE 2", "gene_name": "GATA28", "gene_names_uniprotkb": "GATA28; F19C24.17; F5D21.22; TIFY2A; ZML2", "gene_names_refseq": "F5D21.22; F5D21_22; GATA TRANSCRIPTION FACTOR 28; GATA28; TIFY2A; ZIM-LIKE 2; ZML2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G0", "url": "https://www.uniprot.org/uniprotkb/Q8H1G0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AVLLLLGGRELPQAAPPGLG", "down_seq": "PHQNNRVSSLPGTPQRFSIP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser125" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "270", "end_pos": "270" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q8H1G0-1.133.133", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8H1G0-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q8H1G0-1.138.138", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G0-1.133.133", "start_pos": 133, "end_pos": 133, "uniprot_canonical_ac": "Q8H1G0-1", "length": 302, "uniprot_id": "GAT28_ARATH", "protein_name": "GATA transcription factor 28", "refseq_ac": "NP_564593", "refseq_name": "ZIM-LIKE 2", "gene_name": "GATA28", "gene_names_uniprotkb": "GATA28; F19C24.17; F5D21.22; TIFY2A; ZML2", "gene_names_refseq": "F5D21.22; F5D21_22; GATA TRANSCRIPTION FACTOR 28; GATA28; TIFY2A; ZIM-LIKE 2; ZML2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G0", "url": "https://www.uniprot.org/uniprotkb/Q8H1G0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RELPQAAPPGLGSPHQNNRV", "down_seq": "SLPGTPQRFSIPQRLASLVR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser133" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "270", "end_pos": "270" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8H1G0-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8H1G0-1.134.134", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8H1G0-1.138.138", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G0-1.134.134", "start_pos": 134, "end_pos": 134, "uniprot_canonical_ac": "Q8H1G0-1", "length": 302, "uniprot_id": "GAT28_ARATH", "protein_name": "GATA transcription factor 28", "refseq_ac": "NP_564593", "refseq_name": "ZIM-LIKE 2", "gene_name": "GATA28", "gene_names_uniprotkb": "GATA28; F19C24.17; F5D21.22; TIFY2A; ZML2", "gene_names_refseq": "F5D21.22; F5D21_22; GATA TRANSCRIPTION FACTOR 28; GATA28; TIFY2A; ZIM-LIKE 2; ZML2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G0", "url": "https://www.uniprot.org/uniprotkb/Q8H1G0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ELPQAAPPGLGSPHQNNRVS", "down_seq": "LPGTPQRFSIPQRLASLVRF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser134" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "270", "end_pos": "270" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8H1G0-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8H1G0-1.133.133", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8H1G0-1.138.138", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G0-1.138.138", "start_pos": 138, "end_pos": 138, "uniprot_canonical_ac": "Q8H1G0-1", "length": 302, "uniprot_id": "GAT28_ARATH", "protein_name": "GATA transcription factor 28", "refseq_ac": "NP_564593", "refseq_name": "ZIM-LIKE 2", "gene_name": "GATA28", "gene_names_uniprotkb": "GATA28; F19C24.17; F5D21.22; TIFY2A; ZML2", "gene_names_refseq": "F5D21.22; F5D21_22; GATA TRANSCRIPTION FACTOR 28; GATA28; TIFY2A; ZIM-LIKE 2; ZML2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G0", "url": "https://www.uniprot.org/uniprotkb/Q8H1G0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AAPPGLGSPHQNNRVSSLPG", "down_seq": "PQRFSIPQRLASLVRFREKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr138" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "270", "end_pos": "270" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8H1G0-1.125.125", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8H1G0-1.133.133", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8H1G0-1.134.134", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G0-1.267.267", "start_pos": 267, "end_pos": 267, "uniprot_canonical_ac": "Q8H1G0-1", "length": 302, "uniprot_id": "GAT28_ARATH", "protein_name": "GATA transcription factor 28", "refseq_ac": "NP_564593", "refseq_name": "ZIM-LIKE 2", "gene_name": "GATA28", "gene_names_uniprotkb": "GATA28; F19C24.17; F5D21.22; TIFY2A; ZML2", "gene_names_refseq": "F5D21.22; F5D21_22; GATA TRANSCRIPTION FACTOR 28; GATA28; TIFY2A; ZIM-LIKE 2; ZML2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G0", "url": "https://www.uniprot.org/uniprotkb/Q8H1G0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CNACGLMWANKGAFRDLSKA", "down_seq": "PQTAQNLPLNKNEDANLETD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser267" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "270", "end_pos": "270" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8H1G0-1.270.270", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1G0-1.270.270", "start_pos": 270, "end_pos": 270, "uniprot_canonical_ac": "Q8H1G0-1", "length": 302, "uniprot_id": "GAT28_ARATH", "protein_name": "GATA transcription factor 28", "refseq_ac": "NP_564593", "refseq_name": "ZIM-LIKE 2", "gene_name": "GATA28", "gene_names_uniprotkb": "GATA28; F19C24.17; F5D21.22; TIFY2A; ZML2", "gene_names_refseq": "F5D21.22; F5D21_22; GATA TRANSCRIPTION FACTOR 28; GATA28; TIFY2A; ZIM-LIKE 2; ZML2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1G0", "url": "https://www.uniprot.org/uniprotkb/Q8H1G0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] } ], "crossref": [ { "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CGLMWANKGAFRDLSKASPQ", "down_seq": "AQNLPLNKNEDANLETDHQI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1G0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1G0" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ], "site_lbl": "Thr270" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "125", "end_pos": "125" }, { "start_pos": "133", "end_pos": "133" }, { "start_pos": "134", "end_pos": "134" }, { "start_pos": "138", "end_pos": "138" }, { "start_pos": "267", "end_pos": "267" }, { "start_pos": "270", "end_pos": "270" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8H1G0-1.267.267", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8H1R0-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "Q8H1R0-1", "length": 183, "uniprot_id": "PYL10_ARATH", "protein_name": "Abscisic acid receptor PYL10", "refseq_ac": "NP_194521", "refseq_name": "PYR1-like 10", "gene_name": "PYL10", "gene_names_uniprotkb": "PYL10; RCAR4; T13J8.30", "gene_names_refseq": "PYL10; PYR1-like 10; RCAR4; T13J8.30; T13J8_30; regulatory components of ABA receptor 4", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1R0", "url": "https://www.uniprot.org/uniprotkb/Q8H1R0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8H1R0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1R0", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNGDETKKVE", "down_seq": "EYIKKHHRHELVESQCSSTL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8H1R0", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8H1R0" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8L5Z7-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "Q8L5Z7-1", "length": 587, "uniprot_id": "SNX2A_ARATH", "protein_name": "Sorting nexin 2A", "refseq_ac": "NP_200652", "refseq_name": "sorting nexin 2A", "gene_name": "SNX2A", "gene_names_uniprotkb": "SNX2A; MQJ2.4", "gene_names_refseq": "MQJ2.4; MQJ2_4; SNX2a; sorting nexin 2A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" }, { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EINGTEDNSLHSQFSDSLSR", "down_seq": "PSSSSSDYIKITVSNPQKEQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser144" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "55", "end_pos": "55" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8L5Z7-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8L5Z7-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8L5Z7-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8L5Z7-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8L5Z7-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8L5Z7-1.152.152", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L5Z7-1.146.146", "start_pos": 146, "end_pos": 146, "uniprot_canonical_ac": "Q8L5Z7-1", "length": 587, "uniprot_id": "SNX2A_ARATH", "protein_name": "Sorting nexin 2A", "refseq_ac": "NP_200652", "refseq_name": "sorting nexin 2A", "gene_name": "SNX2A", "gene_names_uniprotkb": "SNX2A; MQJ2.4", "gene_names_refseq": "MQJ2.4; MQJ2_4; SNX2a; sorting nexin 2A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" }, { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NGTEDNSLHSQFSDSLSRSP", "down_seq": "SSSSDYIKITVSNPQKEQEI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser146" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "55", "end_pos": "55" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8L5Z7-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8L5Z7-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8L5Z7-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8L5Z7-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8L5Z7-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8L5Z7-1.152.152", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L5Z7-1.147.147", "start_pos": 147, "end_pos": 147, "uniprot_canonical_ac": "Q8L5Z7-1", "length": 587, "uniprot_id": "SNX2A_ARATH", "protein_name": "Sorting nexin 2A", "refseq_ac": "NP_200652", "refseq_name": "sorting nexin 2A", "gene_name": "SNX2A", "gene_names_uniprotkb": "SNX2A; MQJ2.4", "gene_names_refseq": "MQJ2.4; MQJ2_4; SNX2a; sorting nexin 2A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" }, { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTEDNSLHSQFSDSLSRSPS", "down_seq": "SSSDYIKITVSNPQKEQEIS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Ser147" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "55", "end_pos": "55" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8L5Z7-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8L5Z7-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8L5Z7-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8L5Z7-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8L5Z7-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8L5Z7-1.152.152", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L5Z7-1.148.148", "start_pos": 148, "end_pos": 148, "uniprot_canonical_ac": "Q8L5Z7-1", "length": 587, "uniprot_id": "SNX2A_ARATH", "protein_name": "Sorting nexin 2A", "refseq_ac": "NP_200652", "refseq_name": "sorting nexin 2A", "gene_name": "SNX2A", "gene_names_uniprotkb": "SNX2A; MQJ2.4", "gene_names_refseq": "MQJ2.4; MQJ2_4; SNX2a; sorting nexin 2A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" }, { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TEDNSLHSQFSDSLSRSPSS", "down_seq": "SSDYIKITVSNPQKEQEISN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser148" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "55", "end_pos": "55" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q8L5Z7-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8L5Z7-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8L5Z7-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8L5Z7-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8L5Z7-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8L5Z7-1.152.152", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L5Z7-1.149.149", "start_pos": 149, "end_pos": 149, "uniprot_canonical_ac": "Q8L5Z7-1", "length": 587, "uniprot_id": "SNX2A_ARATH", "protein_name": "Sorting nexin 2A", "refseq_ac": "NP_200652", "refseq_name": "sorting nexin 2A", "gene_name": "SNX2A", "gene_names_uniprotkb": "SNX2A; MQJ2.4", "gene_names_refseq": "MQJ2.4; MQJ2_4; SNX2a; sorting nexin 2A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" }, { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDNSLHSQFSDSLSRSPSSS", "down_seq": "SDYIKITVSNPQKEQEISNS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser149" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "55", "end_pos": "55" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8L5Z7-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8L5Z7-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8L5Z7-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8L5Z7-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8L5Z7-1.150.150", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8L5Z7-1.152.152", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L5Z7-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "Q8L5Z7-1", "length": 587, "uniprot_id": "SNX2A_ARATH", "protein_name": "Sorting nexin 2A", "refseq_ac": "NP_200652", "refseq_name": "sorting nexin 2A", "gene_name": "SNX2A", "gene_names_uniprotkb": "SNX2A; MQJ2.4", "gene_names_refseq": "MQJ2.4; MQJ2_4; SNX2a; sorting nexin 2A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" }, { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DNSLHSQFSDSLSRSPSSSS", "down_seq": "DYIKITVSNPQKEQEISNSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser150" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "55", "end_pos": "55" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8L5Z7-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8L5Z7-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8L5Z7-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8L5Z7-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8L5Z7-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8L5Z7-1.152.152", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L5Z7-1.152.152", "start_pos": 152, "end_pos": 152, "uniprot_canonical_ac": "Q8L5Z7-1", "length": 587, "uniprot_id": "SNX2A_ARATH", "protein_name": "Sorting nexin 2A", "refseq_ac": "NP_200652", "refseq_name": "sorting nexin 2A", "gene_name": "SNX2A", "gene_names_uniprotkb": "SNX2A; MQJ2.4", "gene_names_refseq": "MQJ2.4; MQJ2_4; SNX2a; sorting nexin 2A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" }, { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "SLHSQFSDSLSRSPSSSSSD", "down_seq": "IKITVSNPQKEQEISNSIVG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Tyr152" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "55", "end_pos": "55" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8L5Z7-1.144.144", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8L5Z7-1.146.146", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8L5Z7-1.147.147", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8L5Z7-1.148.148", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8L5Z7-1.149.149", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8L5Z7-1.150.150", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L5Z7-1.55.55", "start_pos": 55, "end_pos": 55, "uniprot_canonical_ac": "Q8L5Z7-1", "length": 587, "uniprot_id": "SNX2A_ARATH", "protein_name": "Sorting nexin 2A", "refseq_ac": "NP_200652", "refseq_name": "sorting nexin 2A", "gene_name": "SNX2A", "gene_names_uniprotkb": "SNX2A; MQJ2.4", "gene_names_refseq": "MQJ2.4; MQJ2_4; SNX2a; sorting nexin 2A", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z7", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PLKISDVNGDTSNSGYRSAM", "down_seq": "TLSNVRDPLSPPPTVMIPAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L5Z7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L5Z7" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser55" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "144", "end_pos": "144" }, { "start_pos": "146", "end_pos": "146" }, { "start_pos": "147", "end_pos": "147" }, { "start_pos": "148", "end_pos": "148" }, { "start_pos": "149", "end_pos": "149" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "152", "end_pos": "152" }, { "start_pos": "55", "end_pos": "55" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L6Y4-1.523.523", "start_pos": 523, "end_pos": 523, "uniprot_canonical_ac": "Q8L6Y4-1", "length": 631, "uniprot_id": "EMF2_ARATH", "protein_name": "Polycomb group protein EMBRYONIC FLOWER 2", "refseq_ac": "NP_001119413", "refseq_name": "VEFS-Box of polycomb protein", "gene_name": "EMF2", "gene_names_uniprotkb": "EMF2; MWD22.19", "gene_names_refseq": "AT5G51240; AtEMF2; CYR1; CYTOKININ RESISTANT 1; EMBRYONIC FLOWER 2; EMF2; MWD22.18; MWD22_18; VEF2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L6Y4", "url": "https://www.uniprot.org/uniprotkb/Q8L6Y4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8L6Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L6Y4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8L6Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L6Y4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QKRQFFHSHRAQPMALEQVL", "down_seq": "DRDSEDEVDDDVADFEDRRM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L6Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L6Y4" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser523" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q8L6Y4-1.527.527", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L6Y4-1.527.527", "start_pos": 527, "end_pos": 527, "uniprot_canonical_ac": "Q8L6Y4-1", "length": 631, "uniprot_id": "EMF2_ARATH", "protein_name": "Polycomb group protein EMBRYONIC FLOWER 2", "refseq_ac": "NP_001119413", "refseq_name": "VEFS-Box of polycomb protein", "gene_name": "EMF2", "gene_names_uniprotkb": "EMF2; MWD22.19", "gene_names_refseq": "AT5G51240; AtEMF2; CYR1; CYTOKININ RESISTANT 1; EMBRYONIC FLOWER 2; EMF2; MWD22.18; MWD22_18; VEF2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L6Y4", "url": "https://www.uniprot.org/uniprotkb/Q8L6Y4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8L6Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L6Y4" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8L6Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L6Y4", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FFHSHRAQPMALEQVLSDRD", "down_seq": "EDEVDDDVADFEDRRMLDDF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L6Y4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L6Y4" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser527" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "523", "end_pos": "523" }, { "start_pos": "527", "end_pos": "527" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q8L6Y4-1.523.523", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L925-1.129.129", "start_pos": 129, "end_pos": 129, "uniprot_canonical_ac": "Q8L925-1", "length": 181, "uniprot_id": "CRC_ARATH", "protein_name": "Protein CRABS CLAW", "refseq_ac": "NP_177078", "refseq_name": "Plant-specific transcription factor YABBY family protein", "gene_name": "CRC", "gene_names_uniprotkb": "CRC; F23O10.23; F4N2.14", "gene_names_refseq": "CRABS CLAW; CRC; F4N2.14; F4N2_14; TRANSCRIPTION FACTOR CRC", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L925", "url": "https://www.uniprot.org/uniprotkb/Q8L925" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "CRABS CLAW, a gene that regulates carpel and nectary development in Arabidopsis, encodes a novel protein with zinc finger and helix-loop-helix domains.", "journal": "Development (Cambridge, England)", "date": "1999-06", "authors": "Bowman J L, Smyth D R", "evidence": [ { "database": "UniProtKB", "id": "Q8L925", "url": "https://www.uniprot.org/uniprotkb/Q8L925" } ], "reference": [ { "type": "PubMed", "id": "10225998", "url": "https://glygen.org/publication/PubMed/10225998" } ] } ], "crossref": [ { "id": "Q8L925", "url": "https://www.uniprot.org/uniprotkb/Q8L925", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10225998", "url": "https://glygen.org/publication/PubMed/10225998", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "VKPPEKKQRLPSAYNRFMRD", "down_seq": "IQRIKSANPEIPHREAFSAA", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "K", "comment": "In crc-7; abnormal gynoecium and lack of nectaries.", "evidence": [ { "database": "UniProtKB", "id": "Q8L925", "url": "https://www.uniprot.org/uniprotkb/Q8L925" }, { "database": "PubMed", "id": "10225998", "url": "https://glygen.org/publication/PubMed/10225998" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "129", "end_pos": "129" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L925-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "Q8L925-1", "length": 181, "uniprot_id": "CRC_ARATH", "protein_name": "Protein CRABS CLAW", "refseq_ac": "NP_177078", "refseq_name": "Plant-specific transcription factor YABBY family protein", "gene_name": "CRC", "gene_names_uniprotkb": "CRC; F23O10.23; F4N2.14", "gene_names_refseq": "CRABS CLAW; CRC; F4N2.14; F4N2_14; TRANSCRIPTION FACTOR CRC", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L925", "url": "https://www.uniprot.org/uniprotkb/Q8L925" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8L925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L925" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8L925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L925", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNLEEKPTMTASRA", "down_seq": "PQAEHLYYVRCSICNTILAV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L925", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L925" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "129", "end_pos": "129" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "15", "end_pos": "15" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L9K1-1.168.168", "start_pos": 168, "end_pos": 168, "uniprot_canonical_ac": "Q8L9K1-1", "length": 226, "uniprot_id": "ERF99_ARATH", "protein_name": "Ethylene-responsive transcription factor 13", "refseq_ac": "NP_182011", "refseq_name": "ethylene-responsive element binding factor 13", "gene_name": "ERF13", "gene_names_uniprotkb": "ERF13; ERF-13; ERF099; T13E15.15", "gene_names_refseq": "ATERF13; EREBP; ERF13; ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13; T13E15.15; ethylene-responsive element binding factor 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L9K1", "url": "https://www.uniprot.org/uniprotkb/Q8L9K1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FPHLIGSCKYEPVRIRPRRR", "down_seq": "PEPSVSDQLTSEQKRESHVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser168" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "168", "end_pos": "168" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "207", "end_pos": "207" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q8L9K1-1.174.174", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L9K1-1.16.16", "start_pos": 16, "end_pos": 16, "uniprot_canonical_ac": "Q8L9K1-1", "length": 226, "uniprot_id": "ERF99_ARATH", "protein_name": "Ethylene-responsive transcription factor 13", "refseq_ac": "NP_182011", "refseq_name": "ethylene-responsive element binding factor 13", "gene_name": "ERF13", "gene_names_uniprotkb": "ERF13; ERF-13; ERF099; T13E15.15", "gene_names_refseq": "ATERF13; EREBP; ERF13; ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13; T13E15.15; ethylene-responsive element binding factor 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L9K1", "url": "https://www.uniprot.org/uniprotkb/Q8L9K1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Tyrosine Kinase-Dependent Defense Responses Against Herbivory in Arabidopsis.", "journal": "Frontiers in plant science", "date": "2019", "authors": "Miyamoto Takumi, Uemura Takuya, Nemoto Keiichirou, Daito Maho, Nozawa Akira, Sawasaki Tatsuya, Arimura Gen-Ichiro", "evidence": [ { "database": "iPTMnet", "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1" } ], "reference": [ { "type": "PubMed", "id": "31249583", "url": "https://glygen.org/publication/PubMed/31249583" } ] } ], "crossref": [ { "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "31249583", "url": "https://glygen.org/publication/PubMed/31249583", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MSSSDSVNNGVNSRM", "down_seq": "FRNPSFSNVILNDNWSDLPL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9ZUZ2-1", "kinase_gene_name": "CRK3", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1" }, { "database": "PubMed", "id": "31249583", "url": "https://glygen.org/publication/PubMed/31249583" } ], "site_lbl": "Tyr16" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "168", "end_pos": "168" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "207", "end_pos": "207" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L9K1-1.174.174", "start_pos": 174, "end_pos": 174, "uniprot_canonical_ac": "Q8L9K1-1", "length": 226, "uniprot_id": "ERF99_ARATH", "protein_name": "Ethylene-responsive transcription factor 13", "refseq_ac": "NP_182011", "refseq_name": "ethylene-responsive element binding factor 13", "gene_name": "ERF13", "gene_names_uniprotkb": "ERF13; ERF-13; ERF099; T13E15.15", "gene_names_refseq": "ATERF13; EREBP; ERF13; ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13; T13E15.15; ethylene-responsive element binding factor 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L9K1", "url": "https://www.uniprot.org/uniprotkb/Q8L9K1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SCKYEPVRIRPRRRSPEPSV", "down_seq": "DQLTSEQKRESHVDDGESSL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser174" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "168", "end_pos": "168" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "207", "end_pos": "207" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8L9K1-1.168.168", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8L9K1-1.207.207", "start_pos": 207, "end_pos": 207, "uniprot_canonical_ac": "Q8L9K1-1", "length": 226, "uniprot_id": "ERF99_ARATH", "protein_name": "Ethylene-responsive transcription factor 13", "refseq_ac": "NP_182011", "refseq_name": "ethylene-responsive element binding factor 13", "gene_name": "ERF13", "gene_names_uniprotkb": "ERF13; ERF-13; ERF099; T13E15.15", "gene_names_refseq": "ATERF13; EREBP; ERF13; ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13; T13E15.15; ethylene-responsive element binding factor 13", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L9K1", "url": "https://www.uniprot.org/uniprotkb/Q8L9K1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Members of the Plant CRK Superfamily Are Capable of Trans- and Autophosphorylation of Tyrosine Residues.", "journal": "The Journal of biological chemistry", "date": "2015-07-03", "authors": "Nemoto Keiichirou, Takemori Nobuaki, Seki Motoaki, Shinozaki Kazuo, Sawasaki Tatsuya", "evidence": [ { "database": "iPTMnet", "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1" } ], "reference": [ { "type": "PubMed", "id": "25969537", "url": "https://glygen.org/publication/PubMed/25969537" } ] }, { "title": "Tyrosine Kinase-Dependent Defense Responses Against Herbivory in Arabidopsis.", "journal": "Frontiers in plant science", "date": "2019", "authors": "Miyamoto Takumi, Uemura Takuya, Nemoto Keiichirou, Daito Maho, Nozawa Akira, Sawasaki Tatsuya, Arimura Gen-Ichiro", "evidence": [ { "database": "iPTMnet", "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1" } ], "reference": [ { "type": "PubMed", "id": "31249583", "url": "https://glygen.org/publication/PubMed/31249583" } ] } ], "crossref": [ { "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25969537", "url": "https://glygen.org/publication/PubMed/25969537", "database": "PubMed", "categories": [ "Other" ] }, { "id": "31249583", "url": "https://glygen.org/publication/PubMed/31249583", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "VDDGESSLVVPELDFTVDQF", "down_seq": "FDGSLLMDQSECSYSDNRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "Q9ZUZ2-1", "kinase_gene_name": "CRK3", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8L9K1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8L9K1" }, { "database": "PubMed", "id": "25969537", "url": "https://glygen.org/publication/PubMed/25969537" }, { "database": "PubMed", "id": "31249583", "url": "https://glygen.org/publication/PubMed/31249583" } ], "site_lbl": "Tyr207" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "168", "end_pos": "168" }, { "start_pos": "16", "end_pos": "16" }, { "start_pos": "174", "end_pos": "174" }, { "start_pos": "207", "end_pos": "207" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LAS7-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "Q8LAS7-1", "length": 226, "uniprot_id": "CNBL2_ARATH", "protein_name": "Calcineurin B-like protein 2", "refseq_ac": "NP_001332655", "refseq_name": "calcineurin B-like protein 2", "gene_name": "CBL2", "gene_names_uniprotkb": "CBL2; MDA7.3; SCABP1", "gene_names_refseq": "ATCBL2; CBL2; MDA7.3; MDA7_3; SCaBP1; SOS3-LIKE CALCIUM BINDING PROTEIN 1; calcineurin B-like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The crystal structure of plant-specific calcium-binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14.", "journal": "Journal of molecular biology", "date": "2008-03-14", "authors": "Akaboshi Mayuko, Hashimoto Hiroshi, Ishida Hanako, Saijo Shinya, Koizumi Nozomu, Sato Mamoru, Shimizu Toshiyuki", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745" } ] } ], "crossref": [ { "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "FADRVFDLFDTKHNGILGFE", "down_seq": "FARALSVFHPNAPIDDKIHF", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "No effect on binding to CIPK14.", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "PubMed", "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LAS7-1.12.12", "start_pos": 12, "end_pos": 12, "uniprot_canonical_ac": "Q8LAS7-1", "length": 226, "uniprot_id": "CNBL2_ARATH", "protein_name": "Calcineurin B-like protein 2", "refseq_ac": "NP_001332655", "refseq_name": "calcineurin B-like protein 2", "gene_name": "CBL2", "gene_names_uniprotkb": "CBL2; MDA7.3; SCABP1", "gene_names_refseq": "ATCBL2; CBL2; MDA7.3; MDA7_3; SCaBP1; SOS3-LIKE CALCIUM BINDING PROTEIN 1; calcineurin B-like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "S-acylation-dependent association of the calcium sensor CBL2 with the vacuolar membrane is essential for proper abscisic acid responses.", "journal": "Cell research", "date": "2012-07", "authors": "Batisti\u010d Oliver, Rehers Marion, Akerman Amir, Schl\u00fccking Kathrin, Steinhorst Leonie, Yalovsky Shaul, Kudla J\u00f6rg", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024" } ] } ], "crossref": [ { "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "MSQCVDGIKHL", "down_seq": "TSVLGCFDLDLYKQSGGLGD", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Decreased tonoplast targeting. Loss of tonoplast targeting; when associated with S-18. Loss of tonoplast targeting; when associated with S-4 and S-18.", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "PubMed", "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8LAS7-1.3.3", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8LAS7-1.4.4", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8LAS7-1.18.18", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LAS7-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "Q8LAS7-1", "length": 226, "uniprot_id": "CNBL2_ARATH", "protein_name": "Calcineurin B-like protein 2", "refseq_ac": "NP_001332655", "refseq_name": "calcineurin B-like protein 2", "gene_name": "CBL2", "gene_names_uniprotkb": "CBL2; MDA7.3; SCABP1", "gene_names_refseq": "ATCBL2; CBL2; MDA7.3; MDA7_3; SCaBP1; SOS3-LIKE CALCIUM BINDING PROTEIN 1; calcineurin B-like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The crystal structure of plant-specific calcium-binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14.", "journal": "Journal of molecular biology", "date": "2008-03-14", "authors": "Akaboshi Mayuko, Hashimoto Hiroshi, Ishida Hanako, Saijo Shinya, Koizumi Nozomu, Sato Mamoru, Shimizu Toshiyuki", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745" } ] } ], "crossref": [ { "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "KIHFSFQLYDLKQQGFIERQ", "down_seq": "VKQMVVATLAESGMNLKDTV", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "No effect on binding to CIPK14.", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "PubMed", "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LAS7-1.187.187", "start_pos": 187, "end_pos": 187, "uniprot_canonical_ac": "Q8LAS7-1", "length": 226, "uniprot_id": "CNBL2_ARATH", "protein_name": "Calcineurin B-like protein 2", "refseq_ac": "NP_001332655", "refseq_name": "calcineurin B-like protein 2", "gene_name": "CBL2", "gene_names_uniprotkb": "CBL2; MDA7.3; SCABP1", "gene_names_refseq": "ATCBL2; CBL2; MDA7.3; MDA7_3; SCaBP1; SOS3-LIKE CALCIUM BINDING PROTEIN 1; calcineurin B-like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The crystal structure of plant-specific calcium-binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14.", "journal": "Journal of molecular biology", "date": "2008-03-14", "authors": "Akaboshi Mayuko, Hashimoto Hiroshi, Ishida Hanako, Saijo Shinya, Koizumi Nozomu, Sato Mamoru, Shimizu Toshiyuki", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745" } ] } ], "crossref": [ { "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "IIDKTFEEADTKHDGKIDKE", "down_seq": "WRSLVLRHPSLLKNMTLQYL", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "No effect on binding to CIPK14.", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "PubMed", "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LAS7-1.18.18", "start_pos": 18, "end_pos": 18, "uniprot_canonical_ac": "Q8LAS7-1", "length": 226, "uniprot_id": "CNBL2_ARATH", "protein_name": "Calcineurin B-like protein 2", "refseq_ac": "NP_001332655", "refseq_name": "calcineurin B-like protein 2", "gene_name": "CBL2", "gene_names_uniprotkb": "CBL2; MDA7.3; SCABP1", "gene_names_refseq": "ATCBL2; CBL2; MDA7.3; MDA7_3; SCaBP1; SOS3-LIKE CALCIUM BINDING PROTEIN 1; calcineurin B-like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "S-acylation-dependent association of the calcium sensor CBL2 with the vacuolar membrane is essential for proper abscisic acid responses.", "journal": "Cell research", "date": "2012-07", "authors": "Batisti\u010d Oliver, Rehers Marion, Akerman Amir, Schl\u00fccking Kathrin, Steinhorst Leonie, Yalovsky Shaul, Kudla J\u00f6rg", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024" } ] } ], "crossref": [ { "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "MSQCVDGIKHLCTSVLG", "down_seq": "FDLDLYKQSGGLGDPELLAR", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of tonoplast targeting. Loss of tonoplast targeting; when associated with S-12. Loss of tonoplast targeting; when associated with S-4 and S-12.", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "PubMed", "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q8LAS7-1.3.3", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q8LAS7-1.4.4", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8LAS7-1.12.12", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LAS7-1.216.216", "start_pos": 216, "end_pos": 216, "uniprot_canonical_ac": "Q8LAS7-1", "length": 226, "uniprot_id": "CNBL2_ARATH", "protein_name": "Calcineurin B-like protein 2", "refseq_ac": "NP_001332655", "refseq_name": "calcineurin B-like protein 2", "gene_name": "CBL2", "gene_names_uniprotkb": "CBL2; MDA7.3; SCABP1", "gene_names_refseq": "ATCBL2; CBL2; MDA7.3; MDA7_3; SCaBP1; SOS3-LIKE CALCIUM BINDING PROTEIN 1; calcineurin B-like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation of SOS3-like calcium-binding proteins by their interacting SOS2-like protein kinases is a common regulatory mechanism in Arabidopsis.", "journal": "Plant physiology", "date": "2011-08", "authors": "Du Wenming, Lin Huixin, Chen She, Wu Yisheng, Zhang Jun, Fuglsang Anja T, Palmgren Michael G, Wu Weihua, Guo Yan", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "iPTMnet", "id": "Q8LAS7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "21685179", "url": "https://glygen.org/publication/PubMed/21685179" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8LAS7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8LAS7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "21685179", "url": "https://glygen.org/publication/PubMed/21685179", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8LAS7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LAS7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8LAS7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q8LAS7", "database": "PRO", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PSLLKNMTLQYLKDITTTFP", "down_seq": "FVFHSQVEDT", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "PubMed", "id": "21685179", "url": "https://glygen.org/publication/PubMed/21685179" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Increased interaction with CIPK11.", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "PubMed", "id": "21685179", "url": "https://glygen.org/publication/PubMed/21685179" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CIPK11 and CIPK14", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "iPTMnet", "id": "Q8LAS7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LAS7" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PRO", "id": "Q8LAS7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q8LAS7" }, { "database": "PubMed", "id": "21685179", "url": "https://glygen.org/publication/PubMed/21685179" } ], "site_lbl": "Ser216" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LAS7-1.3.3", "start_pos": 3, "end_pos": 3, "uniprot_canonical_ac": "Q8LAS7-1", "length": 226, "uniprot_id": "CNBL2_ARATH", "protein_name": "Calcineurin B-like protein 2", "refseq_ac": "NP_001332655", "refseq_name": "calcineurin B-like protein 2", "gene_name": "CBL2", "gene_names_uniprotkb": "CBL2; MDA7.3; SCABP1", "gene_names_refseq": "ATCBL2; CBL2; MDA7.3; MDA7_3; SCaBP1; SOS3-LIKE CALCIUM BINDING PROTEIN 1; calcineurin B-like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "S-acylation-dependent association of the calcium sensor CBL2 with the vacuolar membrane is essential for proper abscisic acid responses.", "journal": "Cell research", "date": "2012-07", "authors": "Batisti\u010d Oliver, Rehers Marion, Akerman Amir, Schl\u00fccking Kathrin, Steinhorst Leonie, Yalovsky Shaul, Kudla J\u00f6rg", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024" } ] } ], "crossref": [ { "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Q", "start_aa": "Q", "up_seq": "MS", "down_seq": "CVDGIKHLCTSVLGCFDLDL", "mutagenesis": [ { "sequence_org": "Q", "sequence_mut": "E", "comment": "No effect on tonoplast targeting.", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "PubMed", "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8LAS7-1.4.4", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8LAS7-1.12.12", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q8LAS7-1.18.18", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LAS7-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q8LAS7-1", "length": 226, "uniprot_id": "CNBL2_ARATH", "protein_name": "Calcineurin B-like protein 2", "refseq_ac": "NP_001332655", "refseq_name": "calcineurin B-like protein 2", "gene_name": "CBL2", "gene_names_uniprotkb": "CBL2; MDA7.3; SCABP1", "gene_names_refseq": "ATCBL2; CBL2; MDA7.3; MDA7_3; SCaBP1; SOS3-LIKE CALCIUM BINDING PROTEIN 1; calcineurin B-like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "S-acylation-dependent association of the calcium sensor CBL2 with the vacuolar membrane is essential for proper abscisic acid responses.", "journal": "Cell research", "date": "2012-07", "authors": "Batisti\u010d Oliver, Rehers Marion, Akerman Amir, Schl\u00fccking Kathrin, Steinhorst Leonie, Yalovsky Shaul, Kudla J\u00f6rg", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024" } ] } ], "crossref": [ { "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "C", "start_aa": "C", "up_seq": "MSQ", "down_seq": "VDGIKHLCTSVLGCFDLDLY", "mutagenesis": [ { "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of tonoplast targeting. Loss of tonoplast targeting; when associated with S-12 and S-18.", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "PubMed", "id": "22547024", "url": "https://glygen.org/publication/PubMed/22547024" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8LAS7-1.3.3", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8LAS7-1.12.12", "categories": [ "mutagenesis_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8LAS7-1.18.18", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LAS7-1.71.71", "start_pos": 71, "end_pos": 71, "uniprot_canonical_ac": "Q8LAS7-1", "length": 226, "uniprot_id": "CNBL2_ARATH", "protein_name": "Calcineurin B-like protein 2", "refseq_ac": "NP_001332655", "refseq_name": "calcineurin B-like protein 2", "gene_name": "CBL2", "gene_names_uniprotkb": "CBL2; MDA7.3; SCABP1", "gene_names_refseq": "ATCBL2; CBL2; MDA7.3; MDA7_3; SCaBP1; SOS3-LIKE CALCIUM BINDING PROTEIN 1; calcineurin B-like protein 2", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The crystal structure of plant-specific calcium-binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14.", "journal": "Journal of molecular biology", "date": "2008-03-14", "authors": "Akaboshi Mayuko, Hashimoto Hiroshi, Ishida Hanako, Saijo Shinya, Koizumi Nozomu, Sato Mamoru, Shimizu Toshiyuki", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "reference": [ { "type": "PubMed", "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745" } ] } ], "crossref": [ { "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "YELFKKISSAVIDDGLINKE", "down_seq": "FQLALFKTNKKESLFADRVF", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "No effect on binding to CIPK14.", "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" }, { "database": "PubMed", "id": "18237745", "url": "https://glygen.org/publication/PubMed/18237745" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "12", "end_pos": "12" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "187", "end_pos": "187" }, { "start_pos": "18", "end_pos": "18" }, { "start_pos": "216", "end_pos": "216" }, { "start_pos": "3", "end_pos": "3" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "71", "end_pos": "71" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "216", "end_pos": "216" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LGD5-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "Q8LGD5-1", "length": 222, "uniprot_id": "MKS1_ARATH", "protein_name": "Protein MKS1", "refseq_ac": "NP_566616", "refseq_name": "MAP kinase substrate 1", "gene_name": "MKS1", "gene_names_uniprotkb": "MKS1; MVE11.5; VQ21", "gene_names_refseq": "MAP kinase substrate 1; MKS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation sites of Arabidopsis MAP kinase substrate 1 (MKS1).", "journal": "Biochimica et biophysica acta", "date": "2007-09", "authors": "Caspersen Mikael B, Qiu Jin-Long, Zhang Xumin, Andreasson Erik, Naested Henrik, Mundy John, Svensson Birte", "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" }, { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "17702678", "url": "https://glygen.org/publication/PubMed/17702678" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] }, { "title": "Arabidopsis MKS1 is involved in basal immunity and requires an intact N-terminal domain for proper function.", "journal": "PloS one", "date": "2010-12-28", "authors": "Petersen Klaus, Qiu Jin-Long, L\u00fctje Juri, Fiil Berthe Katrine, Hansen Sidsel, Mundy John, Petersen Morten", "evidence": [ { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436" } ] } ], "crossref": [ { "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17702678", "url": "https://glygen.org/publication/PubMed/17702678", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QRLTGISSGVFLESGGGGDV", "down_seq": "PAARLASTENASPRGGKEPA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" }, { "database": "PubMed", "id": "17702678", "url": "https://glygen.org/publication/PubMed/17702678" }, { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" }, { "database": "PubMed", "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436" } ], "site_lbl": "Ser108" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "upstream", "id": "Q8LGD5-1.120.120", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LGD5-1.120.120", "start_pos": 120, "end_pos": 120, "uniprot_canonical_ac": "Q8LGD5-1", "length": 222, "uniprot_id": "MKS1_ARATH", "protein_name": "Protein MKS1", "refseq_ac": "NP_566616", "refseq_name": "MAP kinase substrate 1", "gene_name": "MKS1", "gene_names_uniprotkb": "MKS1; MVE11.5; VQ21", "gene_names_refseq": "MAP kinase substrate 1; MKS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" }, { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphorylation sites of Arabidopsis MAP kinase substrate 1 (MKS1).", "journal": "Biochimica et biophysica acta", "date": "2007-09", "authors": "Caspersen Mikael B, Qiu Jin-Long, Zhang Xumin, Andreasson Erik, Naested Henrik, Mundy John, Svensson Birte", "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" }, { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "17702678", "url": "https://glygen.org/publication/PubMed/17702678" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Arabidopsis MKS1 is involved in basal immunity and requires an intact N-terminal domain for proper function.", "journal": "PloS one", "date": "2010-12-28", "authors": "Petersen Klaus, Qiu Jin-Long, L\u00fctje Juri, Fiil Berthe Katrine, Hansen Sidsel, Mundy John, Petersen Morten", "evidence": [ { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436" } ] } ], "crossref": [ { "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17702678", "url": "https://glygen.org/publication/PubMed/17702678", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESGGGGDVSPAARLASTENA", "down_seq": "PRGGKEPAARDETVEINTAM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "17702678", "url": "https://glygen.org/publication/PubMed/17702678" }, { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436" } ], "site_lbl": "Ser120" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q8LGD5-1.108.108", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LGD5-1.30.30", "start_pos": 30, "end_pos": 30, "uniprot_canonical_ac": "Q8LGD5-1", "length": 222, "uniprot_id": "MKS1_ARATH", "protein_name": "Protein MKS1", "refseq_ac": "NP_566616", "refseq_name": "MAP kinase substrate 1", "gene_name": "MKS1", "gene_names_uniprotkb": "MKS1; MVE11.5; VQ21", "gene_names_refseq": "MAP kinase substrate 1; MKS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The MAP kinase substrate MKS1 is a regulator of plant defense responses.", "journal": "The EMBO journal", "date": "2005-07-20", "authors": "Andreasson Erik, Jenkins Thomas, Brodersen Peter, Thorgrimsen Stephan, Petersen Nikolaj H T, Zhu Shijiang, Qiu Jin-Long, Micheelsen Pernille, Rocher Anne, Petersen Morten, Newman Mari-Anne, Bj\u00f8rn Nielsen Henrik, Hirt Heribert, Somssich Imre, Mattsson Ole, Mundy John", "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" }, { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "15990873", "url": "https://glygen.org/publication/PubMed/15990873" } ] }, { "title": "Arabidopsis MKS1 is involved in basal immunity and requires an intact N-terminal domain for proper function.", "journal": "PloS one", "date": "2010-12-28", "authors": "Petersen Klaus, Qiu Jin-Long, L\u00fctje Juri, Fiil Berthe Katrine, Hansen Sidsel, Mundy John, Petersen Morten", "evidence": [ { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436" } ] } ], "crossref": [ { "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15990873", "url": "https://glygen.org/publication/PubMed/15990873", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GNPSDQQNQKRQLQICGPRP", "down_seq": "PLSVHKDSHKIKKPPKHPAP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" }, { "database": "PubMed", "id": "15990873", "url": "https://glygen.org/publication/PubMed/15990873" }, { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" }, { "database": "PubMed", "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436" } ], "site_lbl": "Ser30" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LGD5-1.72.72", "start_pos": 72, "end_pos": 72, "uniprot_canonical_ac": "Q8LGD5-1", "length": 222, "uniprot_id": "MKS1_ARATH", "protein_name": "Protein MKS1", "refseq_ac": "NP_566616", "refseq_name": "MAP kinase substrate 1", "gene_name": "MKS1", "gene_names_uniprotkb": "MKS1; MVE11.5; VQ21", "gene_names_refseq": "MAP kinase substrate 1; MKS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation sites of Arabidopsis MAP kinase substrate 1 (MKS1).", "journal": "Biochimica et biophysica acta", "date": "2007-09", "authors": "Caspersen Mikael B, Qiu Jin-Long, Zhang Xumin, Andreasson Erik, Naested Henrik, Mundy John, Svensson Birte", "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" }, { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "17702678", "url": "https://glygen.org/publication/PubMed/17702678" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Arabidopsis MKS1 is involved in basal immunity and requires an intact N-terminal domain for proper function.", "journal": "PloS one", "date": "2010-12-28", "authors": "Petersen Klaus, Qiu Jin-Long, L\u00fctje Juri, Fiil Berthe Katrine, Hansen Sidsel, Mundy John, Petersen Morten", "evidence": [ { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" } ], "reference": [ { "type": "PubMed", "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436" } ] } ], "crossref": [ { "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "17702678", "url": "https://glygen.org/publication/PubMed/17702678", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PNRDQPPPYIPREPVVIYAV", "down_seq": "PKVVHATASEFMNVVQRLTG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8LGD5", "url": "https://www.uniprot.org/uniprotkb/Q8LGD5" }, { "database": "PubMed", "id": "17702678", "url": "https://glygen.org/publication/PubMed/17702678" }, { "database": "iPTMnet", "id": "Q8LGD5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8LGD5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "21203436", "url": "https://glygen.org/publication/PubMed/21203436" } ], "site_lbl": "Ser72" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "120", "end_pos": "120" }, { "start_pos": "30", "end_pos": "30" }, { "start_pos": "72", "end_pos": "72" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LPQ5-1.108.108", "start_pos": 108, "end_pos": 108, "uniprot_canonical_ac": "Q8LPQ5-1", "length": 1254, "uniprot_id": "BTS_ARATH", "protein_name": "Zinc finger protein BRUTUS", "refseq_ac": "NP_188457", "refseq_name": "zinc finger protein-like protein", "gene_name": "BTS", "gene_names_uniprotkb": "BTS; EMB2454; MIE15.8", "gene_names_refseq": "BRUTUS; BTS; EMB2454; embryo defective 2454", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Iron-binding E3 ligase mediates iron response in plants by targeting basic helix-loop-helix transcription factors.", "journal": "Plant physiology", "date": "2015-01", "authors": "Selote Devarshi, Samira Rozalynne, Matthiadis Anna, Gillikin Jeffrey W, Long Terri A", "evidence": [ { "database": "UniProtKB", "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5" } ], "reference": [ { "type": "PubMed", "id": "25452667", "url": "https://glygen.org/publication/PubMed/25452667" } ] } ], "crossref": [ { "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25452667", "url": "https://glygen.org/publication/PubMed/25452667", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "RLLRERYRFLRSIYKHHCNA", "down_seq": "DEVIFSALDIRVKNVAQTYS", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Loss of sensitivity to iron.", "evidence": [ { "database": "UniProtKB", "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5" }, { "database": "PubMed", "id": "25452667", "url": "https://glygen.org/publication/PubMed/25452667" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LPQ5-1.369.369", "start_pos": 369, "end_pos": 369, "uniprot_canonical_ac": "Q8LPQ5-1", "length": 1254, "uniprot_id": "BTS_ARATH", "protein_name": "Zinc finger protein BRUTUS", "refseq_ac": "NP_188457", "refseq_name": "zinc finger protein-like protein", "gene_name": "BTS", "gene_names_uniprotkb": "BTS; EMB2454; MIE15.8", "gene_names_refseq": "BRUTUS; BTS; EMB2454; embryo defective 2454", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Iron-binding E3 ligase mediates iron response in plants by targeting basic helix-loop-helix transcription factors.", "journal": "Plant physiology", "date": "2015-01", "authors": "Selote Devarshi, Samira Rozalynne, Matthiadis Anna, Gillikin Jeffrey W, Long Terri A", "evidence": [ { "database": "UniProtKB", "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5" } ], "reference": [ { "type": "PubMed", "id": "25452667", "url": "https://glygen.org/publication/PubMed/25452667" } ] } ], "crossref": [ { "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25452667", "url": "https://glygen.org/publication/PubMed/25452667", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "SAFDERLQYIAEVCIFHSLA", "down_seq": "DKIIFPAVDGEFSFSEEHDE", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Loss of sensitivity to iron.", "evidence": [ { "database": "UniProtKB", "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5" }, { "database": "PubMed", "id": "25452667", "url": "https://glygen.org/publication/PubMed/25452667" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LPQ5-1.716.716", "start_pos": 716, "end_pos": 716, "uniprot_canonical_ac": "Q8LPQ5-1", "length": 1254, "uniprot_id": "BTS_ARATH", "protein_name": "Zinc finger protein BRUTUS", "refseq_ac": "NP_188457", "refseq_name": "zinc finger protein-like protein", "gene_name": "BTS", "gene_names_uniprotkb": "BTS; EMB2454; MIE15.8", "gene_names_refseq": "BRUTUS; BTS; EMB2454; embryo defective 2454", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Iron-binding E3 ligase mediates iron response in plants by targeting basic helix-loop-helix transcription factors.", "journal": "Plant physiology", "date": "2015-01", "authors": "Selote Devarshi, Samira Rozalynne, Matthiadis Anna, Gillikin Jeffrey W, Long Terri A", "evidence": [ { "database": "UniProtKB", "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5" } ], "reference": [ { "type": "PubMed", "id": "25452667", "url": "https://glygen.org/publication/PubMed/25452667" } ] } ], "crossref": [ { "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "25452667", "url": "https://glygen.org/publication/PubMed/25452667", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "E", "start_aa": "E", "up_seq": "RQFIGRFHLLWGFYKAHSNA", "down_seq": "DDILFPALESKETLHNVSHS", "mutagenesis": [ { "sequence_org": "E", "sequence_mut": "A", "comment": "Normal sensitivity to iron.", "evidence": [ { "database": "UniProtKB", "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5" }, { "database": "PubMed", "id": "25452667", "url": "https://glygen.org/publication/PubMed/25452667" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "108", "end_pos": "108" }, { "start_pos": "369", "end_pos": "369" }, { "start_pos": "716", "end_pos": "716" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8LPR5-1.312.312", "start_pos": 312, "end_pos": 312, "uniprot_canonical_ac": "Q8LPR5-1", "length": 420, "uniprot_id": "TCP4_ARATH", "protein_name": "Transcription factor TCP4", "refseq_ac": "NP_001189896", "refseq_name": "TCP family transcription factor 4", "gene_name": "TCP4", "gene_names_uniprotkb": "TCP4; K15M2.17; MEE35", "gene_names_refseq": "MEE35; TCP family transcription factor 4; TCP4; maternal effect embryo arrest 35", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LPR5", "url": "https://www.uniprot.org/uniprotkb/Q8LPR5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GGGGGATDTGNGGGFLFAPP", "down_seq": "PSTTSFQPVLGQSQQLYSQR", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr312", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "312", "end_pos": "312" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8RWN5-1.106.106", "start_pos": 106, "end_pos": 106, "uniprot_canonical_ac": "Q8RWN5-1", "length": 310, "uniprot_id": "RZ1C_ARATH", "protein_name": "Glycine-rich RNA-binding protein RZ1C", "refseq_ac": "", "refseq_name": "", "gene_name": "RZ1C", "gene_names_uniprotkb": "RZ1C", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KLGRDDGESHGSRGGRDSGY", "down_seq": "IAGKGSFGGGGGGGGRVGED", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser106" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q8RWN5-1.112.112", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8RWN5-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q8RWN5-1", "length": 310, "uniprot_id": "RZ1C_ARATH", "protein_name": "Glycine-rich RNA-binding protein RZ1C", "refseq_ac": "", "refseq_name": "", "gene_name": "RZ1C", "gene_names_uniprotkb": "RZ1C", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GESHGSRGGRDSGYSIAGKG", "down_seq": "FGGGGGGGGRVGEDECFKCG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser112" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8RWN5-1.106.106", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8RWN5-1.15.15", "start_pos": 15, "end_pos": 15, "uniprot_canonical_ac": "Q8RWN5-1", "length": 310, "uniprot_id": "RZ1C_ARATH", "protein_name": "Glycine-rich RNA-binding protein RZ1C", "refseq_ac": "", "refseq_name": "", "gene_name": "RZ1C", "gene_names_uniprotkb": "RZ1C", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" }, { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" }, { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAAKEGSRIFVGGL", "down_seq": "PEVTDRDLERAFSRFGDILD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser15" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q8RWN5-1.19.19", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8RWN5-1.160.160", "start_pos": 160, "end_pos": 160, "uniprot_canonical_ac": "Q8RWN5-1", "length": 310, "uniprot_id": "RZ1C_ARATH", "protein_name": "Glycine-rich RNA-binding protein RZ1C", "refseq_ac": "", "refseq_name": "", "gene_name": "RZ1C", "gene_names_uniprotkb": "RZ1C", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DCPSAGGGRGGPVGGFSSRA", "down_seq": "AYGGSDGRVDRYADRDRYVD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser160" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q8RWN5-1.165.165", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8RWN5-1.165.165", "start_pos": 165, "end_pos": 165, "uniprot_canonical_ac": "Q8RWN5-1", "length": 310, "uniprot_id": "RZ1C_ARATH", "protein_name": "Glycine-rich RNA-binding protein RZ1C", "refseq_ac": "", "refseq_name": "", "gene_name": "RZ1C", "gene_names_uniprotkb": "RZ1C", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGGRGGPVGGFSSRASAYGG", "down_seq": "DGRVDRYADRDRYVDRERYI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser165" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8RWN5-1.160.160", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8RWN5-1.19.19", "start_pos": 19, "end_pos": 19, "uniprot_canonical_ac": "Q8RWN5-1", "length": 310, "uniprot_id": "RZ1C_ARATH", "protein_name": "Glycine-rich RNA-binding protein RZ1C", "refseq_ac": "", "refseq_name": "", "gene_name": "RZ1C", "gene_names_uniprotkb": "RZ1C", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MAAKEGSRIFVGGLSPEV", "down_seq": "DRDLERAFSRFGDILDCQIM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr19" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q8RWN5-1.15.15", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8RWN5-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "Q8RWN5-1", "length": 310, "uniprot_id": "RZ1C_ARATH", "protein_name": "Glycine-rich RNA-binding protein RZ1C", "refseq_ac": "", "refseq_name": "", "gene_name": "RZ1C", "gene_names_uniprotkb": "RZ1C", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RYIDDRYDGAARYGARDRFD", "down_seq": "REAYIPRDRYASDRYAAPAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser203" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8RWN5-1.259.259", "start_pos": 259, "end_pos": 259, "uniprot_canonical_ac": "Q8RWN5-1", "length": 310, "uniprot_id": "RZ1C_ARATH", "protein_name": "Glycine-rich RNA-binding protein RZ1C", "refseq_ac": "", "refseq_name": "", "gene_name": "RZ1C", "gene_names_uniprotkb": "RZ1C", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PPGSYDKARSFERDIAPSAG", "down_seq": "DRYGGGRAGGPIRGGGEEGR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser259" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8RWN5-1.293.293", "start_pos": 293, "end_pos": 293, "uniprot_canonical_ac": "Q8RWN5-1", "length": 310, "uniprot_id": "RZ1C_ARATH", "protein_name": "Glycine-rich RNA-binding protein RZ1C", "refseq_ac": "", "refseq_name": "", "gene_name": "RZ1C", "gene_names_uniprotkb": "RZ1C", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GGGEEGRGFRSRAGAPYERP", "down_seq": "RSGGGGAYPSSSTFDRY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser293" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8RWN5-1.295.295", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8RWN5-1.295.295", "start_pos": 295, "end_pos": 295, "uniprot_canonical_ac": "Q8RWN5-1", "length": 310, "uniprot_id": "RZ1C_ARATH", "protein_name": "Glycine-rich RNA-binding protein RZ1C", "refseq_ac": "", "refseq_name": "", "gene_name": "RZ1C", "gene_names_uniprotkb": "RZ1C", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" }, { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GEEGRGFRSRAGAPYERPSR", "down_seq": "GGGGAYPSSSTFDRY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8RWN5", "url": "https://www.uniprot.org/uniprotkb/Q8RWN5" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "iPTMnet", "id": "Q8RWN5", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8RWN5" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser295" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "106", "end_pos": "106" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "15", "end_pos": "15" }, { "start_pos": "160", "end_pos": "160" }, { "start_pos": "165", "end_pos": "165" }, { "start_pos": "19", "end_pos": "19" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "259", "end_pos": "259" }, { "start_pos": "293", "end_pos": "293" }, { "start_pos": "295", "end_pos": "295" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8RWN5-1.293.293", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S4Q6-1.14.14", "start_pos": 14, "end_pos": 14, "uniprot_canonical_ac": "Q8S4Q6-1", "length": 202, "uniprot_id": "FHY1_ARATH", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 1", "refseq_ac": "NP_001078018", "refseq_name": "far-red elongated hypocotyl 1", "gene_name": "FHY1", "gene_names_uniprotkb": "FHY1; F13M22; PAT3", "gene_names_refseq": "FAR-RED ELONGATED HYPOCOTYL 1; FHY1; FRY1; PAT3; PHYTOCHROME A SIGNAL TRANSDUCTION 3; far-red elongated hypocotyl 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation of FAR-RED ELONGATED HYPOCOTYL1 is a key mechanism defining signaling dynamics of phytochrome A under red and far-red light in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Chen Fang, Shi Xiarong, Chen Liang, Dai Mingqiu, Zhou Zhenzhen, Shen Yunping, Li Jigang, Li Gang, Wei Ning, Deng Xing Wang", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "iPTMnet", "id": "Q8S4Q6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S4Q6" } ], "reference": [ { "type": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" } ] } ], "crossref": [ { "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MPEVEVDNNNEKP", "down_seq": "EINSFHHMIISSSKNVLKME", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Normal red light induced phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "39", "end_pos": "39" }, { "start_pos": "61", "end_pos": "61" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S4Q6-1.39.39", "start_pos": 39, "end_pos": 39, "uniprot_canonical_ac": "Q8S4Q6-1", "length": 202, "uniprot_id": "FHY1_ARATH", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 1", "refseq_ac": "NP_001078018", "refseq_name": "far-red elongated hypocotyl 1", "gene_name": "FHY1", "gene_names_uniprotkb": "FHY1; F13M22; PAT3", "gene_names_refseq": "FAR-RED ELONGATED HYPOCOTYL 1; FHY1; FRY1; PAT3; PHYTOCHROME A SIGNAL TRANSDUCTION 3; far-red elongated hypocotyl 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation of FAR-RED ELONGATED HYPOCOTYL1 is a key mechanism defining signaling dynamics of phytochrome A under red and far-red light in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Chen Fang, Shi Xiarong, Chen Liang, Dai Mingqiu, Zhou Zhenzhen, Shen Yunping, Li Jigang, Li Gang, Wei Ning, Deng Xing Wang", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "iPTMnet", "id": "Q8S4Q6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S4Q6" } ], "reference": [ { "type": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" } ] } ], "crossref": [ { "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8S4Q6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S4Q6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FHHMIISSSKNVLKMEEVEV", "down_seq": "KKRKFQTDQSDELSLLPLSK", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced red light (R) induced phosphorylation. Abnormal persistent nuclear localization after R and far red illumination; when associated with A-61.", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" } ] }, { "sequence_org": "S", "sequence_mut": "D", "comment": "Phosphorylation mimic mutant unable to respond to far red light (FR) and to fulfill associated FR responses thus leading to very long hypocotyl, altered anthocyanin accumulation and closed cotyledons, abnormal constitutive subcellular localization in cytoplasm and impaired chromatin binding at direct target genes; when associated with D-61.", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" }, { "database": "iPTMnet", "id": "Q8S4Q6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S4Q6" } ], "site_lbl": "Ser39" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "39", "end_pos": "39" }, { "start_pos": "61", "end_pos": "61" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "upstream", "id": "Q8S4Q6-1.49.49", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S4Q6-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "Q8S4Q6-1", "length": 202, "uniprot_id": "FHY1_ARATH", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 1", "refseq_ac": "NP_001078018", "refseq_name": "far-red elongated hypocotyl 1", "gene_name": "FHY1", "gene_names_uniprotkb": "FHY1; F13M22; PAT3", "gene_names_refseq": "FAR-RED ELONGATED HYPOCOTYL 1; FHY1; FRY1; PAT3; PHYTOCHROME A SIGNAL TRANSDUCTION 3; far-red elongated hypocotyl 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation of FAR-RED ELONGATED HYPOCOTYL1 is a key mechanism defining signaling dynamics of phytochrome A under red and far-red light in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Chen Fang, Shi Xiarong, Chen Liang, Dai Mingqiu, Zhou Zhenzhen, Shen Yunping, Li Jigang, Li Gang, Wei Ning, Deng Xing Wang", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "iPTMnet", "id": "Q8S4Q6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S4Q6" } ], "reference": [ { "type": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" } ] } ], "crossref": [ { "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NVLKMEEVEVSKKRKFQTDQ", "down_seq": "DELSLLPLSKHTCFANVACS", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Normal red light induced phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "39", "end_pos": "39" }, { "start_pos": "61", "end_pos": "61" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8S4Q6-1.39.39", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q8S4Q6-1.61.61", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8S4Q6-1.61.61", "start_pos": 61, "end_pos": 61, "uniprot_canonical_ac": "Q8S4Q6-1", "length": 202, "uniprot_id": "FHY1_ARATH", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 1", "refseq_ac": "NP_001078018", "refseq_name": "far-red elongated hypocotyl 1", "gene_name": "FHY1", "gene_names_uniprotkb": "FHY1; F13M22; PAT3", "gene_names_refseq": "FAR-RED ELONGATED HYPOCOTYL 1; FHY1; FRY1; PAT3; PHYTOCHROME A SIGNAL TRANSDUCTION 3; far-red elongated hypocotyl 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphorylation of FAR-RED ELONGATED HYPOCOTYL1 is a key mechanism defining signaling dynamics of phytochrome A under red and far-red light in Arabidopsis.", "journal": "The Plant cell", "date": "2012-05", "authors": "Chen Fang, Shi Xiarong, Chen Liang, Dai Mingqiu, Zhou Zhenzhen, Shen Yunping, Li Jigang, Li Gang, Wei Ning, Deng Xing Wang", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "iPTMnet", "id": "Q8S4Q6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S4Q6" } ], "reference": [ { "type": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" } ] } ], "crossref": [ { "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8S4Q6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S4Q6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KRKFQTDQSDELSLLPLSKH", "down_seq": "CFANVACSENTNGNSEIDTE", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Impaired red light induced phosphorylation. Abnormal persistent nuclear localization after R and far red illumination; when associated with A-39.", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Phosphorylation mimic mutant unable to respond to far red light (FR) and to fulfill associated FR responses thus leading to very long hypocotyl, altered anthocyanin accumulation and closed cotyledons, abnormal constitutive subcellular localization in cytoplasm and impaired chromatin binding at direct target genes; when associated with S-39.", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" }, { "database": "PubMed", "id": "22582101", "url": "https://glygen.org/publication/PubMed/22582101" }, { "database": "iPTMnet", "id": "Q8S4Q6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8S4Q6" } ], "site_lbl": "Thr61" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "14", "end_pos": "14" }, { "start_pos": "39", "end_pos": "39" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "61", "end_pos": "61" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "39", "end_pos": "39" }, { "start_pos": "61", "end_pos": "61" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q8S4Q6-1.49.49", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VYT3-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GLSESIGNLTNLRQVSLQNN", "down_seq": "ISGKIPPELGFLPKLQTLDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "Q8VYT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8VYT3-1.99.99", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.158.158", "start_pos": 158, "end_pos": 158, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGDIPVSIDQLSSLQYLRLN", "down_seq": "NSLSGPFPASLSQIPHLSFL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn158", "evidence": [ { "id": "Q8VYT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.184.184", "start_pos": 184, "end_pos": 184, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PFPASLSQIPHLSFLDLSYN", "down_seq": "LSGPVPKFPARTFNVAGNPL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn184", "evidence": [ { "id": "Q8VYT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VIGLGAPSQSLSGGLSESIG", "down_seq": "LTNLRQVSLQNNNISGKIPP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn99", "evidence": [ { "id": "Q8VYT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q8VYT3-1.112.112", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.300.300", "start_pos": 300, "end_pos": 300, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EGLQGLGNLRSFTFRELHVY", "down_seq": "DGFSSKNILGAGGFGNVYRG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "site_lbl": "Thr300" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.326.326", "start_pos": 326, "end_pos": 326, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KNILGAGGFGNVYRGKLGDG", "down_seq": "MVAVKRLKDINGTSGDSQFR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "site_lbl": "Thr326" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.384.384", "start_pos": 384, "end_pos": 384, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IGYCATSGERLLVYPYMPNG", "down_seq": "VASKLKSKPALDWNMRKRIA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "site_lbl": "Ser384" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8VYT3-1.387.387", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.387.387", "start_pos": 387, "end_pos": 387, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CATSGERLLVYPYMPNGSVA", "down_seq": "KLKSKPALDWNMRKRIAIGA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "site_lbl": "Ser387" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8VYT3-1.384.384", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.456.456", "start_pos": 456, "end_pos": 456, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ECFEAVVGDFGLAKLLNHAD", "down_seq": "HVTTAVRGTVGHIAPEYLST", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser456" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8VYT3-1.459.459", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8VYT3-1.460.460", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8VYT3-1.465.465", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q8VYT3-1.473.473", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q8VYT3-1.475.475", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8VYT3-1.476.476", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VYT3-1.459.459", "start_pos": 459, "end_pos": 459, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EAVVGDFGLAKLLNHADSHV", "down_seq": "TAVRGTVGHIAPEYLSTGQS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" }, { "database": "iPTMnet", "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr459" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8VYT3-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8VYT3-1.460.460", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8VYT3-1.465.465", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8VYT3-1.473.473", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q8VYT3-1.475.475", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q8VYT3-1.476.476", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VYT3-1.460.460", "start_pos": 460, "end_pos": 460, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AVVGDFGLAKLLNHADSHVT", "down_seq": "AVRGTVGHIAPEYLSTGQSS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" }, { "database": "iPTMnet", "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr460" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q8VYT3-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8VYT3-1.459.459", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8VYT3-1.465.465", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q8VYT3-1.473.473", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q8VYT3-1.475.475", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q8VYT3-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8VYT3-1.480.480", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VYT3-1.465.465", "start_pos": 465, "end_pos": 465, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FGLAKLLNHADSHVTTAVRG", "down_seq": "VGHIAPEYLSTGQSSEKTDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" }, { "database": "iPTMnet", "id": "Q8VYT3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYT3" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Thr465" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8VYT3-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8VYT3-1.459.459", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8VYT3-1.460.460", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8VYT3-1.473.473", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8VYT3-1.475.475", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q8VYT3-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q8VYT3-1.480.480", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VYT3-1.473.473", "start_pos": 473, "end_pos": 473, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HADSHVTTAVRGTVGHIAPE", "down_seq": "LSTGQSSEKTDVFGFGILLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "site_lbl": "Tyr473" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q8VYT3-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q8VYT3-1.459.459", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q8VYT3-1.460.460", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8VYT3-1.465.465", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8VYT3-1.475.475", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8VYT3-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8VYT3-1.480.480", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.475.475", "start_pos": 475, "end_pos": 475, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DSHVTTAVRGTVGHIAPEYL", "down_seq": "TGQSSEKTDVFGFGILLLEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "site_lbl": "Ser475" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8VYT3-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q8VYT3-1.459.459", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q8VYT3-1.460.460", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q8VYT3-1.465.465", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8VYT3-1.473.473", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8VYT3-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8VYT3-1.480.480", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.476.476", "start_pos": 476, "end_pos": 476, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SHVTTAVRGTVGHIAPEYLS", "down_seq": "GQSSEKTDVFGFGILLLELI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "site_lbl": "Thr476" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8VYT3-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q8VYT3-1.459.459", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q8VYT3-1.460.460", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q8VYT3-1.465.465", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8VYT3-1.473.473", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8VYT3-1.475.475", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8VYT3-1.480.480", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.480.480", "start_pos": 480, "end_pos": 480, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TAVRGTVGHIAPEYLSTGQS", "down_seq": "EKTDVFGFGILLLELITGLR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "site_lbl": "Ser480" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8VYT3-1.460.460", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q8VYT3-1.465.465", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q8VYT3-1.473.473", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8VYT3-1.475.475", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8VYT3-1.476.476", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYT3-1.555.555", "start_pos": 555, "end_pos": 555, "uniprot_canonical_ac": "Q8VYT3-1", "length": 648, "uniprot_id": "CIK3_ARATH", "protein_name": "Protein CLAVATA3 INSENSITIVE RECEPTOR KINASE 3", "refseq_ac": "NP_194781", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "CIK3", "gene_names_uniprotkb": "CIK3; F17I23_140; SARK", "gene_names_refseq": "F17I23.140; F17I23_140; SARK; SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LGTNYDKIEVGEMLQVALLC", "down_seq": "QYLPAHRPKMSEVVLMLEGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8VYT3", "url": "https://www.uniprot.org/uniprotkb/Q8VYT3" } ], "site_lbl": "Thr555" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "112", "end_pos": "112" }, { "start_pos": "158", "end_pos": "158" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "300", "end_pos": "300" }, { "start_pos": "326", "end_pos": "326" }, { "start_pos": "384", "end_pos": "384" }, { "start_pos": "387", "end_pos": "387" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "460", "end_pos": "460" }, { "start_pos": "465", "end_pos": "465" }, { "start_pos": "473", "end_pos": "473" }, { "start_pos": "475", "end_pos": "475" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "480", "end_pos": "480" }, { "start_pos": "555", "end_pos": "555" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VYW1-1.584.584", "start_pos": 584, "end_pos": 584, "uniprot_canonical_ac": "Q8VYW1-1", "length": 741, "uniprot_id": "PAPS4_ARATH", "protein_name": "Nuclear poly(A) polymerase 4", "refseq_ac": "NP_001031778", "refseq_name": "nuclear poly(a) polymerase", "gene_name": "PAPS4", "gene_names_uniprotkb": "PAPS4; NPAP; T16I18.60", "gene_names_refseq": "PAP(IV); PAPS4; nPAP; nuclear poly(a) polymerase; poly(A) polymerase 4; poly(A) polymerase IV", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYW1", "url": "https://www.uniprot.org/uniprotkb/Q8VYW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8VYW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYW1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q8VYW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYW1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ENSAITTGWTPPVCNLRRPP", "down_seq": "EEIEADNLNTECTELTDLAR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VYW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYW1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser584" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "584", "end_pos": "584" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "674", "end_pos": "674" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VYW1-1.669.669", "start_pos": 669, "end_pos": 669, "uniprot_canonical_ac": "Q8VYW1-1", "length": 741, "uniprot_id": "PAPS4_ARATH", "protein_name": "Nuclear poly(A) polymerase 4", "refseq_ac": "NP_001031778", "refseq_name": "nuclear poly(a) polymerase", "gene_name": "PAPS4", "gene_names_uniprotkb": "PAPS4; NPAP; T16I18.60", "gene_names_refseq": "PAP(IV); PAPS4; nPAP; nuclear poly(a) polymerase; poly(A) polymerase 4; poly(A) polymerase IV", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYW1", "url": "https://www.uniprot.org/uniprotkb/Q8VYW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q8VYW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYW1" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q8VYW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYW1", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SGQEENLDRNLRSVSISGTD", "down_seq": "PLLPSRSCGQNRDYEGFGFP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VYW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYW1" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser669" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "584", "end_pos": "584" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "674", "end_pos": "674" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q8VYW1-1.674.674", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VYW1-1.674.674", "start_pos": 674, "end_pos": 674, "uniprot_canonical_ac": "Q8VYW1-1", "length": 741, "uniprot_id": "PAPS4_ARATH", "protein_name": "Nuclear poly(A) polymerase 4", "refseq_ac": "NP_001031778", "refseq_name": "nuclear poly(a) polymerase", "gene_name": "PAPS4", "gene_names_uniprotkb": "PAPS4; NPAP; T16I18.60", "gene_names_refseq": "PAP(IV); PAPS4; nPAP; nuclear poly(a) polymerase; poly(A) polymerase 4; poly(A) polymerase IV", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYW1", "url": "https://www.uniprot.org/uniprotkb/Q8VYW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VYW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYW1", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NLDRNLRSVSISGTDSPLLP", "down_seq": "RSCGQNRDYEGFGFPAANSD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VYW1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VYW1" } ], "site_lbl": "Ser674" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "584", "end_pos": "584" }, { "start_pos": "669", "end_pos": "669" }, { "start_pos": "674", "end_pos": "674" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8VYW1-1.669.669", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.1009.1009", "start_pos": 1009, "end_pos": 1009, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SPPDATLSLKSISDHRLPEP", "down_seq": "PEIKEEVLEILKVALLCLHS", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1009", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8VZG8-1.989.989", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.119.119", "start_pos": 119, "end_pos": 119, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8WEC", "url": "https://www.rcsb.org/structure/8WEC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WED", "url": "https://www.rcsb.org/structure/8WED", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEE", "url": "https://www.rcsb.org/structure/8WEE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8YAA", "url": "https://www.rcsb.org/structure/8YAA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEC|D|119", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WED|D|119", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEE|A|119", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8YAA|A|119", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NLTNTGIEGTFEDFPFSSLP", "down_seq": "LTFVDLSMNRFSGTISPLWG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8WEC&bu=0&command=select+.D:119;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn119", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8WEC", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEC" }, { "id": "8WED", "database": "PDB", "url": "https://www.rcsb.org/structure/8WED" }, { "id": "8WEE", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEE" }, { "id": "8YAA", "database": "PDB", "url": "https://www.rcsb.org/structure/8YAA" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q8VZG8-1.99.99", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.179.179", "start_pos": 179, "end_pos": 179, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PPELGDLSNLDTLHLVENKL", "down_seq": "GSIPSEIGRLTKVTEIAIYD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn179", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "upstream", "id": "Q8VZG8-1.198.198", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.212.212", "start_pos": 212, "end_pos": 212, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8WEB", "url": "https://www.rcsb.org/structure/8WEB", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEE", "url": "https://www.rcsb.org/structure/8WEE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEB|A|212", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEE|A|212", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VTEIAIYDNLLTGPIPSSFG", "down_seq": "LTKLVNLYLFINSLSGSIPS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8WEB&bu=0&command=select+.A:212;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn212", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8WEB", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEB" }, { "id": "8WEE", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEE" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8VZG8-1.198.198", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q8VZG8-1.203.203", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.249.249", "start_pos": 249, "end_pos": 249, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8WEE", "url": "https://www.rcsb.org/structure/8WEE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8YAA", "url": "https://www.rcsb.org/structure/8YAA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEE|A|249", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8YAA|A|249", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SIPSEIGNLPNLRELCLDRN", "down_seq": "LTGKIPSSFGNLKNVTLLNM", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8WEE&bu=0&command=select+.A:249;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn249", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8WEE", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEE" }, { "id": "8YAA", "database": "PDB", "url": "https://www.rcsb.org/structure/8YAA" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q8VZG8-1.263.263", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.263.263", "start_pos": 263, "end_pos": 263, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8WEC", "url": "https://www.rcsb.org/structure/8WEC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WED", "url": "https://www.rcsb.org/structure/8WED", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEE", "url": "https://www.rcsb.org/structure/8WEE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEC|A|263", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEC|D|263", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WED|A|263", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WED|D|263", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEE|A|263", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LCLDRNNLTGKIPSSFGNLK", "down_seq": "VTLLNMFENQLSGEIPPEIG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8WEC&bu=0&command=select+.A:263;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn263", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8WEC", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEC" }, { "id": "8WED", "database": "PDB", "url": "https://www.rcsb.org/structure/8WED" }, { "id": "8WEE", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEE" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8VZG8-1.249.249", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.284.284", "start_pos": 284, "end_pos": 284, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8WEC", "url": "https://www.rcsb.org/structure/8WEC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WED", "url": "https://www.rcsb.org/structure/8WED", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEC|A|284", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WED|A|284", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "VTLLNMFENQLSGEIPPEIG", "down_seq": "MTALDTLSLHTNKLTGPIPS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8WEC&bu=0&command=select+.A:284;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn284", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8WEC", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEC" }, { "id": "8WED", "database": "PDB", "url": "https://www.rcsb.org/structure/8WED" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.323.323", "start_pos": 323, "end_pos": 323, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8WEB", "url": "https://www.rcsb.org/structure/8WEB", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEC", "url": "https://www.rcsb.org/structure/8WEC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WED", "url": "https://www.rcsb.org/structure/8WED", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEE", "url": "https://www.rcsb.org/structure/8WEE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEB|A|323", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEC|D|323", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WED|D|323", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEE|A|323", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSTLGNIKTLAVLHLYLNQL", "down_seq": "GSIPPELGEMESMIDLEISE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8WEB&bu=0&command=select+.A:323;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn323", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8WEB", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEB" }, { "id": "8WEC", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEC" }, { "id": "8WED", "database": "PDB", "url": "https://www.rcsb.org/structure/8WED" }, { "id": "8WEE", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEE" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.380.380", "start_pos": 380, "end_pos": 380, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LEWLFLRDNQLSGPIPPGIA", "down_seq": "STELTVLQLDTNNFTGFLPD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn380", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q8VZG8-1.393.393", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.393.393", "start_pos": 393, "end_pos": 393, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8YAA", "url": "https://www.rcsb.org/structure/8YAA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8YAA|A|393", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PIPPGIANSTELTVLQLDTN", "down_seq": "FTGFLPDTICRGGKLENLTL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8YAA&bu=0&command=select+.A:393;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn393", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8YAA", "database": "PDB", "url": "https://www.rcsb.org/structure/8YAA" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8VZG8-1.380.380", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q8VZG8-1.410.410", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.410.410", "start_pos": 410, "end_pos": 410, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "8YAA", "url": "https://www.rcsb.org/structure/8YAA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8YAA|A|410", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DTNNFTGFLPDTICRGGKLE", "down_seq": "LTLDDNHFEGPVPKSLRDCK", "glycosylation": [ { "glytoucan_ac": "G22768VO", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8YAA&bu=0&command=select+.A:410;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn410", "evidence": [ { "id": "8YAA", "database": "PDB", "url": "https://www.rcsb.org/structure/8YAA" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn410", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q8VZG8-1.393.393", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.487.487", "start_pos": 487, "end_pos": 487, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8WEB", "url": "https://www.rcsb.org/structure/8WEB", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEC", "url": "https://www.rcsb.org/structure/8WEC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WED", "url": "https://www.rcsb.org/structure/8WED", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEE", "url": "https://www.rcsb.org/structure/8WEE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEB|A|487", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEC|A|487", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEC|D|487", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WED|A|487", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WED|D|487", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEE|A|487", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HGQLSANWEQSQKLVAFILS", "down_seq": "NSITGAIPPEIWNMTQLSQL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8WEB&bu=0&command=select+.A:487;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn487", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8WEB", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEB" }, { "id": "8WEC", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEC" }, { "id": "8WED", "database": "PDB", "url": "https://www.rcsb.org/structure/8WED" }, { "id": "8WEE", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEE" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q8VZG8-1.500.500", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.500.500", "start_pos": 500, "end_pos": 500, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LVAFILSNNSITGAIPPEIW", "down_seq": "MTQLSQLDLSSNRITGELPE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn500", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8VZG8-1.487.487", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.580.580", "start_pos": 580, "end_pos": 580, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NRFSSEIPPTLNNLPRLYYM", "down_seq": "LSRNDLDQTIPEGLTKLSQL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn580", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.633.633", "start_pos": 633, "end_pos": 633, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8WED", "url": "https://www.rcsb.org/structure/8WED", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8YAA", "url": "https://www.rcsb.org/structure/8YAA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WED|D|633", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8YAA|A|633", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EISSQFRSLQNLERLDLSHN", "down_seq": "LSGQIPPSFKDMLALTHVDV", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8WED&bu=0&command=select+.D:633;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn633", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8WED", "database": "PDB", "url": "https://www.rcsb.org/structure/8WED" }, { "id": "8YAA", "database": "PDB", "url": "https://www.rcsb.org/structure/8YAA" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.63.63", "start_pos": 63, "end_pos": 63, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8WEB", "url": "https://www.rcsb.org/structure/8WEB", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEC", "url": "https://www.rcsb.org/structure/8WEC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WED", "url": "https://www.rcsb.org/structure/8WED", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8YAA", "url": "https://www.rcsb.org/structure/8YAA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEB|A|63", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEC|D|63", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WED|D|63", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8YAA|A|63", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AVSATVEEANALLKWKSTFT", "down_seq": "QTSSSKLSSWVNPNTSSFCT", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8WEB&bu=0&command=select+.A:63;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn63", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8WEB", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEB" }, { "id": "8WEC", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEC" }, { "id": "8WED", "database": "PDB", "url": "https://www.rcsb.org/structure/8WED" }, { "id": "8YAA", "database": "PDB", "url": "https://www.rcsb.org/structure/8YAA" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "upstream", "id": "Q8VZG8-1.77.77", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.687.687", "start_pos": 687, "end_pos": 687, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "AFRNAPPDAFEGNKDLCGSV", "down_seq": "TTQGLKPCSITSSKKSHKDR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn687", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.77.77", "start_pos": 77, "end_pos": 77, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "WKSTFTNQTSSSKLSSWVNP", "down_seq": "TSSFCTSWYGVACSLGSIIR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn77", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8VZG8-1.63.63", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.99.99", "start_pos": 99, "end_pos": 99, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "8WEB", "url": "https://www.rcsb.org/structure/8WEB", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEE", "url": "https://www.rcsb.org/structure/8WEE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8YAA", "url": "https://www.rcsb.org/structure/8YAA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8WEB|A|99", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8WEE|A|99", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "8YAA|A|99", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SSFCTSWYGVACSLGSIIRL", "down_seq": "LTNTGIEGTFEDFPFSSLPN", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8WEB&bu=0&command=select+.A:99;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn99", "evidence": [ { "id": "Q8VZG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8#ptm_processing" }, { "id": "8WEB", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEB" }, { "id": "8WEE", "database": "PDB", "url": "https://www.rcsb.org/structure/8WEE" }, { "id": "8YAA", "database": "PDB", "url": "https://www.rcsb.org/structure/8YAA" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "upstream", "id": "Q8VZG8-1.119.119", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.198.198", "start_pos": 198, "end_pos": 198, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8-1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LNGSIPSEIGRLTKVTEIAI", "down_seq": "DNLLTGPIPSSFGNLTKLVN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Tyr198" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8VZG8-1.179.179", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8VZG8-1.203.203", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8VZG8-1.212.212", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZG8-1.203.203", "start_pos": 203, "end_pos": 203, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8-1" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] } ], "crossref": [ { "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "PSEIGRLTKVTEIAIYDNLL", "down_seq": "GPIPSSFGNLTKLVNLYLFI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ], "site_lbl": "Thr203" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8VZG8-1.198.198", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8VZG8-1.212.212", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZG8-1.745.745", "start_pos": 745, "end_pos": 745, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" }, { "database": "iPTMnet", "id": "Q8VZG8-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8-1" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8-1" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SVCAGIFICFRKRTKQIEEH", "down_seq": "DSESGGETLSIFSFDGKVRY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Thr745" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q8VZG8-1.747.747", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8VZG8-1.749.749", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8VZG8-1.753.753", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZG8-1.747.747", "start_pos": 747, "end_pos": 747, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" }, { "database": "iPTMnet", "id": "Q8VZG8-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8-1" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-07", "authors": "Benschop Joris J, Mohammed Shabaz, O'Flaherty Martina, Heck Albert J R, Slijper Monique, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8-1" } ], "reference": [ { "type": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CAGIFICFRKRTKQIEEHTD", "down_seq": "ESGGETLSIFSFDGKVRYQE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17317660", "url": "https://glygen.org/publication/PubMed/17317660" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser747" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8VZG8-1.745.745", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8VZG8-1.749.749", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8VZG8-1.753.753", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZG8-1.749.749", "start_pos": 749, "end_pos": 749, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" }, { "database": "iPTMnet", "id": "Q8VZG8-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8-1" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GIFICFRKRTKQIEEHTDSE", "down_seq": "GGETLSIFSFDGKVRYQEII", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Ser749" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q8VZG8-1.745.745", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8VZG8-1.747.747", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8VZG8-1.753.753", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZG8-1.753.753", "start_pos": 753, "end_pos": 753, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" }, { "database": "iPTMnet", "id": "Q8VZG8-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8-1" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] } ], "crossref": [ { "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CFRKRTKQIEEHTDSESGGE", "down_seq": "LSIFSFDGKVRYQEIIKATG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ], "site_lbl": "Thr753" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8VZG8-1.745.745", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8VZG8-1.747.747", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8VZG8-1.749.749", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q8VZG8-1.772.772", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZG8-1.772.772", "start_pos": 772, "end_pos": 772, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ETLSIFSFDGKVRYQEIIKA", "down_seq": "GEFDPKYLIGTGGHGKVYKA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "site_lbl": "Thr772" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q8VZG8-1.753.753", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.829.829", "start_pos": 829, "end_pos": 829, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DSSISNPSTKQEFLNEIRAL", "down_seq": "EIRHRNVVKLFGFCSHRRNT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" } ], "site_lbl": "Thr829" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.853.853", "start_pos": 853, "end_pos": 853, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HRNVVKLFGFCSHRRNTFLV", "down_seq": "EYMERGSLRKVLENDDEAKK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "site_lbl": "Tyr853" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.892.892", "start_pos": 892, "end_pos": 892, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KKLDWGKRINVVKGVAHALS", "down_seq": "MHHDRSPAIVHRDISSGNIL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "site_lbl": "Tyr892" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.938.938", "start_pos": 938, "end_pos": 938, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EAKISDFGTAKLLKPDSSNW", "down_seq": "AVAGTYGYVAPELAYAMKVT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "site_lbl": "Ser938" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q8VZG8-1.946.946", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q8VZG8-1.953.953", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.946.946", "start_pos": 946, "end_pos": 946, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TAKLLKPDSSNWSAVAGTYG", "down_seq": "VAPELAYAMKVTEKCDVYSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "site_lbl": "Tyr946" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q8VZG8-1.938.938", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8VZG8-1.953.953", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.953.953", "start_pos": 953, "end_pos": 953, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DSSNWSAVAGTYGYVAPELA", "down_seq": "AMKVTEKCDVYSFGVLTLEV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "site_lbl": "Tyr953" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q8VZG8-1.938.938", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q8VZG8-1.946.946", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8VZG8-1.988.988", "start_pos": 988, "end_pos": 988, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" }, { "database": "iPTMnet", "id": "Q8VZG8-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8-1" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] } ], "crossref": [ { "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VLTLEVIKGEHPGDLVSTLS", "down_seq": "SPPDATLSLKSISDHRLPEP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ], "site_lbl": "Ser988" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8VZG8-1.989.989", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZG8-1.989.989", "start_pos": 989, "end_pos": 989, "uniprot_canonical_ac": "Q8VZG8-1", "length": 1045, "uniprot_id": "MIK2_ARATH", "protein_name": "MDIS1-interacting receptor like kinase 2", "refseq_ac": "NP_192625", "refseq_name": "Leucine-rich repeat receptor-like protein kinase family protein", "gene_name": "MIK2", "gene_names_uniprotkb": "MIK2; T32A17.160", "gene_names_refseq": "T32A17.160; T32A17_160", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" }, { "database": "iPTMnet", "id": "Q8VZG8-1", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8-1" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] } ], "crossref": [ { "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LTLEVIKGEHPGDLVSTLSS", "down_seq": "PPDATLSLKSISDHRLPEPT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZG8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZG8" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ], "site_lbl": "Ser989" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1009", "end_pos": "1009" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "212", "end_pos": "212" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "263", "end_pos": "263" }, { "start_pos": "284", "end_pos": "284" }, { "start_pos": "323", "end_pos": "323" }, { "start_pos": "380", "end_pos": "380" }, { "start_pos": "393", "end_pos": "393" }, { "start_pos": "410", "end_pos": "410" }, { "start_pos": "487", "end_pos": "487" }, { "start_pos": "500", "end_pos": "500" }, { "start_pos": "580", "end_pos": "580" }, { "start_pos": "633", "end_pos": "633" }, { "start_pos": "63", "end_pos": "63" }, { "start_pos": "687", "end_pos": "687" }, { "start_pos": "77", "end_pos": "77" }, { "start_pos": "99", "end_pos": "99" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "203", "end_pos": "203" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "747", "end_pos": "747" }, { "start_pos": "749", "end_pos": "749" }, { "start_pos": "753", "end_pos": "753" }, { "start_pos": "772", "end_pos": "772" }, { "start_pos": "829", "end_pos": "829" }, { "start_pos": "853", "end_pos": "853" }, { "start_pos": "892", "end_pos": "892" }, { "start_pos": "938", "end_pos": "938" }, { "start_pos": "946", "end_pos": "946" }, { "start_pos": "953", "end_pos": "953" }, { "start_pos": "988", "end_pos": "988" }, { "start_pos": "989", "end_pos": "989" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8VZG8-1.988.988", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q8VZG8-1.1009.1009", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.105.105", "start_pos": 105, "end_pos": 105, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Monomerization of abscisic acid receptors through CARKs-mediated phosphorylation.", "journal": "The New phytologist", "date": "2022-07", "authors": "Li Xiaoyi, Xie Yiting, Zhang Qian, Hua Xinyue, Peng Lu, Li Kexuan, Yu Qin, Chen Yihong, Yao Huan, He Juan, Huang Yaling, Wang Ruolin, Wang Tao, Wang Jianmei, Li Xufeng, Yang Yi", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "35388459", "url": "https://glygen.org/publication/PubMed/35388459" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "35388459", "url": "https://glygen.org/publication/PubMed/35388459", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YKHFIKSCNVSEDFEMRVGC", "down_seq": "RDVNVISGLPANTSRERLDL", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Phospho-defective mutant leading to hyposensitivity to abscisic acid (ABA).", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "35388459", "url": "https://glygen.org/publication/PubMed/35388459" } ] }, { "sequence_org": "T", "sequence_mut": "D", "comment": "Phospho-mimetic mutant hypersensitive to abscisic acid (ABA) displaying ABA-induced inhibition of the phosphatase ABI1 activity, leading to up-regulation of ABA-responsive genes RD29A and RD29B.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "35388459", "url": "https://glygen.org/publication/PubMed/35388459" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by CARK1, CARK5 and CARK7", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "site_lbl": "Thr105" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q8VZS8-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q8VZS8-1.88.88", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q8VZS8-1.90.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8VZS8-1.111.111", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8VZS8-1.112.112", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8VZS8-1.114.114", "categories": [ "mutagenesis_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8VZS8-1.115.115", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q8VZS8-1.117.117", "categories": [ "mutagenesis_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q8VZS8-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q8VZS8-1.119.119", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] }, { "title": "Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2014-05", "authors": "Nakagawa Masahiro, Kagiyama Megumi, Shibata Nobuyuki, Hirano Yoshinori, Hakoshima Toshio", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "I", "start_aa": "I", "up_seq": "SCNVSEDFEMRVGCTRDVNV", "down_seq": "SGLPANTSRERLDLLDDDRR", "mutagenesis": [ { "sequence_org": "I", "sequence_mut": "A", "comment": "Normal affinity for ABI1.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] }, { "sequence_org": "I", "sequence_mut": "K", "comment": "Forms monomer and exhibits an enhanced ABA affinity.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q8VZS8-1.105.105", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8VZS8-1.112.112", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8VZS8-1.114.114", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8VZS8-1.115.115", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8VZS8-1.117.117", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8VZS8-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8VZS8-1.119.119", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] }, { "title": "Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2014-05", "authors": "Nakagawa Masahiro, Kagiyama Megumi, Shibata Nobuyuki, Hirano Yoshinori, Hakoshima Toshio", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CNVSEDFEMRVGCTRDVNVI", "down_seq": "GLPANTSRERLDLLDDDRRV", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Reduced binding affinity and inhibitory activity toward ABI1.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] }, { "sequence_org": "S", "sequence_mut": "R", "comment": "Forms homodimer and exhibits an enhanced ABA affinity; when associated with R-117.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q8VZS8-1.105.105", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8VZS8-1.111.111", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8VZS8-1.114.114", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8VZS8-1.115.115", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8VZS8-1.117.117", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q8VZS8-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q8VZS8-1.119.119", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.114.114", "start_pos": 114, "end_pos": 114, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "VSEDFEMRVGCTRDVNVISG", "down_seq": "PANTSRERLDLLDDDRRVTG", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Reduced affinity for ABI1.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q8VZS8-1.105.105", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8VZS8-1.111.111", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8VZS8-1.112.112", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8VZS8-1.115.115", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8VZS8-1.117.117", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8VZS8-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8VZS8-1.119.119", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.115.115", "start_pos": 115, "end_pos": 115, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "SEDFEMRVGCTRDVNVISGL", "down_seq": "ANTSRERLDLLDDDRRVTGF", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "A", "comment": "Reduced affinity for ABI1.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8VZS8-1.105.105", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8VZS8-1.111.111", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8VZS8-1.112.112", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8VZS8-1.114.114", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8VZS8-1.117.117", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8VZS8-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q8VZS8-1.119.119", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.117.117", "start_pos": 117, "end_pos": 117, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2014-05", "authors": "Nakagawa Masahiro, Kagiyama Megumi, Shibata Nobuyuki, Hirano Yoshinori, Hakoshima Toshio", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DFEMRVGCTRDVNVISGLPA", "down_seq": "TSRERLDLLDDDRRVTGFSI", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "R", "comment": "Forms homodimer and exhibits an enhanced ABA affinity; when associated with R-112.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q8VZS8-1.105.105", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8VZS8-1.111.111", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8VZS8-1.112.112", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8VZS8-1.114.114", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8VZS8-1.115.115", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8VZS8-1.118.118", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8VZS8-1.119.119", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.142.142", "start_pos": 142, "end_pos": 142, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "RLDLLDDDRRVTGFSITGGE", "down_seq": "RLRNYKSVTTVHRFEKEEEE", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of affinity for ABI1.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8VZS8-1.143.143", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8VZS8-1.144.144", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.143.143", "start_pos": 143, "end_pos": 143, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "LDLLDDDRRVTGFSITGGEH", "down_seq": "LRNYKSVTTVHRFEKEEEEE", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of affinity for ABI1.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8VZS8-1.142.142", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8VZS8-1.144.144", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.144.144", "start_pos": 144, "end_pos": 144, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "L", "start_aa": "L", "up_seq": "DLLDDDRRVTGFSITGGEHR", "down_seq": "RNYKSVTTVHRFEKEEEEER", "mutagenesis": [ { "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of affinity for ABI1.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q8VZS8-1.142.142", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8VZS8-1.143.143", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.178.178", "start_pos": 178, "end_pos": 178, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "P", "start_aa": "P", "up_seq": "KEEEEERIWTVVLESYVVDV", "down_seq": "EGNSEEDTRLFADTVIRLNL", "mutagenesis": [ { "sequence_org": "P", "sequence_mut": "A", "comment": "Normal affinity for ABI1.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8VZS8-1.181.181", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q8VZS8-1.189.189", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.181.181", "start_pos": 181, "end_pos": 181, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "EEERIWTVVLESYVVDVPEG", "down_seq": "SEEDTRLFADTVIRLNLQKL", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "A", "comment": "Reduced affinity for ABI1.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8VZS8-1.178.178", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q8VZS8-1.189.189", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.189.189", "start_pos": 189, "end_pos": 189, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "VLESYVVDVPEGNSEEDTRL", "down_seq": "ADTVIRLNLQKLASITEAMN", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced affinity for ABI1.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q8VZS8-1.178.178", "categories": [ "mutagenesis_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8VZS8-1.181.181", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.87.87", "start_pos": 87, "end_pos": 87, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2014-05", "authors": "Nakagawa Masahiro, Kagiyama Megumi, Shibata Nobuyuki, Hirano Yoshinori, Hakoshima Toshio", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] }, { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "H", "start_aa": "H", "up_seq": "APPETVWSVVRRFDRPQIYK", "down_seq": "FIKSCNVSEDFEMRVGCTRD", "mutagenesis": [ { "sequence_org": "H", "sequence_mut": "A", "comment": "Normal affinity for ABI1. Forms monomers and exhibits normal ABA affinity; when associated by A-88 and S-90.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8VZS8-1.88.88", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q8VZS8-1.90.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q8VZS8-1.105.105", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.88.88", "start_pos": 88, "end_pos": 88, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2014-05", "authors": "Nakagawa Masahiro, Kagiyama Megumi, Shibata Nobuyuki, Hirano Yoshinori, Hakoshima Toshio", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] }, { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", "authors": "Miyazono Ken-Ichi, Miyakawa Takuya, Sawano Yoriko, Kubota Keiko, Kang Hee-Jin, Asano Atsuko, Miyauchi Yumiko, Takahashi Mihoko, Zhi Yuehua, Fujita Yasunari, Yoshida Takuya, Kodaira Ken-Suke, Yamaguchi-Shinozaki Kazuko, Tanokura Masaru", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "F", "start_aa": "F", "up_seq": "PPETVWSVVRRFDRPQIYKH", "down_seq": "IKSCNVSEDFEMRVGCTRDV", "mutagenesis": [ { "sequence_org": "F", "sequence_mut": "A", "comment": "Reduced affinity for ABI1. Forms monomers and exhibits normal ABA affinity; when associated by A-87 and S-90.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" }, { "database": "PubMed", "id": "19855379", "url": "https://glygen.org/publication/PubMed/19855379" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8VZS8-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q8VZS8-1.90.90", "categories": [ "mutagenesis_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q8VZS8-1.105.105", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.90.90", "start_pos": 90, "end_pos": 90, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanism of high-affinity abscisic acid binding to PYL9/RCAR1.", "journal": "Genes to cells : devoted to molecular & cellular mechanisms", "date": "2014-05", "authors": "Nakagawa Masahiro, Kagiyama Megumi, Shibata Nobuyuki, Hirano Yoshinori, Hakoshima Toshio", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "ETVWSVVRRFDRPQIYKHFI", "down_seq": "SCNVSEDFEMRVGCTRDVNV", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "S", "comment": "Forms monomers and exhibits normal ABA affinity; when associated by A-87 and A-88.", "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" }, { "database": "PubMed", "id": "24645846", "url": "https://glygen.org/publication/PubMed/24645846" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8VZS8-1.87.87", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8VZS8-1.88.88", "categories": [ "mutagenesis_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q8VZS8-1.105.105", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.118.118", "start_pos": 118, "end_pos": 118, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FEMRVGCTRDVNVISGLPAN", "down_seq": "SRERLDLLDDDRRVTGFSIT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Thr118" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q8VZS8-1.105.105", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q8VZS8-1.111.111", "categories": [ "mutagenesis_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q8VZS8-1.112.112", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8VZS8-1.114.114", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q8VZS8-1.115.115", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8VZS8-1.117.117", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8VZS8-1.119.119", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.119.119", "start_pos": 119, "end_pos": 119, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EMRVGCTRDVNVISGLPANT", "down_seq": "RERLDLLDDDRRVTGFSITG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser119" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q8VZS8-1.105.105", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q8VZS8-1.111.111", "categories": [ "mutagenesis_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q8VZS8-1.112.112", "categories": [ "mutagenesis_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q8VZS8-1.114.114", "categories": [ "mutagenesis_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q8VZS8-1.115.115", "categories": [ "mutagenesis_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q8VZS8-1.117.117", "categories": [ "mutagenesis_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8VZS8-1.118.118", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.4.4", "start_pos": 4, "end_pos": 4, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MAN", "down_seq": "ESSSSPVNEEENSQRISTLH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser4" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q8VZS8-1.8.8", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q8VZS8-1.9.9", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.8.8", "start_pos": 8, "end_pos": 8, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MANSESS", "down_seq": "SPVNEEENSQRISTLHHQTM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser8" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q8VZS8-1.4.4", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q8VZS8-1.9.9", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8VZS8-1.9.9", "start_pos": 9, "end_pos": 9, "uniprot_canonical_ac": "Q8VZS8-1", "length": 221, "uniprot_id": "PYL1_ARATH", "protein_name": "Abscisic acid receptor PYL1", "refseq_ac": "NP_001331305", "refseq_name": "PYR1-like 1", "gene_name": "PYL1", "gene_names_uniprotkb": "PYL1; MZA15.21; RCAR12", "gene_names_refseq": "MZA15.21; MZA15_21; PYL1; PYR1-like 1; RCAR12; regulatory components of ABA receptor 12", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZS8", "url": "https://www.uniprot.org/uniprotkb/Q8VZS8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MANSESSS", "down_seq": "PVNEEENSQRISTLHHQTMP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8VZS8", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8VZS8" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser9" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "114", "end_pos": "114" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "117", "end_pos": "117" }, { "start_pos": "142", "end_pos": "142" }, { "start_pos": "143", "end_pos": "143" }, { "start_pos": "144", "end_pos": "144" }, { "start_pos": "178", "end_pos": "178" }, { "start_pos": "181", "end_pos": "181" }, { "start_pos": "189", "end_pos": "189" }, { "start_pos": "87", "end_pos": "87" }, { "start_pos": "88", "end_pos": "88" }, { "start_pos": "90", "end_pos": "90" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "105", "end_pos": "105" }, { "start_pos": "118", "end_pos": "118" }, { "start_pos": "119", "end_pos": "119" }, { "start_pos": "4", "end_pos": "4" }, { "start_pos": "8", "end_pos": "8" }, { "start_pos": "9", "end_pos": "9" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q8VZS8-1.4.4", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q8VZS8-1.8.8", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W234-1.111.111", "start_pos": 111, "end_pos": 111, "uniprot_canonical_ac": "Q8W234-1", "length": 877, "uniprot_id": "SEUSS_ARATH", "protein_name": "Transcriptional corepressor SEUSS", "refseq_ac": "NP_001117434", "refseq_name": "SEUSS transcriptional co-regulator", "gene_name": "SEU", "gene_names_uniprotkb": "SEU; F28H19.10", "gene_names_refseq": "F28H19.10; F28H19_10; SEU; seuss", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W234", "url": "https://www.uniprot.org/uniprotkb/Q8W234" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q8W234", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8W234" }, { "database": "O-GlcNAc Atlas", "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SNVGFSGLSSFNASSMVSPR", "down_seq": "SGQVQGQQFSNVSANQLLAE", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser111", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q8W234", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "616", "end_pos": "616" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8W234-1.112.112", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q8W234-1.121.121", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W234-1.112.112", "start_pos": 112, "end_pos": 112, "uniprot_canonical_ac": "Q8W234-1", "length": 877, "uniprot_id": "SEUSS_ARATH", "protein_name": "Transcriptional corepressor SEUSS", "refseq_ac": "NP_001117434", "refseq_name": "SEUSS transcriptional co-regulator", "gene_name": "SEU", "gene_names_uniprotkb": "SEU; F28H19.10", "gene_names_refseq": "F28H19.10; F28H19_10; SEU; seuss", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W234", "url": "https://www.uniprot.org/uniprotkb/Q8W234" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q8W234", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8W234" }, { "database": "O-GlcNAc Atlas", "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NVGFSGLSSFNASSMVSPRS", "down_seq": "GQVQGQQFSNVSANQLLAEQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser112", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q8W234", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "616", "end_pos": "616" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8W234-1.111.111", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q8W234-1.121.121", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W234-1.121.121", "start_pos": 121, "end_pos": 121, "uniprot_canonical_ac": "Q8W234-1", "length": 877, "uniprot_id": "SEUSS_ARATH", "protein_name": "Transcriptional corepressor SEUSS", "refseq_ac": "NP_001117434", "refseq_name": "SEUSS transcriptional co-regulator", "gene_name": "SEU", "gene_names_uniprotkb": "SEU; F28H19.10", "gene_names_refseq": "F28H19.10; F28H19_10; SEU; seuss", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W234", "url": "https://www.uniprot.org/uniprotkb/Q8W234" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q8W234", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8W234" }, { "database": "O-GlcNAc Atlas", "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FNASSMVSPRSSGQVQGQQF", "down_seq": "NVSANQLLAEQQRNKKMETQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser121", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q8W234", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "616", "end_pos": "616" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q8W234-1.111.111", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q8W234-1.112.112", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W234-1.222.222", "start_pos": 222, "end_pos": 222, "uniprot_canonical_ac": "Q8W234-1", "length": 877, "uniprot_id": "SEUSS_ARATH", "protein_name": "Transcriptional corepressor SEUSS", "refseq_ac": "NP_001117434", "refseq_name": "SEUSS transcriptional co-regulator", "gene_name": "SEU", "gene_names_uniprotkb": "SEU; F28H19.10", "gene_names_refseq": "F28H19.10; F28H19_10; SEU; seuss", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W234", "url": "https://www.uniprot.org/uniprotkb/Q8W234" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q8W234", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8W234" }, { "database": "O-GlcNAc Atlas", "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EPQQIQAMRNLAQVKMEPQH", "down_seq": "EQSLFLQQQQRQQQQQQQQQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser222", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q8W234", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "616", "end_pos": "616" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q8W234-1.225.225", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W234-1.225.225", "start_pos": 225, "end_pos": 225, "uniprot_canonical_ac": "Q8W234-1", "length": 877, "uniprot_id": "SEUSS_ARATH", "protein_name": "Transcriptional corepressor SEUSS", "refseq_ac": "NP_001117434", "refseq_name": "SEUSS transcriptional co-regulator", "gene_name": "SEU", "gene_names_uniprotkb": "SEU; F28H19.10", "gene_names_refseq": "F28H19.10; F28H19_10; SEU; seuss", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W234", "url": "https://www.uniprot.org/uniprotkb/Q8W234" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q8W234", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8W234" }, { "database": "O-GlcNAc Atlas", "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QIQAMRNLAQVKMEPQHSEQ", "down_seq": "LFLQQQQRQQQQQQQQQFLQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser225", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q8W234", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "616", "end_pos": "616" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q8W234-1.222.222", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W234-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q8W234-1", "length": 877, "uniprot_id": "SEUSS_ARATH", "protein_name": "Transcriptional corepressor SEUSS", "refseq_ac": "NP_001117434", "refseq_name": "SEUSS transcriptional co-regulator", "gene_name": "SEU", "gene_names_uniprotkb": "SEU; F28H19.10", "gene_names_refseq": "F28H19.10; F28H19_10; SEU; seuss", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W234", "url": "https://www.uniprot.org/uniprotkb/Q8W234" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q8W234", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8W234" }, { "database": "O-GlcNAc Atlas", "id": "Q8W234", "url": "https://oglcnac.org/atlas/detail/Q8W234" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q8W234", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8W234", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q8W234", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q8W234" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "616", "end_pos": "616" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W234-1.198.198", "start_pos": 198, "end_pos": 198, "uniprot_canonical_ac": "Q8W234-1", "length": 877, "uniprot_id": "SEUSS_ARATH", "protein_name": "Transcriptional corepressor SEUSS", "refseq_ac": "NP_001117434", "refseq_name": "SEUSS transcriptional co-regulator", "gene_name": "SEU", "gene_names_uniprotkb": "SEU; F28H19.10", "gene_names_refseq": "F28H19.10; F28H19_10; SEU; seuss", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W234", "url": "https://www.uniprot.org/uniprotkb/Q8W234" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q8W234", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W234" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q8W234", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W234", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NDQQHGQVQQQQQKMLRNLG", "down_seq": "VKLEPQQIQAMRNLAQVKME", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8W234", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W234" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser198" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "616", "end_pos": "616" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W234-1.616.616", "start_pos": 616, "end_pos": 616, "uniprot_canonical_ac": "Q8W234-1", "length": 877, "uniprot_id": "SEUSS_ARATH", "protein_name": "Transcriptional corepressor SEUSS", "refseq_ac": "NP_001117434", "refseq_name": "SEUSS transcriptional co-regulator", "gene_name": "SEU", "gene_names_uniprotkb": "SEU; F28H19.10", "gene_names_refseq": "F28H19.10; F28H19_10; SEU; seuss", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W234", "url": "https://www.uniprot.org/uniprotkb/Q8W234" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q8W234", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W234" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q8W234", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W234", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QQQQQQQQQQQQQQQQQQTV", "down_seq": "QNTNSDQSSRQVALMQGNPS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8W234", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W234" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Ser616" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "111", "end_pos": "111" }, { "start_pos": "112", "end_pos": "112" }, { "start_pos": "121", "end_pos": "121" }, { "start_pos": "222", "end_pos": "222" }, { "start_pos": "225", "end_pos": "225" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "198", "end_pos": "198" }, { "start_pos": "616", "end_pos": "616" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W4L3-1.416.416", "start_pos": 416, "end_pos": 416, "uniprot_canonical_ac": "Q8W4L3-1", "length": 489, "uniprot_id": "BSK3_ARATH", "protein_name": "Serine/threonine-protein kinase BSK3", "refseq_ac": "NP_001329175", "refseq_name": "BR-signaling kinase 3", "gene_name": "BSK3", "gene_names_uniprotkb": "BSK3; F6N23.9", "gene_names_refseq": "BR-signaling kinase 3; BSK3; F6N23.9; F6N23_9; brassinosteroid-signaling kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W4L3", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DFREAIECYTQFIDGGMISP", "down_seq": "VCARRSLCYLMSDMPKEALD", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr416", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "416", "end_pos": "416" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8W4L3-1.212.212", "start_pos": 212, "end_pos": 212, "uniprot_canonical_ac": "Q8W4L3-1", "length": 489, "uniprot_id": "BSK3_ARATH", "protein_name": "Serine/threonine-protein kinase BSK3", "refseq_ac": "NP_001329175", "refseq_name": "BR-signaling kinase 3", "gene_name": "BSK3", "gene_names_uniprotkb": "BSK3; F6N23.9", "gene_names_refseq": "BR-signaling kinase 3; BSK3; F6N23.9; F6N23_9; brassinosteroid-signaling kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W4L3", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-10", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q8W4L3", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CNPRLSTFGLMKNSRDGKSY", "down_seq": "TNLAFTPPEYLRTGRITPES", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q8W4L3", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" }, { "database": "iPTMnet", "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser212" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "416", "end_pos": "416" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8W4L3-1.213.213", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W4L3-1.213.213", "start_pos": 213, "end_pos": 213, "uniprot_canonical_ac": "Q8W4L3-1", "length": 489, "uniprot_id": "BSK3_ARATH", "protein_name": "Serine/threonine-protein kinase BSK3", "refseq_ac": "NP_001329175", "refseq_name": "BR-signaling kinase 3", "gene_name": "BSK3", "gene_names_uniprotkb": "BSK3; F6N23.9", "gene_names_refseq": "BR-signaling kinase 3; BSK3; F6N23.9; F6N23_9; brassinosteroid-signaling kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W4L3", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis.", "journal": "BMC genomics", "date": "2015-07-18", "authors": "Lin Li-Ling, Hsu Chia-Lang, Hu Chia-Wei, Ko Shiao-Yun, Hsieh Hsu-Liang, Huang Hsuan-Cheng, Juan Hsueh-Fen", "evidence": [ { "database": "iPTMnet", "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3" } ], "reference": [ { "type": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ] } ], "crossref": [ { "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NPRLSTFGLMKNSRDGKSYS", "down_seq": "NLAFTPPEYLRTGRITPESV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3" }, { "database": "PubMed", "id": "26187819", "url": "https://glygen.org/publication/PubMed/26187819" } ], "site_lbl": "Thr213" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "416", "end_pos": "416" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8W4L3-1.212.212", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q8W4L3-1.31.31", "start_pos": 31, "end_pos": 31, "uniprot_canonical_ac": "Q8W4L3-1", "length": 489, "uniprot_id": "BSK3_ARATH", "protein_name": "Serine/threonine-protein kinase BSK3", "refseq_ac": "NP_001329175", "refseq_name": "BR-signaling kinase 3", "gene_name": "BSK3", "gene_names_uniprotkb": "BSK3; F6N23.9", "gene_names_refseq": "BR-signaling kinase 3; BSK3; F6N23.9; F6N23_9; brassinosteroid-signaling kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W4L3", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CRNTSHKTAVLEAPDVDNGE", "down_seq": "SEITDVPNFREYTLEQLKAA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3" } ], "site_lbl": "Ser31" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "416", "end_pos": "416" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q8W4L3-1.32.32", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q8W4L3-1.32.32", "start_pos": 32, "end_pos": 32, "uniprot_canonical_ac": "Q8W4L3-1", "length": 489, "uniprot_id": "BSK3_ARATH", "protein_name": "Serine/threonine-protein kinase BSK3", "refseq_ac": "NP_001329175", "refseq_name": "BR-signaling kinase 3", "gene_name": "BSK3", "gene_names_uniprotkb": "BSK3; F6N23.9", "gene_names_refseq": "BR-signaling kinase 3; BSK3; F6N23.9; F6N23_9; brassinosteroid-signaling kinase 3", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8W4L3", "url": "https://www.uniprot.org/uniprotkb/Q8W4L3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RNTSHKTAVLEAPDVDNGES", "down_seq": "EITDVPNFREYTLEQLKAAT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q8W4L3", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q8W4L3" } ], "site_lbl": "Ser32" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "416", "end_pos": "416" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "212", "end_pos": "212" }, { "start_pos": "213", "end_pos": "213" }, { "start_pos": "31", "end_pos": "31" }, { "start_pos": "32", "end_pos": "32" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q8W4L3-1.31.31", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q93WJ9-1.311.311", "start_pos": 311, "end_pos": 311, "uniprot_canonical_ac": "Q93WJ9-1", "length": 403, "uniprot_id": "KAN1_ARATH", "protein_name": "Transcription repressor KAN1", "refseq_ac": "NP_568334", "refseq_name": "Homeodomain-like superfamily protein", "gene_name": "KAN1", "gene_names_uniprotkb": "KAN1; KAN; MQK4.31", "gene_names_refseq": "KAN1; KANADI 1; KANADI; KAN; MQK4.31; MQK4_31", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93WJ9", "url": "https://www.uniprot.org/uniprotkb/Q93WJ9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q93WJ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WJ9" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q93WJ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WJ9", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EMGINGNEVHHQSSTDQRAQ", "down_seq": "DDTSLHQETDISSTQPRWSN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93WJ9", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93WJ9" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser311" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "311", "end_pos": "311" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93Z00-1.190.190", "start_pos": 190, "end_pos": 190, "uniprot_canonical_ac": "Q93Z00-1", "length": 489, "uniprot_id": "TCP14_ARATH", "protein_name": "Transcription factor TCP14", "refseq_ac": "NP_190346", "refseq_name": "TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14", "gene_name": "TCP14", "gene_names_uniprotkb": "TCP14; F1P2.170", "gene_names_refseq": "AtTCP14; TCP14; TEOSINTE BRANCHED; cycloidea and PCF (TCP) 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q93Z00", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q93Z00" }, { "database": "O-GlcNAc Atlas", "id": "Q93Z00", "url": "https://oglcnac.org/atlas/detail/Q93Z00" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q93Z00", "url": "https://oglcnac.org/atlas/detail/Q93Z00", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AATGTGTIPANFTSLNISLR", "down_seq": "SGSSMSLPSHFRSAASTFSP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser190", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q93Z00", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q93Z00" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "193", "end_pos": "193" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "207" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "275", "end_pos": "275" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q93Z00-1.191.191", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q93Z00-1.193.193", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q93Z00-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q93Z00-1.202.207", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93Z00-1.191.191", "start_pos": 191, "end_pos": 191, "uniprot_canonical_ac": "Q93Z00-1", "length": 489, "uniprot_id": "TCP14_ARATH", "protein_name": "Transcription factor TCP14", "refseq_ac": "NP_190346", "refseq_name": "TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14", "gene_name": "TCP14", "gene_names_uniprotkb": "TCP14; F1P2.170", "gene_names_refseq": "AtTCP14; TCP14; TEOSINTE BRANCHED; cycloidea and PCF (TCP) 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q93Z00", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q93Z00" }, { "database": "O-GlcNAc Atlas", "id": "Q93Z00", "url": "https://oglcnac.org/atlas/detail/Q93Z00" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q93Z00", "url": "https://oglcnac.org/atlas/detail/Q93Z00", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ATGTGTIPANFTSLNISLRS", "down_seq": "GSSMSLPSHFRSAASTFSPN", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser191", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q93Z00", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q93Z00" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "193", "end_pos": "193" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "207" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "275", "end_pos": "275" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q93Z00-1.190.190", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q93Z00-1.193.193", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q93Z00-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q93Z00-1.202.207", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93Z00-1.193.193", "start_pos": 193, "end_pos": 193, "uniprot_canonical_ac": "Q93Z00-1", "length": 489, "uniprot_id": "TCP14_ARATH", "protein_name": "Transcription factor TCP14", "refseq_ac": "NP_190346", "refseq_name": "TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14", "gene_name": "TCP14", "gene_names_uniprotkb": "TCP14; F1P2.170", "gene_names_refseq": "AtTCP14; TCP14; TEOSINTE BRANCHED; cycloidea and PCF (TCP) 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q93Z00", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q93Z00" }, { "database": "O-GlcNAc Atlas", "id": "Q93Z00", "url": "https://oglcnac.org/atlas/detail/Q93Z00" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q93Z00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93Z00" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q93Z00", "url": "https://oglcnac.org/atlas/detail/Q93Z00", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q93Z00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93Z00", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GTGTIPANFTSLNISLRSSG", "down_seq": "SMSLPSHFRSAASTFSPNNI", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser193", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q93Z00", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q93Z00" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93Z00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93Z00" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser193" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "193", "end_pos": "193" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "207" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "275", "end_pos": "275" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q93Z00-1.190.190", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q93Z00-1.191.191", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q93Z00-1.194.194", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q93Z00-1.202.207", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93Z00-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q93Z00-1", "length": 489, "uniprot_id": "TCP14_ARATH", "protein_name": "Transcription factor TCP14", "refseq_ac": "NP_190346", "refseq_name": "TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14", "gene_name": "TCP14", "gene_names_uniprotkb": "TCP14; F1P2.170", "gene_names_refseq": "AtTCP14; TCP14; TEOSINTE BRANCHED; cycloidea and PCF (TCP) 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis O-linked N-acetylglucosamine transferase SPINDLY interacts with class I TCPs to facilitate cytokinin responses in leaves and flowers.", "journal": "The Plant cell", "date": "2012-01", "authors": "Steiner Evyatar, Efroni Idan, Gopalraj Manjula, Saathoff Katie, Tseng Tong-Seung, Kieffer Martin, Eshed Yuval, Olszewski Neil, Weiss David", "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" }, { "database": "O-GlcNAc Database", "id": "Q93Z00", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q93Z00" } ], "reference": [ { "type": "PubMed", "id": "22267487", "url": "https://glygen.org/publication/PubMed/22267487" } ] }, { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q93Z00", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q93Z00" }, { "database": "O-GlcNAc Atlas", "id": "Q93Z00", "url": "https://oglcnac.org/atlas/detail/Q93Z00" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "22267487", "url": "https://glygen.org/publication/PubMed/22267487", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q93Z00", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q93Z00", "database": "O-GlcNAc Database", "categories": [ "Other" ] }, { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "22267487", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/22267487" }, { "id": "Q93Z00", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q93Z00" }, { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "193", "end_pos": "193" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "207" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "275", "end_pos": "275" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93Z00-1.202.207", "start_pos": 202, "end_pos": 207, "uniprot_canonical_ac": "Q93Z00-1", "length": 489, "uniprot_id": "TCP14_ARATH", "protein_name": "Transcription factor TCP14", "refseq_ac": "NP_190346", "refseq_name": "TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14", "gene_name": "TCP14", "gene_names_uniprotkb": "TCP14; F1P2.170", "gene_names_refseq": "AtTCP14; TCP14; TEOSINTE BRANCHED; cycloidea and PCF (TCP) 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.", "journal": "Cell host & microbe", "date": "2017-02-08", "authors": "Yang Li, Teixeira Paulo Jos\u00e9 Pereira Lima, Biswas Surojit, Finkel Omri M, He Yijian, Salas-Gonzalez Isai, English Marie E, Epple Petra, Mieczkowski Piotr, Dangl Jeffery L", "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "reference": [ { "type": "PubMed", "id": "28132837", "url": "https://glygen.org/publication/PubMed/28132837" } ] } ], "crossref": [ { "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "28132837", "url": "https://glygen.org/publication/PubMed/28132837", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "RSAAST", "start_aa": "R", "up_seq": "TSLNISLRSSGSSMSLPSHF", "down_seq": "FSPNNIFSPAMLQQQQQQQR", "mutagenesis": [ { "sequence_org": "RSAAST", "sequence_mut": "NAAIRS", "comment": "Unable to interact with the Pseudomonas syringae type III effector HopBB1.", "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" }, { "database": "PubMed", "id": "28132837", "url": "https://glygen.org/publication/PubMed/28132837" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "193", "end_pos": "193" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "207" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "275", "end_pos": "275" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q93Z00-1.190.190", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q93Z00-1.191.191", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q93Z00-1.193.193", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q93Z00-1.194.194", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93Z00-1.194.194", "start_pos": 194, "end_pos": 194, "uniprot_canonical_ac": "Q93Z00-1", "length": 489, "uniprot_id": "TCP14_ARATH", "protein_name": "Transcription factor TCP14", "refseq_ac": "NP_190346", "refseq_name": "TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14", "gene_name": "TCP14", "gene_names_uniprotkb": "TCP14; F1P2.170", "gene_names_refseq": "AtTCP14; TCP14; TEOSINTE BRANCHED; cycloidea and PCF (TCP) 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q93Z00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93Z00" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q93Z00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93Z00", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TGTIPANFTSLNISLRSSGS", "down_seq": "MSLPSHFRSAASTFSPNNIF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93Z00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93Z00" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser194" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "193", "end_pos": "193" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "207" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "275", "end_pos": "275" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q93Z00-1.190.190", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q93Z00-1.191.191", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q93Z00-1.193.193", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q93Z00-1.202.207", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q93Z00-1.275.275", "start_pos": 275, "end_pos": 275, "uniprot_canonical_ac": "Q93Z00-1", "length": 489, "uniprot_id": "TCP14_ARATH", "protein_name": "Transcription factor TCP14", "refseq_ac": "NP_190346", "refseq_name": "TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14", "gene_name": "TCP14", "gene_names_uniprotkb": "TCP14; F1P2.170", "gene_names_refseq": "AtTCP14; TCP14; TEOSINTE BRANCHED; cycloidea and PCF (TCP) 14", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q93Z00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93Z00" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q93Z00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93Z00", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TPTTSFLNFHNPTKQEGDQD", "down_seq": "EELNSEKKRRIQTTSDLHQQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q93Z00", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q93Z00" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser275" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "190", "end_pos": "190" }, { "start_pos": "191", "end_pos": "191" }, { "start_pos": "193", "end_pos": "193" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "202", "end_pos": "207" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "193", "end_pos": "193" }, { "start_pos": "194", "end_pos": "194" }, { "start_pos": "275", "end_pos": "275" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "BR-SIGNALING KINASE1 physically associates with FLAGELLIN SENSING2 and regulates plant innate immunity in Arabidopsis.", "journal": "The Plant cell", "date": "2013-03", "authors": "Shi Hua, Shen Qiujing, Qi Yiping, Yan Haojie, Nie Haozhen, Chen Yongfang, Zhao Ting, Katagiri Fumiaki, Tang Dingzhong", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23532072", "url": "https://glygen.org/publication/PubMed/23532072" } ] } ], "crossref": [ { "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23532072", "url": "https://glygen.org/publication/PubMed/23532072", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "EKAPNLVYKGRLQNRRWIAV", "down_seq": "KFTKMAWPEPKQFAEEAWGV", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "Abolishes kinase activity; enhances susceptibility to fungal and bacterial pathogens.", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "PubMed", "id": "23532072", "url": "https://glygen.org/publication/PubMed/23532072" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "2008-07-25", "authors": "Tang Wenqiang, Kim Tae-Wuk, Oses-Prieto Juan A, Sun Yu, Deng Zhiping, Zhu Shengwei, Wang Ruiju, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "18653891", "url": "https://glygen.org/publication/PubMed/18653891" } ] }, { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Niittyl\u00e4 Totte, Fuglsang Anja T, Palmgren Michael G, Frommer Wolf B, Schulze Waltraud X", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18653891", "url": "https://glygen.org/publication/PubMed/18653891", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q944A7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q944A7", "database": "PRO", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "GDPRLSCFGLMKNSRDGKSY", "down_seq": "TNLAYTPPEYLRNGRVTPES", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Reduces protein phosphorylation 5-fold.", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "PubMed", "id": "18653891", "url": "https://glygen.org/publication/PubMed/18653891" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "PubMed", "id": "18653891", "url": "https://glygen.org/publication/PubMed/18653891" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17586839", "url": "https://glygen.org/publication/PubMed/17586839" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PRO", "id": "Q944A7", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q944A7" } ], "site_lbl": "Ser230" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q944A7-1.228.228", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q944A7-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q944A7-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q944A7-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q944A7-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q944A7-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.2.2", "start_pos": 2, "end_pos": 2, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "BR-SIGNALING KINASE1 physically associates with FLAGELLIN SENSING2 and regulates plant innate immunity in Arabidopsis.", "journal": "The Plant cell", "date": "2013-03", "authors": "Shi Hua, Shen Qiujing, Qi Yiping, Yan Haojie, Nie Haozhen, Chen Yongfang, Zhao Ting, Katagiri Fumiaki, Tang Dingzhong", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23532072", "url": "https://glygen.org/publication/PubMed/23532072" } ] } ], "crossref": [ { "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23532072", "url": "https://glygen.org/publication/PubMed/23532072", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "G", "start_aa": "G", "up_seq": "M", "down_seq": "CCQSLFSGDNPLGKDGVQPQ", "mutagenesis": [ { "sequence_org": "G", "sequence_mut": "A", "comment": "Abolishes plasma membrane localization; enhances susceptibility to fungal and bacterial pathogens.", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "PubMed", "id": "23532072", "url": "https://glygen.org/publication/PubMed/23532072" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.443.443", "start_pos": 443, "end_pos": 443, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "BR-SIGNALING KINASE1 physically associates with FLAGELLIN SENSING2 and regulates plant innate immunity in Arabidopsis.", "journal": "The Plant cell", "date": "2013-03", "authors": "Shi Hua, Shen Qiujing, Qi Yiping, Yan Haojie, Nie Haozhen, Chen Yongfang, Zhao Ting, Katagiri Fumiaki, Tang Dingzhong", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23532072", "url": "https://glygen.org/publication/PubMed/23532072" } ] } ], "crossref": [ { "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23532072", "url": "https://glygen.org/publication/PubMed/23532072", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "IDCYSQFIDVGTMVSPTVFG", "down_seq": "RSLCYLLCDQPDAALRDAMQ", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "Q", "comment": "In bsk1-1; enhances susceptibility to fungal and bacterial pathogens.", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "PubMed", "id": "23532072", "url": "https://glygen.org/publication/PubMed/23532072" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.228.228", "start_pos": 228, "end_pos": 228, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana.", "journal": "Proteomics", "date": "2008-09", "authors": "Whiteman Sally-Anne, Serazetdinova Liliya, Jones Alexandra M E, Sanders Dale, Rathjen John, Peck Scott C, Maathuis Frans J M", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "In planta changes in protein phosphorylation induced by the plant hormone abscisic acid.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010-09-07", "authors": "Kline Kelli G, Barrett-Wilt Gregory A, Sussman Michael R", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EDGDPRLSCFGLMKNSRDGK", "down_seq": "YSTNLAYTPPEYLRNGRVTP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "18686298", "url": "https://glygen.org/publication/PubMed/18686298" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser228" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q944A7-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q944A7-1.230.230", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q944A7-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q944A7-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q944A7-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q944A7-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.229.229", "start_pos": 229, "end_pos": 229, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "DGDPRLSCFGLMKNSRDGKS", "down_seq": "STNLAYTPPEYLRNGRVTPE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ], "site_lbl": "Tyr229" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q944A7-1.228.228", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q944A7-1.230.230", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q944A7-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q944A7-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q944A7-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q944A7-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.231.231", "start_pos": 231, "end_pos": 231, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DPRLSCFGLMKNSRDGKSYS", "down_seq": "NLAYTPPEYLRNGRVTPESV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Thr231" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q944A7-1.228.228", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q944A7-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q944A7-1.230.230", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q944A7-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q944A7-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q944A7-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.235.235", "start_pos": 235, "end_pos": 235, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "SCFGLMKNSRDGKSYSTNLA", "down_seq": "TPPEYLRNGRVTPESVTYSF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Tyr235" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q944A7-1.228.228", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q944A7-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q944A7-1.230.230", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q944A7-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q944A7-1.236.236", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q944A7-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.236.236", "start_pos": 236, "end_pos": 236, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CFGLMKNSRDGKSYSTNLAY", "down_seq": "PPEYLRNGRVTPESVTYSFG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Thr236" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q944A7-1.228.228", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q944A7-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q944A7-1.230.230", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q944A7-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q944A7-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q944A7-1.240.240", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.240.240", "start_pos": 240, "end_pos": 240, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MKNSRDGKSYSTNLAYTPPE", "down_seq": "LRNGRVTPESVTYSFGTVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Tyr240" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q944A7-1.228.228", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q944A7-1.229.229", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q944A7-1.230.230", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q944A7-1.231.231", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q944A7-1.235.235", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q944A7-1.236.236", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.352.352", "start_pos": 352, "end_pos": 352, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TKSDVPSYVMLGIKKQEEAP", "down_seq": "TPQRPLSPLGEACSRMDLTA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser352" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q944A7-1.353.353", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q944A7-1.359.359", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q944A7-1.366.366", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.353.353", "start_pos": 353, "end_pos": 353, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KSDVPSYVMLGIKKQEEAPS", "down_seq": "PQRPLSPLGEACSRMDLTAI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Thr353" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q944A7-1.352.352", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q944A7-1.359.359", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q944A7-1.366.366", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.359.359", "start_pos": 359, "end_pos": 359, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "YVMLGIKKQEEAPSTPQRPL", "down_seq": "PLGEACSRMDLTAIHQILVM", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ], "site_lbl": "Ser359" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q944A7-1.352.352", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q944A7-1.353.353", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q944A7-1.366.366", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.366.366", "start_pos": 366, "end_pos": 366, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant Physiol.", "date": "2009", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KQEEAPSTPQRPLSPLGEAC", "down_seq": "RMDLTAIHQILVMTHYRDDE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ], "site_lbl": "Ser366" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q944A7-1.352.352", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q944A7-1.353.353", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q944A7-1.359.359", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.388.388", "start_pos": 388, "end_pos": 388, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "MDLTAIHQILVMTHYRDDEG", "down_seq": "NELSFQEWTQQMKDMLDARK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ], "site_lbl": "Thr388" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "upstream", "id": "Q944A7-1.392.392", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q944A7-1.392.392", "start_pos": 392, "end_pos": 392, "uniprot_canonical_ac": "Q944A7-1", "length": 512, "uniprot_id": "BSK1_ARATH", "protein_name": "Serine/threonine-protein kinase BSK1", "refseq_ac": "NP_567980", "refseq_name": "BR-signaling kinase 1", "gene_name": "BSK1", "gene_names_uniprotkb": "BSK1; F23E12.210", "gene_names_refseq": "BR-signaling kinase 1; BSK1; F23E12.210; F23E12_210; brassinosteroid-signaling kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.", "journal": "Plant Cell", "date": "2004", "authors": "N\u00fchse Thomas S, Stensballe Allan, Jensen Ole N, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q944A7", "url": "https://www.uniprot.org/uniprotkb/Q944A7" }, { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" } ] }, { "title": "Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses.", "journal": "The Plant journal : for cell and molecular biology", "date": "2007-09", "authors": "N\u00fchse Thomas S, Bottrill Andrew R, Jones Alexandra M E, Peck Scott C", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754", "database": "PubMed", "categories": [ "Other" ] }, { "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AIHQILVMTHYRDDEGTNEL", "down_seq": "FQEWTQQMKDMLDARKRGDQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q944A7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q944A7" }, { "database": "PubMed", "id": "15308754", "url": "https://glygen.org/publication/PubMed/15308754" }, { "database": "PubMed", "id": "17651370", "url": "https://glygen.org/publication/PubMed/17651370" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser392" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "2", "end_pos": "2" }, { "start_pos": "443", "end_pos": "443" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "229", "end_pos": "229" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "231", "end_pos": "231" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "236", "end_pos": "236" }, { "start_pos": "240", "end_pos": "240" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "353", "end_pos": "353" }, { "start_pos": "359", "end_pos": "359" }, { "start_pos": "366", "end_pos": "366" }, { "start_pos": "388", "end_pos": "388" }, { "start_pos": "392", "end_pos": "392" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q944A7-1.388.388", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q948R1-1.239.239", "start_pos": 239, "end_pos": 239, "uniprot_canonical_ac": "Q948R1-1", "length": 447, "uniprot_id": "PLA11_ARATH", "protein_name": "Phospholipase A(1) DAD1, chloroplastic", "refseq_ac": "NP_001324613", "refseq_name": "alpha/beta-Hydrolases superfamily protein", "gene_name": "DAD1", "gene_names_uniprotkb": "DAD1; T13E15.18", "gene_names_refseq": "DAD1; DEFECTIVE ANTHER DEHISCENCE 1; F16B22.45", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q948R1", "url": "https://www.uniprot.org/uniprotkb/Q948R1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TCLEWLENLRATLTHLPNGP", "down_seq": "GANLNGSNSGPMVESGFLSL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr239", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "239", "end_pos": "239" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q94AG2-1.104.104", "start_pos": 104, "end_pos": 104, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "4LSX", "url": "https://www.rcsb.org/structure/4LSX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSC", "url": "https://www.rcsb.org/structure/4LSC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] }, { "id": "7ODV", "url": "https://www.rcsb.org/structure/7ODV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OGO", "url": "https://www.rcsb.org/structure/7OGO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OGU", "url": "https://www.rcsb.org/structure/7OGU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSX|C|104", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "7ODV|BBB|104", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "7ODV|EEE|104", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "7OGO|EEE|104", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "7OGU|EEE|104", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "7OGU|BBB|104", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "HLVPELGVLKNLQYLELYSN", "down_seq": "ITGPIPSNLGNLTNLVSLDL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4LSX&bu=0&command=select+.C:104;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn104", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "4LSX", "database": "PDB", "url": "https://www.rcsb.org/sequence/4LSX" }, { "id": "4LSC", "database": "PDB", "url": "https://www.rcsb.org/sequence/4LSC" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" }, { "id": "7ODV", "database": "PDB", "url": "https://www.rcsb.org/structure/7ODV" }, { "id": "7OGO", "database": "PDB", "url": "https://www.rcsb.org/structure/7OGO" }, { "id": "7OGU", "database": "PDB", "url": "https://www.rcsb.org/structure/7OGU" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "upstream", "id": "Q94AG2-1.115.115", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.115.115", "start_pos": 115, "end_pos": 115, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] }, { "id": "7ODV", "url": "https://www.rcsb.org/structure/7ODV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OGO", "url": "https://www.rcsb.org/structure/7OGO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OGQ", "url": "https://www.rcsb.org/structure/7OGQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7ODV|BBB|115", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "7OGO|EEE|115", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "7OGQ|BBB|115", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LQYLELYSNNITGPIPSNLG", "down_seq": "LTNLVSLDLYLNSFSGPIPE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7ODV&bu=0&command=select+.BBB:115;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn115", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" }, { "id": "7ODV", "database": "PDB", "url": "https://www.rcsb.org/structure/7ODV" }, { "id": "7OGO", "database": "PDB", "url": "https://www.rcsb.org/structure/7OGO" }, { "id": "7OGQ", "database": "PDB", "url": "https://www.rcsb.org/structure/7OGQ" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q94AG2-1.104.104", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q94AG2-1.150.150", "start_pos": 150, "end_pos": 150, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanistic insight into a peptide hormone signaling complex mediating floral organ abscission.", "journal": "eLife", "date": "2016-04-08", "authors": "Santiago Julia, Brandt Benjamin, Wildhagen Mari, Hohmann Ulrich, Hothorn Ludwig A, Butenko Melinka A, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "27058169", "url": "https://glygen.org/publication/PubMed/27058169" } ] }, { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] }, { "title": "Allosteric receptor activation by the plant peptide hormone phytosulfokine.", "journal": "Nature", "date": "2015-09-10", "authors": "Wang Jizong, Li Hongju, Han Zhifu, Zhang Heqiao, Wang Tong, Lin Guangzhong, Chang Junbiao, Yang Weicai, Chai Jijie", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "26308901", "url": "https://glygen.org/publication/PubMed/26308901" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27058169", "url": "https://glygen.org/publication/PubMed/27058169", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "4LSX", "url": "https://www.rcsb.org/structure/4LSX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "26308901", "url": "https://glygen.org/publication/PubMed/26308901", "database": "PubMed", "categories": [ "Other" ] }, { "id": "5IYX", "url": "https://www.rcsb.org/structure/5IYX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4Z64", "url": "https://www.rcsb.org/structure/4Z64", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSC", "url": "https://www.rcsb.org/structure/4LSC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] }, { "id": "7OGU", "url": "https://www.rcsb.org/structure/7OGU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSC|A|150", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSX|D|150", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4LSX|C|150", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "4Z64|C|150", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5IYX|C|150", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "7OGU|HHH|150", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "7OGU|BBB|150", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SGPIPESLGKLSKLRFLRLN", "down_seq": "NSLTGSIPMSLTNITTLQVL", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4LSC&bu=0&command=select+.A:150;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn150", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "id": "27058169", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27058169" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "4LSX", "database": "PDB", "url": "https://www.rcsb.org/sequence/4LSX" }, { "id": "26308901", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/26308901" }, { "id": "5IYX", "database": "PDB", "url": "https://www.rcsb.org/sequence/5IYX" }, { "id": "4Z64", "database": "PDB", "url": "https://www.rcsb.org/sequence/4Z64" }, { "id": "4LSC", "database": "PDB", "url": "https://www.rcsb.org/sequence/4LSC" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" }, { "id": "7OGU", "database": "PDB", "url": "https://www.rcsb.org/structure/7OGU" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "upstream", "id": "Q94AG2-1.163.163", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.163.163", "start_pos": 163, "end_pos": 163, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] } ], "crossref": [ { "id": "7OGQ", "url": "https://www.rcsb.org/structure/7OGQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7OGQ|BBB|163", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "4LSX", "url": "https://www.rcsb.org/structure/4LSX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] }, { "id": "7ODV", "url": "https://www.rcsb.org/structure/7ODV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSX|D|163", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "7ODV|BBB|163", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LRFLRLNNNSLTGSIPMSLT", "down_seq": "ITTLQVLDLSNNRLSGSVPD", "glycosylation": [ { "glytoucan_ac": "G22768VO", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7OGQ&bu=0&command=select+.BBB:163;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn163", "evidence": [ { "id": "7OGQ", "database": "PDB", "url": "https://www.rcsb.org/structure/7OGQ" } ] }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4LSX&bu=0&command=select+.D:163;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn163", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "4LSX", "database": "PDB", "url": "https://www.rcsb.org/sequence/4LSX" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" }, { "id": "7ODV", "database": "PDB", "url": "https://www.rcsb.org/structure/7ODV" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q94AG2-1.150.150", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 1 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 1 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_n_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.184.184", "start_pos": 184, "end_pos": 184, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Mechanistic insight into a peptide hormone signaling complex mediating floral organ abscission.", "journal": "eLife", "date": "2016-04-08", "authors": "Santiago Julia, Brandt Benjamin, Wildhagen Mari, Hohmann Ulrich, Hothorn Ludwig A, Butenko Melinka A, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "27058169", "url": "https://glygen.org/publication/PubMed/27058169" } ] }, { "title": "Molecular mechanism for plant steroid receptor activation by somatic embryogenesis co-receptor kinases.", "journal": "Science (New York, N.Y.)", "date": "2013-08-23", "authors": "Santiago Julia, Henzler Christine, Hothorn Michael", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "27058169", "url": "https://glygen.org/publication/PubMed/27058169", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23929946", "url": "https://glygen.org/publication/PubMed/23929946", "database": "PubMed", "categories": [ "Other" ] }, { "id": "5IYX", "url": "https://www.rcsb.org/structure/5IYX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4LSC", "url": "https://www.rcsb.org/structure/4LSC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] }, { "id": "4LSC|A|184", "url": "", "database": "", "categories": [ "Other" ] }, { "id": "5IYX|C|184", "url": "", "database": "", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ITTLQVLDLSNNRLSGSVPD", "down_seq": "GSFSLFTPISFANNLDLCGP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4LSC&bu=0&command=select+.A:184;+center+selection;+zoom+selection" }, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn184", "evidence": [ { "id": "Q94AG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94AG2#ptm_processing" }, { "id": "27058169", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/27058169" }, { "id": "23929946", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/23929946" }, { "id": "5IYX", "database": "PDB", "url": "https://www.rcsb.org/sequence/5IYX" }, { "id": "4LSC", "database": "PDB", "url": "https://www.rcsb.org/sequence/4LSC" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "CPGSPPFSPPPPFIQPPPVS", "down_seq": "PSGYGITGAIAGGVAAGAAL", "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr230", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q94AG2-1.330.330", "start_pos": 330, "end_pos": 330, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Role of threonines in the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 activation loop in phosphorylation.", "journal": "The Journal of biological chemistry", "date": "2001-11-02", "authors": "Shah K, Vervoort J, de Vries S C", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "RGGFGKVYKGRLADGTLVAV", "down_seq": "RLKEERTPGGELQFQTEVEM", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "E", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q94AG2-1.325.325", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q94AG2-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q94AG2-1.346.346", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.459.459", "start_pos": 459, "end_pos": 459, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Role of threonines in the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 activation loop in phosphorylation.", "journal": "The Journal of biological chemistry", "date": "2001-11-02", "authors": "Shah K, Vervoort J, de Vries S C", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] }, { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2", "database": "PRO", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EEFEAVVGDFGLAKLMDYKD", "down_seq": "HVTTAVRGTIGHIAPEYLST", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] }, { "sequence_org": "T", "sequence_mut": "E", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PRO", "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2" } ], "site_lbl": "Thr459" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q94AG2-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q94AG2-1.462.462", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q94AG2-1.463.463", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q94AG2-1.468.468", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q94AG2-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q94AG2-1.478.478", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q94AG2-1.479.479", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.462.462", "start_pos": 462, "end_pos": 462, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Role of threonines in the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 activation loop in phosphorylation.", "journal": "The Journal of biological chemistry", "date": "2001-11-02", "authors": "Shah K, Vervoort J, de Vries S C", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] }, { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2", "database": "PRO", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "EAVVGDFGLAKLMDYKDTHV", "down_seq": "TAVRGTIGHIAPEYLSTGKS", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Decreased kinase activity. Loss of kinase activity; when associated with A,E-463 and A,E-468.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] }, { "sequence_org": "T", "sequence_mut": "E", "comment": "Decreased kinase activity. Loss of kinase activity; when associated with A,E-463 and A,E-468.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PRO", "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2" } ], "site_lbl": "Thr462" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q94AG2-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q94AG2-1.459.459", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q94AG2-1.463.463", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q94AG2-1.468.468", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q94AG2-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q94AG2-1.478.478", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q94AG2-1.479.479", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.463.463", "start_pos": 463, "end_pos": 463, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Role of threonines in the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 activation loop in phosphorylation.", "journal": "The Journal of biological chemistry", "date": "2001-11-02", "authors": "Shah K, Vervoort J, de Vries S C", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] }, { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2", "database": "PRO", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AVVGDFGLAKLMDYKDTHVT", "down_seq": "AVRGTIGHIAPEYLSTGKSS", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of autophosphorylation. Loss of kinase activity; when associated with A,E-462 and A,E-468.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] }, { "sequence_org": "T", "sequence_mut": "E", "comment": "Loss of autophosphorylation. Loss of kinase activity; when associated with A,E-462 and A,E-468.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PRO", "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2" } ], "site_lbl": "Thr463" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q94AG2-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q94AG2-1.459.459", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q94AG2-1.462.462", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q94AG2-1.468.468", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q94AG2-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q94AG2-1.478.478", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q94AG2-1.479.479", "categories": [ "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q94AG2-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.468.468", "start_pos": 468, "end_pos": 468, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Role of threonines in the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 activation loop in phosphorylation.", "journal": "The Journal of biological chemistry", "date": "2001-11-02", "authors": "Shah K, Vervoort J, de Vries S C", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] }, { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2", "database": "PRO", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "FGLAKLMDYKDTHVTTAVRG", "down_seq": "IGHIAPEYLSTGKSSEKTDV", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of kinase activity. Loss of kinase activity; when associated with A,E-462 and A,E-463.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] }, { "sequence_org": "T", "sequence_mut": "E", "comment": "Loss of kinase activity. Loss of kinase activity; when associated with A,E-462 and A,E-463.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://glygen.org/publication/PubMed/11509554" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" }, { "database": "PRO", "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2" } ], "site_lbl": "Thr468" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q94AG2-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q94AG2-1.459.459", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q94AG2-1.462.462", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q94AG2-1.463.463", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q94AG2-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q94AG2-1.478.478", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q94AG2-1.479.479", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q94AG2-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.541.541", "start_pos": 541, "end_pos": 541, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "WVKGLLKEKKLEMLVDPDLQ", "down_seq": "NYEERELEQVIQVALLCTQG", "mutagenesis": [ { "sequence_org": "T", "sequence_mut": "A", "comment": "No effect. Reduction of autophosphorylation; when associated with A-570.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Thr541" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "mutagenesis_flag", "phosphorylation_flag" ], "glycosylation": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q94AG2-1.543.543", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q94AG2-1.559.559", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.562.562", "start_pos": 562, "end_pos": 562, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NYEERELEQVIQVALLCTQG", "down_seq": "PMERPKMSEVVRMLEGDGLA", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of autophosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q94AG2-1.543.543", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q94AG2-1.559.559", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q94AG2-1.570.570", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.570.570", "start_pos": 570, "end_pos": 570, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QVIQVALLCTQGSPMERPKM", "down_seq": "EVVRMLEGDGLAEKWDEWQK", "mutagenesis": [ { "sequence_org": "S", "sequence_mut": "A", "comment": "No effect. Reduction of autophosphorylation; when associated with A-541.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q94AG2-1.559.559", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q94AG2-1.562.562", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.291.291", "start_pos": 291, "end_pos": 291, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "FFDVPAEEDPEVHLGQLKRF", "down_seq": "LRELQVASDGFSNKNILGRG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser291" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q94AG2-1.299.299", "categories": [ "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q94AG2-1.303.303", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.299.299", "start_pos": 299, "end_pos": 299, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DPEVHLGQLKRFSLRELQVA", "down_seq": "DGFSNKNILGRGGFGKVYKG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser299" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q94AG2-1.291.291", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q94AG2-1.303.303", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.303.303", "start_pos": 303, "end_pos": 303, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2", "database": "PRO", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "HLGQLKRFSLRELQVASDGF", "down_seq": "NKNILGRGGFGKVYKGRLAD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "PRO", "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser303" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q94AG2-1.291.291", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q94AG2-1.299.299", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.325.325", "start_pos": 325, "end_pos": 325, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KNILGRGGFGKVYKGRLADG", "down_seq": "LVAVKRLKEERTPGGELQFQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Thr325" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "upstream", "id": "Q94AG2-1.330.330", "categories": [ "mutagenesis_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q94AG2-1.337.337", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.337.337", "start_pos": 337, "end_pos": 337, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2", "database": "PRO", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "YKGRLADGTLVAVKRLKEER", "down_seq": "PGGELQFQTEVEMISMAVHR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "PRO", "id": "Q94AG2", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Thr337" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q94AG2-1.325.325", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q94AG2-1.330.330", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q94AG2-1.346.346", "categories": [ "phosphorylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q94AG2-1.352.352", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.346.346", "start_pos": 346, "end_pos": 346, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LVAVKRLKEERTPGGELQFQ", "down_seq": "EVEMISMAVHRNLLRLRGFC", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Thr346" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q94AG2-1.330.330", "categories": [ "mutagenesis_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q94AG2-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q94AG2-1.352.352", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.352.352", "start_pos": 352, "end_pos": 352, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKEERTPGGELQFQTEVEMI", "down_seq": "MAVHRNLLRLRGFCMTPTER", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser352" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q94AG2-1.337.337", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q94AG2-1.346.346", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.383.383", "start_pos": 383, "end_pos": 383, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RGFCMTPTERLLVYPYMANG", "down_seq": "VASCLRERPPSQPPLDWPTR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser383" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q94AG2-1.386.386", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q94AG2-1.394.394", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q94AG2-1.402.402", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.386.386", "start_pos": 386, "end_pos": 386, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "CMTPTERLLVYPYMANGSVA", "down_seq": "CLRERPPSQPPLDWPTRKRI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "site_lbl": "Ser386" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q94AG2-1.383.383", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q94AG2-1.394.394", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q94AG2-1.402.402", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q94AG2-1.394.394", "start_pos": 394, "end_pos": 394, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LVYPYMANGSVASCLRERPP", "down_seq": "QPPLDWPTRKRIALGSARGL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser394" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q94AG2-1.383.383", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q94AG2-1.386.386", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q94AG2-1.402.402", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.402.402", "start_pos": 402, "end_pos": 402, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GSVASCLRERPPSQPPLDWP", "down_seq": "RKRIALGSARGLSYLHDHCD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Thr402" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q94AG2-1.383.383", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q94AG2-1.386.386", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q94AG2-1.394.394", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q94AG2-1.415.415", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.415.415", "start_pos": 415, "end_pos": 415, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QPPLDWPTRKRIALGSARGL", "down_seq": "YLHDHCDPKIIHRDVKAANI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser415" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q94AG2-1.402.402", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.456.456", "start_pos": 456, "end_pos": 456, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LLDEEFEAVVGDFGLAKLMD", "down_seq": "KDTHVTTAVRGTIGHIAPEY", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Tyr456" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q94AG2-1.459.459", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q94AG2-1.462.462", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q94AG2-1.463.463", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q94AG2-1.468.468", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 20, "direction": "upstream", "id": "Q94AG2-1.476.476", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.476.476", "start_pos": 476, "end_pos": 476, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "YKDTHVTTAVRGTIGHIAPE", "down_seq": "LSTGKSSEKTDVFGYGIMLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Tyr476" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q94AG2-1.456.456", "categories": [ "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q94AG2-1.459.459", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q94AG2-1.462.462", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q94AG2-1.463.463", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q94AG2-1.468.468", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q94AG2-1.478.478", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q94AG2-1.479.479", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q94AG2-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.478.478", "start_pos": 478, "end_pos": 478, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DTHVTTAVRGTIGHIAPEYL", "down_seq": "TGKSSEKTDVFGYGIMLLEL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser478" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q94AG2-1.459.459", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q94AG2-1.462.462", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q94AG2-1.463.463", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q94AG2-1.468.468", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q94AG2-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q94AG2-1.479.479", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q94AG2-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.479.479", "start_pos": 479, "end_pos": 479, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "THVTTAVRGTIGHIAPEYLS", "down_seq": "GKSSEKTDVFGYGIMLLELI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Thr479" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q94AG2-1.459.459", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q94AG2-1.462.462", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q94AG2-1.463.463", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q94AG2-1.468.468", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q94AG2-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q94AG2-1.478.478", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q94AG2-1.483.483", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.483.483", "start_pos": 483, "end_pos": 483, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] }, { "title": "Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants.", "journal": "Journal of proteomics", "date": "2018-06-15", "authors": "Al-Momani Shireen, Qi Da, Ren Zhe, Jones Andrew R", "evidence": [ { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "TAVRGTIGHIAPEYLSTGKS", "down_seq": "EKTDVFGYGIMLLELITGQR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" }, { "database": "PubMed", "id": "29654922", "url": "https://glygen.org/publication/PubMed/29654922" } ], "site_lbl": "Ser483" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 20, "direction": "downstream", "id": "Q94AG2-1.463.463", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q94AG2-1.468.468", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q94AG2-1.476.476", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q94AG2-1.478.478", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q94AG2-1.479.479", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.543.543", "start_pos": 543, "end_pos": 543, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KGLLKEKKLEMLVDPDLQTN", "down_seq": "EERELEQVIQVALLCTQGSP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Tyr543" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q94AG2-1.541.541", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q94AG2-1.559.559", "categories": [ "phosphorylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q94AG2-1.562.562", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.559.559", "start_pos": 559, "end_pos": 559, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LQTNYEERELEQVIQVALLC", "down_seq": "QGSPMERPKMSEVVRMLEGD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Thr559" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q94AG2-1.541.541", "categories": [ "mutagenesis_flag", "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q94AG2-1.543.543", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q94AG2-1.562.562", "categories": [ "mutagenesis_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q94AG2-1.570.570", "categories": [ "mutagenesis_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.606.606", "start_pos": 606, "end_pos": 606, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DEWQKVEILREEIDLSPNPN", "down_seq": "DWILDSTYNLHAVELSGPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser606" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "upstream", "id": "Q94AG2-1.612.612", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q94AG2-1.613.613", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q94AG2-1.614.614", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q94AG2-1.622.622", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.612.612", "start_pos": 612, "end_pos": 612, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EILREEIDLSPNPNSDWILD", "down_seq": "TYNLHAVELSGPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser612" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q94AG2-1.606.606", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q94AG2-1.613.613", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q94AG2-1.614.614", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q94AG2-1.622.622", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.613.613", "start_pos": 613, "end_pos": 613, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ILREEIDLSPNPNSDWILDS", "down_seq": "YNLHAVELSGPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Thr613" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q94AG2-1.606.606", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q94AG2-1.612.612", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q94AG2-1.614.614", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q94AG2-1.622.622", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.614.614", "start_pos": 614, "end_pos": 614, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "LREEIDLSPNPNSDWILDST", "down_seq": "NLHAVELSGPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Tyr614" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q94AG2-1.606.606", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q94AG2-1.612.612", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q94AG2-1.613.613", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q94AG2-1.622.622", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AG2-1.622.622", "start_pos": 622, "end_pos": 622, "uniprot_canonical_ac": "Q94AG2-1", "length": 625, "uniprot_id": "SERK1_ARATH", "protein_name": "Somatic embryogenesis receptor kinase 1", "refseq_ac": "NP_177328", "refseq_name": "somatic embryogenesis receptor-like kinase 1", "gene_name": "SERK1", "gene_names_uniprotkb": "SERK1; F14O23.21; F14O23_24", "gene_names_refseq": "ATSERK1; F14O23.21; F14O23_21; SERK1; SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1; somatic embryogenesis receptor-like kinase 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Identification of in vitro phosphorylation sites in the Arabidopsis thaliana somatic embryogenesis receptor-like kinases.", "journal": "Proteomics", "date": "2009-01", "authors": "Karlova Rumyana, Boeren Sjef, van Dongen Walter, Kwaaitaal Mark, Aker Jose, Vervoort Jacques, de Vries Sacco", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "reference": [ { "type": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" } ] } ], "crossref": [ { "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "PNPNSDWILDSTYNLHAVEL", "down_seq": "GPR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "19105183", "url": "https://glygen.org/publication/PubMed/19105183" }, { "database": "iPTMnet", "id": "Q94AG2", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AG2" } ], "site_lbl": "Ser622" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "104", "end_pos": "104" }, { "start_pos": "115", "end_pos": "115" }, { "start_pos": "150", "end_pos": "150" }, { "start_pos": "163", "end_pos": "163" }, { "start_pos": "184", "end_pos": "184" }, { "start_pos": "230", "end_pos": "230" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "330", "end_pos": "330" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "562", "end_pos": "562" }, { "start_pos": "570", "end_pos": "570" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "291", "end_pos": "291" }, { "start_pos": "299", "end_pos": "299" }, { "start_pos": "303", "end_pos": "303" }, { "start_pos": "325", "end_pos": "325" }, { "start_pos": "337", "end_pos": "337" }, { "start_pos": "346", "end_pos": "346" }, { "start_pos": "352", "end_pos": "352" }, { "start_pos": "383", "end_pos": "383" }, { "start_pos": "386", "end_pos": "386" }, { "start_pos": "394", "end_pos": "394" }, { "start_pos": "402", "end_pos": "402" }, { "start_pos": "415", "end_pos": "415" }, { "start_pos": "456", "end_pos": "456" }, { "start_pos": "459", "end_pos": "459" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "463", "end_pos": "463" }, { "start_pos": "468", "end_pos": "468" }, { "start_pos": "476", "end_pos": "476" }, { "start_pos": "478", "end_pos": "478" }, { "start_pos": "479", "end_pos": "479" }, { "start_pos": "483", "end_pos": "483" }, { "start_pos": "541", "end_pos": "541" }, { "start_pos": "543", "end_pos": "543" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "606", "end_pos": "606" }, { "start_pos": "612", "end_pos": "612" }, { "start_pos": "613", "end_pos": "613" }, { "start_pos": "614", "end_pos": "614" }, { "start_pos": "622", "end_pos": "622" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q94AG2-1.606.606", "categories": [ "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q94AG2-1.612.612", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q94AG2-1.613.613", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q94AG2-1.614.614", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AH6-1.682.682", "start_pos": 682, "end_pos": 682, "uniprot_canonical_ac": "Q94AH6-1", "length": 738, "uniprot_id": "CUL1_ARATH", "protein_name": "Cullin-1", "refseq_ac": "NP_001031575", "refseq_name": "cullin 1", "gene_name": "CUL1", "gene_names_uniprotkb": "CUL1; T10P11.26", "gene_names_refseq": "ATCUL1; AUXIN RESISTANT 6; AXR6; CUL1; T10P11.26; T10P11_26; cullin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein Degradation.", "journal": "The Plant cell", "date": "2004", "authors": "Feng S, Shen Y, Sullivan JA, Rubio V, Xiong Y, Sun TP, Deng XW", "evidence": [ { "database": "UniProtKB", "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6" } ], "reference": [ { "type": "PubMed", "id": "15208391", "url": "https://glygen.org/publication/PubMed/15208391" } ] }, { "title": "The Arabidopsis cullin AtCUL1 is modified by the ubiquitin-related protein RUB1.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1999-12-21", "authors": "del Pozo J C, Estelle M", "evidence": [ { "database": "UniProtKB", "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6" } ], "reference": [ { "type": "PubMed", "id": "10611386", "url": "https://glygen.org/publication/PubMed/10611386" } ] } ], "crossref": [ { "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "15208391", "url": "https://glygen.org/publication/PubMed/15208391", "database": "PubMed", "categories": [ "Other" ] }, { "id": "10611386", "url": "https://glygen.org/publication/PubMed/10611386", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "VEDVDKDRRYAIDAAIVRIM", "down_seq": "SRKVLGHQQLVSECVEQLSR", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "M", "comment": "No neddylation.", "evidence": [ { "database": "UniProtKB", "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6" }, { "database": "PubMed", "id": "15208391", "url": "https://glygen.org/publication/PubMed/15208391" }, { "database": "PubMed", "id": "10611386", "url": "https://glygen.org/publication/PubMed/10611386" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "682", "end_pos": "682" }, { "start_pos": "712", "end_pos": "712" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "720", "end_pos": "720" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AH6-1.712.712", "start_pos": 712, "end_pos": 712, "uniprot_canonical_ac": "Q94AH6-1", "length": 738, "uniprot_id": "CUL1_ARATH", "protein_name": "Cullin-1", "refseq_ac": "NP_001031575", "refseq_name": "cullin 1", "gene_name": "CUL1", "gene_names_uniprotkb": "CUL1; T10P11.26", "gene_names_refseq": "ATCUL1; AUXIN RESISTANT 6; AXR6; CUL1; T10P11.26; T10P11_26; cullin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "The Arabidopsis cullin AtCUL1 is modified by the ubiquitin-related protein RUB1.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1999-12-21", "authors": "del Pozo J C, Estelle M", "evidence": [ { "database": "UniProtKB", "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6" } ], "reference": [ { "type": "PubMed", "id": "10611386", "url": "https://glygen.org/publication/PubMed/10611386" } ] } ], "crossref": [ { "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "10611386", "url": "https://glygen.org/publication/PubMed/10611386", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "LVSECVEQLSRMFKPDIKAI", "down_seq": "KRMEDLITRDYLERDKENPN", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "M", "comment": "No change in neddylation.", "evidence": [ { "database": "UniProtKB", "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6" }, { "database": "PubMed", "id": "10611386", "url": "https://glygen.org/publication/PubMed/10611386" } ] } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "682", "end_pos": "682" }, { "start_pos": "712", "end_pos": "712" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "720", "end_pos": "720" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "upstream", "id": "Q94AH6-1.720.720", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q94AH6-1.723.723", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AH6-1.720.720", "start_pos": 720, "end_pos": 720, "uniprot_canonical_ac": "Q94AH6-1", "length": 738, "uniprot_id": "CUL1_ARATH", "protein_name": "Cullin-1", "refseq_ac": "NP_001031575", "refseq_name": "cullin 1", "gene_name": "CUL1", "gene_names_uniprotkb": "CUL1; T10P11.26", "gene_names_refseq": "ATCUL1; AUXIN RESISTANT 6; AXR6; CUL1; T10P11.26; T10P11_26; cullin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q94AH6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AH6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LSRMFKPDIKAIKKRMEDLI", "down_seq": "RDYLERDKENPNMFRYLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94AH6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AH6" } ], "site_lbl": "Thr720" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "682", "end_pos": "682" }, { "start_pos": "712", "end_pos": "712" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "720", "end_pos": "720" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 8, "direction": "downstream", "id": "Q94AH6-1.712.712", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q94AH6-1.723.723", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q94AH6-1.723.723", "start_pos": 723, "end_pos": 723, "uniprot_canonical_ac": "Q94AH6-1", "length": 738, "uniprot_id": "CUL1_ARATH", "protein_name": "Cullin-1", "refseq_ac": "NP_001031575", "refseq_name": "cullin 1", "gene_name": "CUL1", "gene_names_uniprotkb": "CUL1; T10P11.26", "gene_names_refseq": "ATCUL1; AUXIN RESISTANT 6; AXR6; CUL1; T10P11.26; T10P11_26; cullin 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AH6", "url": "https://www.uniprot.org/uniprotkb/Q94AH6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q94AH6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AH6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "MFKPDIKAIKKRMEDLITRD", "down_seq": "LERDKENPNMFRYLA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94AH6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AH6" } ], "site_lbl": "Tyr723" } ], "all_sites": [ { "type": "mutagenesis", "site_list": [ { "start_pos": "682", "end_pos": "682" }, { "start_pos": "712", "end_pos": "712" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "720", "end_pos": "720" }, { "start_pos": "723", "end_pos": "723" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q94AH6-1.712.712", "categories": [ "mutagenesis_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q94AH6-1.720.720", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q94AI7-1.1111.1111", "start_pos": 1111, "end_pos": 1111, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q94AI7", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q94AI7" }, { "database": "O-GlcNAc Atlas", "id": "Q94AI7", "url": "https://oglcnac.org/atlas/detail/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AI7", "url": "https://oglcnac.org/atlas/detail/Q94AI7", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IFEPLESEGKWGVAPPAENG", "down_seq": "ASGAPTAPSVGASASDQPQR", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser1111", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q94AI7", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q94AI7" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q94AI7-1.1113.1113", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.1113.1113", "start_pos": 1113, "end_pos": 1113, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q94AI7", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q94AI7" }, { "database": "O-GlcNAc Atlas", "id": "Q94AI7", "url": "https://oglcnac.org/atlas/detail/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AI7", "url": "https://oglcnac.org/atlas/detail/Q94AI7", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "EPLESEGKWGVAPPAENGSA", "down_seq": "GAPTAPSVGASASDQPQR", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser1113", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q94AI7", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q94AI7" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q94AI7-1.1111.1111", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q94AI7", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q94AI7" }, { "database": "O-GlcNAc Atlas", "id": "Q94AI7", "url": "https://oglcnac.org/atlas/detail/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AI7", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q94AI7", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q94AI7", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q94AI7" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.176.176", "start_pos": 176, "end_pos": 176, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "TOPLESS regulates apical embryonic fate in Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "2006-06-09", "authors": "Long Jeff A, Ohno Carolyn, Smith Zachery R, Meyerowitz Elliot M", "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "16763149", "url": "https://glygen.org/publication/PubMed/16763149" } ] }, { "title": "APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19.", "journal": "Development (Cambridge, England)", "date": "2012-11", "authors": "Krogan Naden T, Hogan Kendra, Long Jeff A", "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23034631", "url": "https://glygen.org/publication/PubMed/23034631" } ] } ], "crossref": [ { "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16763149", "url": "https://glygen.org/publication/PubMed/16763149", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23034631", "url": "https://glygen.org/publication/PubMed/23034631", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LFRDKLQFPTLRNSRLRTLI", "down_seq": "QSLNWQHQLCKNPRPNPDIK", "mutagenesis": [ { "sequence_org": "N", "sequence_mut": "H", "comment": "In tpl-1; temperature sensitive gain of function; transforms the shoot pole into a second root pole. No effect on the interaction with IAA12 od HAD19, but loss of interaction with AP2.", "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" }, { "database": "PubMed", "id": "16763149", "url": "https://glygen.org/publication/PubMed/16763149" }, { "database": "PubMed", "id": "23034631", "url": "https://glygen.org/publication/PubMed/23034631" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.92.92", "start_pos": 92, "end_pos": 92, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "TOPLESS regulates apical embryonic fate in Arabidopsis.", "journal": "Science (New York, N.Y.)", "date": "2006-06-09", "authors": "Long Jeff A, Ohno Carolyn, Smith Zachery R, Meyerowitz Elliot M", "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "16763149", "url": "https://glygen.org/publication/PubMed/16763149" } ] } ], "crossref": [ { "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "16763149", "url": "https://glygen.org/publication/PubMed/16763149", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "K", "start_aa": "K", "up_seq": "IFFEIRKQKYLEALDKHDRP", "down_seq": "AVDILVKDLKVFSTFNEELF", "mutagenesis": [ { "sequence_org": "K", "sequence_mut": "M", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" }, { "database": "PubMed", "id": "16763149", "url": "https://glygen.org/publication/PubMed/16763149" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.133.133", "start_pos": 133, "end_pos": 133, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "KEITQLLTLENFRENEQLSK", "down_seq": "GDTKSARAIMLVELKKLIEA", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "site_lbl": "Tyr133" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q94AI7-1.214.214", "start_pos": 214, "end_pos": 214, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.", "journal": "Journal of proteome research", "date": "2008-06", "authors": "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert", "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" }, { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" } ] }, { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" }, { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.", "journal": "Journal of proteomics", "date": "2009-04-13", "authors": "Jones Alexandra M E, MacLean Daniel, Studholme David J, Serna-Sanz Antonio, Andreasson Erik, Rathjen John P, Peck Scott C", "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" }, { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Characterization of the phosphoproteome of mature Arabidopsis pollen.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-10", "authors": "Mayank Pururawa, Grossman Jonas, Wuest Samuel, Boisson-Dernier Aur\u00e9lien, Roschitzki Bernd, Nanni Paolo, N\u00fchse Thomas, Grossniklaus Ueli", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" } ] }, { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "A survey of the Arabidopsis thaliana mitochondrial phosphoproteome.", "journal": "Proteomics", "date": "2009-09", "authors": "Ito Jun, Taylor Nicolas L, Castleden Ian, Weckwerth Wolfram, Millar A Harvey, Heazlewood Joshua L", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" } ] }, { "title": "In planta changes in protein phosphorylation induced by the plant hormone abscisic acid.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010-09-07", "authors": "Kline Kelli G, Barrett-Wilt Gregory A, Sussman Michael R", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC).", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-08", "authors": "Xue Liang, Wang Pengcheng, Wang Lianshui, Renzi Emily, Radivojac Predrag, Tang Haixu, Arnold Randy, Zhu Jian-Kang, Tao W Andy", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-12", "authors": "Yang Zhu, Guo Guangyu, Zhang Manyu, Liu Claire Y, Hu Qin, Lam Henry, Cheng Han, Xue Yu, Li Jiayang, Li Ning", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563", "database": "PubMed", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DIKTLFVDHSCGPPNGARAP", "down_seq": "PVNNPLLGGIPKAGGFPPLG", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" }, { "database": "PubMed", "id": "18433157", "url": "https://glygen.org/publication/PubMed/18433157" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "19245862", "url": "https://glygen.org/publication/PubMed/19245862" }, { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "22631563", "url": "https://glygen.org/publication/PubMed/22631563" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "19688752", "url": "https://glygen.org/publication/PubMed/19688752" }, { "database": "PubMed", "id": "20733066", "url": "https://glygen.org/publication/PubMed/20733066" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23660473", "url": "https://glygen.org/publication/PubMed/23660473" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24043427", "url": "https://glygen.org/publication/PubMed/24043427" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser214" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.286.286", "start_pos": 286, "end_pos": 286, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.", "journal": "Plant physiology", "date": "2009-06", "authors": "Reiland Sonja, Messerli Ga\u00eblle, Baerenfaller Katja, Gerrits Bertran, Endler Anne, Grossmann Jonas, Gruissem Wilhelm, Baginsky Sacha", "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" }, { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" } ] }, { "title": "Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2011-08-02", "authors": "Reiland Sonja, Finazzi Giovanni, Endler Anne, Willig Adrian, Baerenfaller Katja, Grossmann Jonas, Gerrits Bertran, Rutishauser Dorothea, Gruissem Wilhelm, Rochaix Jean-David, Baginsky Sacha", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis.", "journal": "Journal of proteome research", "date": "2014-04-04", "authors": "Rayapuram Naganand, Bonhomme Ludovic, Bigeard Jean, Haddadou Kahina, Przybylski C\u00e9dric, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835", "database": "PubMed", "categories": [ "Other" ] }, { "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "SAGAIALGGPSIPAALKHPR", "down_seq": "PPTNASLDYPSADSEHVSKR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" }, { "database": "PubMed", "id": "19376835", "url": "https://glygen.org/publication/PubMed/19376835" }, { "database": "PubMed", "id": "21768351", "url": "https://glygen.org/publication/PubMed/21768351" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "24601666", "url": "https://glygen.org/publication/PubMed/24601666" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Thr286" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q94AI7-1.289.289", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q94AI7-1.292.292", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.289.289", "start_pos": 289, "end_pos": 289, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AIALGGPSIPAALKHPRTPP", "down_seq": "NASLDYPSADSEHVSKRTRP", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Thr289" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q94AI7-1.286.286", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q94AI7-1.292.292", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.292.292", "start_pos": 292, "end_pos": 292, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LGGPSIPAALKHPRTPPTNA", "down_seq": "LDYPSADSEHVSKRTRPMGI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser292" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q94AI7-1.286.286", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q94AI7-1.289.289", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.688.688", "start_pos": 688, "end_pos": 688, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MANSDGLRLLHTFENISSES", "down_seq": "KPAINSIAAAAAAAATSAGH", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser688" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q94AI7-1.705.705", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.705.705", "start_pos": 705, "end_pos": 705, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative Phosphoproteomic Analysis Reveals Shared and Specific Targets of Arabidopsis Mitogen-Activated Protein Kinases (MAPKs) MPK3, MPK4, and MPK6.", "journal": "Molecular & cellular proteomics : MCP", "date": "2018-01", "authors": "Rayapuram Naganand, Bigeard Jean, Alhoraibi Hanna, Bonhomme Ludovic, Hesse Anne-Marie, Vinh Jo\u00eblle, Hirt Heribert, Pflieger Delphine", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ] } ], "crossref": [ { "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SESSKPAINSIAAAAAAAAT", "down_seq": "AGHADRSANVVSIQGMNGDS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" }, { "database": "PubMed", "id": "29167316", "url": "https://glygen.org/publication/PubMed/29167316" } ], "site_lbl": "Ser705" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q94AI7-1.688.688", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.736.736", "start_pos": 736, "end_pos": 736, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] } ], "crossref": [ { "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VSIQGMNGDSRNMVDVKPVI", "down_seq": "EESNDKSKIWKLTEVSEPSQ", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ], "site_lbl": "Thr736" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q94AI7-1.739.739", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94AI7-1.739.739", "start_pos": 739, "end_pos": 739, "uniprot_canonical_ac": "Q94AI7-1", "length": 1131, "uniprot_id": "TPL_ARATH", "protein_name": "Protein TOPLESS", "refseq_ac": "NP_001031050", "refseq_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "TPL", "gene_names_uniprotkb": "TPL; F7H2.9; WSIP1", "gene_names_refseq": "F7H2.9; F7H2_9; TOPLESS; TPL; WSIP1; WUS-INTERACTING PROTEIN 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AI7", "url": "https://www.uniprot.org/uniprotkb/Q94AI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QGMNGDSRNMVDVKPVITEE", "down_seq": "NDKSKIWKLTEVSEPSQCRS", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94AI7", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94AI7" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser739" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "1111", "end_pos": "1111" }, { "start_pos": "1113", "end_pos": "1113" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "176", "end_pos": "176" }, { "start_pos": "92", "end_pos": "92" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "133", "end_pos": "133" }, { "start_pos": "214", "end_pos": "214" }, { "start_pos": "286", "end_pos": "286" }, { "start_pos": "289", "end_pos": "289" }, { "start_pos": "292", "end_pos": "292" }, { "start_pos": "688", "end_pos": "688" }, { "start_pos": "705", "end_pos": "705" }, { "start_pos": "736", "end_pos": "736" }, { "start_pos": "739", "end_pos": "739" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q94AI7-1.736.736", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94JQ6-1.958.958", "start_pos": 958, "end_pos": 958, "uniprot_canonical_ac": "Q94JQ6-1", "length": 1084, "uniprot_id": "CESA6_ARATH", "protein_name": "Cellulose synthase A catalytic subunit 6 [UDP-forming]", "refseq_ac": "NP_201279", "refseq_name": "cellulose synthase 6", "gene_name": "CESA6", "gene_names_uniprotkb": "CESA6; IXR2; MVP7.7; PRC1; QUI", "gene_names_refseq": "CESA6; E112; ISOXABEN RESISTANT 2; IXR2; MVP7.7; MVP7_7; PRC1; PROCUSTE 1; cellulose synthase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94JQ6", "url": "https://www.uniprot.org/uniprotkb/Q94JQ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q94JQ6", "url": "https://www.uniprot.org/uniprotkb/Q94JQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "SAHLFALFQGLLKVLAGVDT", "down_seq": "FTVTSKAADDGEFSDLYLFK", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn958", "evidence": [ { "id": "Q94JQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q94JQ6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "958", "end_pos": "958" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1064", "end_pos": "1064" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q94JQ6-1.1064.1064", "start_pos": 1064, "end_pos": 1064, "uniprot_canonical_ac": "Q94JQ6-1", "length": 1084, "uniprot_id": "CESA6_ARATH", "protein_name": "Cellulose synthase A catalytic subunit 6 [UDP-forming]", "refseq_ac": "NP_201279", "refseq_name": "cellulose synthase 6", "gene_name": "CESA6", "gene_names_uniprotkb": "CESA6; IXR2; MVP7.7; PRC1; QUI", "gene_names_refseq": "CESA6; E112; ISOXABEN RESISTANT 2; IXR2; MVP7.7; MVP7_7; PRC1; PROCUSTE 1; cellulose synthase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94JQ6", "url": "https://www.uniprot.org/uniprotkb/Q94JQ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Resistance against herbicide isoxaben and cellulose deficiency caused by distinct mutations in same cellulose synthase isoform CESA6.", "journal": "Plant physiology", "date": "2002-02", "authors": "Desprez Thierry, Vernhettes Samantha, Fagard Mathilde, Refr\u00e9gier Guislaine, Desnos Thierry, Aletti Estelle, Py Nicolas, Pelletier Sandra, H\u00f6fte Herman", "evidence": [ { "database": "UniProtKB", "id": "Q94JQ6", "url": "https://www.uniprot.org/uniprotkb/Q94JQ6" } ], "reference": [ { "type": "PubMed", "id": "11842152", "url": "https://glygen.org/publication/PubMed/11842152" } ] } ], "crossref": [ { "id": "Q94JQ6", "url": "https://www.uniprot.org/uniprotkb/Q94JQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "11842152", "url": "https://glygen.org/publication/PubMed/11842152", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "R", "start_aa": "R", "up_seq": "PTIIVVWSILLASILTLLWV", "down_seq": "VNPFVAKGGPILEICGLDCL", "mutagenesis": [ { "sequence_org": "R", "sequence_mut": "W", "comment": "In ixr2-1; confers resistance to the herbicide isoxaben. Can complement prc1.", "evidence": [ { "database": "UniProtKB", "id": "Q94JQ6", "url": "https://www.uniprot.org/uniprotkb/Q94JQ6" }, { "database": "PubMed", "id": "11842152", "url": "https://glygen.org/publication/PubMed/11842152" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "958", "end_pos": "958" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1064", "end_pos": "1064" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "mutagenesis_flag" ], "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": true, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94JQ6-1.11.11", "start_pos": 11, "end_pos": 11, "uniprot_canonical_ac": "Q94JQ6-1", "length": 1084, "uniprot_id": "CESA6_ARATH", "protein_name": "Cellulose synthase A catalytic subunit 6 [UDP-forming]", "refseq_ac": "NP_201279", "refseq_name": "cellulose synthase 6", "gene_name": "CESA6", "gene_names_uniprotkb": "CESA6; IXR2; MVP7.7; PRC1; QUI", "gene_names_refseq": "CESA6; E112; ISOXABEN RESISTANT 2; IXR2; MVP7.7; MVP7_7; PRC1; PROCUSTE 1; cellulose synthase 6", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94JQ6", "url": "https://www.uniprot.org/uniprotkb/Q94JQ6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q94JQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94JQ6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q94JQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94JQ6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "MNTGGRLIAG", "down_seq": "HNRNEFVLINADENARIRSV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q94JQ6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94JQ6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser11" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "958", "end_pos": "958" } ] }, { "type": "mutagenesis", "site_list": [ { "start_pos": "1064", "end_pos": "1064" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "11", "end_pos": "11" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q94K07-1.41.41", "start_pos": 41, "end_pos": 41, "uniprot_canonical_ac": "Q94K07-1", "length": 374, "uniprot_id": "NAP1C_ARATH", "protein_name": "3; Nucleosome assembly protein 1", "refseq_ac": "NP_568844", "refseq_name": "nucleosome assembly protein 1;3", "gene_name": "3; NAP1", "gene_names_uniprotkb": "3; NAP1; MHM17.6; NFA3", "gene_names_refseq": "3; MHM17.6; MHM17_6; NAP1; NFA03; NFA3; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3; nucleosome assembly protein 1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94K07", "url": "https://www.uniprot.org/uniprotkb/Q94K07" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q94K07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94K07" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] } ], "crossref": [ { "id": "Q94K07", "url": "https://www.uniprot.org/uniprotkb/Q94K07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "Q94K07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94K07", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "DRAGLVNALKNKLQNLAGQH", "down_seq": "DVLENLTPKIRRRVEVLREI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q94K07", "url": "https://www.uniprot.org/uniprotkb/Q94K07" }, { "database": "iPTMnet", "id": "Q94K07", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q94K07" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ], "site_lbl": "Ser41" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "41", "end_pos": "41" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q96321-1.101.101", "start_pos": 101, "end_pos": 101, "uniprot_canonical_ac": "Q96321-1", "length": 532, "uniprot_id": "IMPA1_ARATH", "protein_name": "Importin subunit alpha-1", "refseq_ac": "", "refseq_name": "", "gene_name": "IMPA1", "gene_names_uniprotkb": "IMPA1; F3E22.14; KAP1; T8E24.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q96321", "url": "https://www.uniprot.org/uniprotkb/Q96321" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response.", "journal": "The Plant cell", "date": "2017-01", "authors": "Bhaskara Govinal Badiger, Wen Tuan-Nan, Nguyen Thao Thi, Verslues Paul E", "evidence": [ { "database": "iPTMnet", "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321" } ], "reference": [ { "type": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ] } ], "crossref": [ { "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VWSDDPALQLESTTQFRKLL", "down_seq": "IERSPPIEEVISAGVVPRFV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321" }, { "database": "PubMed", "id": "28011693", "url": "https://glygen.org/publication/PubMed/28011693" } ], "site_lbl": "Ser101" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "189", "end_pos": "189" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q96321-1.189.189", "start_pos": 189, "end_pos": 189, "uniprot_canonical_ac": "Q96321-1", "length": 532, "uniprot_id": "IMPA1_ARATH", "protein_name": "Importin subunit alpha-1", "refseq_ac": "", "refseq_name": "", "gene_name": "IMPA1", "gene_names_uniprotkb": "IMPA1; F3E22.14; KAP1; T8E24.1", "gene_names_refseq": "", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q96321", "url": "https://www.uniprot.org/uniprotkb/Q96321" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.", "journal": "Molecular systems biology", "date": "2008", "authors": "Sugiyama Naoyuki, Nakagami Hirofumi, Mochida Keiichi, Daudi Arsalan, Tomita Masaru, Shirasu Ken, Ishihama Yasushi", "evidence": [ { "database": "iPTMnet", "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321" } ], "reference": [ { "type": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" } ] }, { "title": "Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.", "journal": "Plant physiology", "date": "2010-07", "authors": "Nakagami Hirofumi, Sugiyama Naoyuki, Mochida Keiichi, Daudi Arsalan, Yoshida Yuko, Toyoda Tetsuro, Tomita Masaru, Ishihama Yasushi, Shirasu Ken", "evidence": [ { "database": "iPTMnet", "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321" } ], "reference": [ { "type": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" } ] }, { "title": "Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013-05", "authors": "Zhang Hongtao, Zhou Houjiang, Berke Lidija, Heck Albert J R, Mohammed Shabaz, Scheres Ben, Menke Frank L H", "evidence": [ { "database": "iPTMnet", "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321" } ], "reference": [ { "type": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" } ] }, { "title": "Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana.", "journal": "Science signaling", "date": "2013-04-09", "authors": "Umezawa Taishi, Sugiyama Naoyuki, Takahashi Fuminori, Anderson Jeffrey C, Ishihama Yasushi, Peck Scott C, Shinozaki Kazuo", "evidence": [ { "database": "iPTMnet", "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321" } ], "reference": [ { "type": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" } ] }, { "title": "Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013-07-02", "authors": "Wang Pengcheng, Xue Liang, Batelli Giorgia, Lee Shinyoung, Hou Yueh-Ju, Van Oosten Michael J, Zhang Huiming, Tao W Andy, Zhu Jian-Kang", "evidence": [ { "database": "iPTMnet", "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321" } ], "reference": [ { "type": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.", "journal": "Nature plants", "date": "2019-03", "authors": "Van Leene Jelle, Han Chao, Gadeyne Astrid, Eeckhout Dominique, Matthijs Caroline, Cannoot Bernard, De Winne Nancy, Persiau Geert, Van De Slijke Eveline, Van de Cotte Brigitte, Stes Elisabeth, Van Bel Michiel, Storme Veronique, Impens Francis, Gevaert Kris, Vandepoele Klaas, De Smet Ive, De Jaeger Geert", "evidence": [ { "database": "iPTMnet", "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321" } ], "reference": [ { "type": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ] } ], "crossref": [ { "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617", "database": "PubMed", "categories": [ "Other" ] }, { "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SPSDDVREQAVWALGNVAGD", "down_seq": "PRCRDLVLGCGALLPLLNQL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q96321", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q96321" }, { "database": "PubMed", "id": "18463617", "url": "https://glygen.org/publication/PubMed/18463617" }, { "database": "PubMed", "id": "20466843", "url": "https://glygen.org/publication/PubMed/20466843" }, { "database": "PubMed", "id": "23328941", "url": "https://glygen.org/publication/PubMed/23328941" }, { "database": "PubMed", "id": "23572148", "url": "https://glygen.org/publication/PubMed/23572148" }, { "database": "PubMed", "id": "23776212", "url": "https://glygen.org/publication/PubMed/23776212" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "30833711", "url": "https://glygen.org/publication/PubMed/30833711" } ], "site_lbl": "Ser189" } ], "all_sites": [ { "type": "phosphorylation", "site_list": [ { "start_pos": "101", "end_pos": "101" }, { "start_pos": "189", "end_pos": "189" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.228.228", "start_pos": 228, "end_pos": 228, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RYRSVDLSKENDDRKQNENK", "down_seq": "LKESETSGPTAAPMWAVAPP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser228", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9C518-1.211.211", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9C518-1.232.232", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C518-1.234.234", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9C518-1.235.235", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9C518-1.238.238", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.232.232", "start_pos": 232, "end_pos": 232, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VDLSKENDDRKQNENKSLKE", "down_seq": "ETSGPTAAPMWAVAPPSRSG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser232", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9C518-1.228.228", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9C518-1.234.234", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C518-1.235.235", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C518-1.238.238", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9C518-1.249.249", "categories": [ "glycosylation_flag" ] }, { "distance": 19, "direction": "upstream", "id": "Q9C518-1.251.251", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.234.234", "start_pos": 234, "end_pos": 234, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LSKENDDRKQNENKSLKESE", "down_seq": "SGPTAAPMWAVAPPSRSGAG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr234", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9C518-1.228.228", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9C518-1.232.232", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C518-1.235.235", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9C518-1.238.238", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9C518-1.249.249", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "upstream", "id": "Q9C518-1.251.251", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.235.235", "start_pos": 235, "end_pos": 235, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SKENDDRKQNENKSLKESET", "down_seq": "GPTAAPMWAVAPPSRSGAGN", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser235", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9C518-1.228.228", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C518-1.232.232", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C518-1.234.234", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C518-1.238.238", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9C518-1.249.249", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9C518-1.251.251", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.238.238", "start_pos": 238, "end_pos": 238, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "GLY_001156", "url": "https://data.glygen.org/GLY_001156", "database": "GlyGen", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "NDDRKQNENKSLKESETSGP", "down_seq": "AAPMWAVAPPSRSGAGNTFW", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr238", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr238", "evidence": [ { "id": "GLY_001156", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001156" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9C518-1.228.228", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9C518-1.232.232", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9C518-1.234.234", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C518-1.235.235", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9C518-1.249.249", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9C518-1.251.251", "categories": [ "glycosylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9C518-1.256.256", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.249.249", "start_pos": 249, "end_pos": 249, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "LKESETSGPTAAPMWAVAPP", "down_seq": "RSGAGNTFWMLPVPTTAGNQ", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser249", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "downstream", "id": "Q9C518-1.232.232", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9C518-1.234.234", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9C518-1.235.235", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9C518-1.238.238", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9C518-1.251.251", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9C518-1.256.256", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9C518-1.264.264", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9C518-1.265.265", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.251.251", "start_pos": 251, "end_pos": 251, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ESETSGPTAAPMWAVAPPSR", "down_seq": "GAGNTFWMLPVPTTAGNQME", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser251", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 19, "direction": "downstream", "id": "Q9C518-1.232.232", "categories": [ "glycosylation_flag" ] }, { "distance": 17, "direction": "downstream", "id": "Q9C518-1.234.234", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9C518-1.235.235", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9C518-1.238.238", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9C518-1.249.249", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9C518-1.256.256", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9C518-1.264.264", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9C518-1.265.265", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.256.256", "start_pos": 256, "end_pos": 256, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GPTAAPMWAVAPPSRSGAGN", "down_seq": "FWMLPVPTTAGNQMESSSNN", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr256", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9C518-1.238.238", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9C518-1.249.249", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9C518-1.251.251", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9C518-1.264.264", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9C518-1.265.265", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.264.264", "start_pos": 264, "end_pos": 264, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "AVAPPSRSGAGNTFWMLPVP", "down_seq": "TAGNQMESSSNNNTAAGHRA", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr264", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 15, "direction": "downstream", "id": "Q9C518-1.249.249", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9C518-1.251.251", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9C518-1.256.256", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C518-1.265.265", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.265.265", "start_pos": 265, "end_pos": 265, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VAPPSRSGAGNTFWMLPVPT", "down_seq": "AGNQMESSSNNNTAAGHRAP", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr265", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9C518-1.249.249", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "downstream", "id": "Q9C518-1.251.251", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9C518-1.256.256", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C518-1.264.264", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.36.36", "start_pos": 36, "end_pos": 36, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VATGGGARQLVDASLSIVPR", "down_seq": "TPPEDSTLATTSSTATATTT", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser36", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser36" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9C518-1.37.37", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C518-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9C518-1.43.43", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9C518-1.46.46", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9C518-1.47.47", "categories": [ "glycosylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9C518-1.48.48", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9C518-1.49.49", "categories": [ "glycosylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9C518-1.50.50", "categories": [ "glycosylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9C518-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.37.37", "start_pos": 37, "end_pos": 37, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ATGGGARQLVDASLSIVPRS", "down_seq": "PPEDSTLATTSSTATATTTK", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr37", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9C518-1.36.36", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9C518-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C518-1.43.43", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9C518-1.46.46", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9C518-1.47.47", "categories": [ "glycosylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9C518-1.48.48", "categories": [ "glycosylation_flag" ] }, { "distance": 12, "direction": "upstream", "id": "Q9C518-1.49.49", "categories": [ "glycosylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9C518-1.50.50", "categories": [ "glycosylation_flag" ] }, { "distance": 15, "direction": "upstream", "id": "Q9C518-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.43.43", "start_pos": 43, "end_pos": 43, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] }, { "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "RQLVDASLSIVPRSTPPEDS", "down_seq": "LATTSSTATATTTKRSTKDR", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr43", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr43" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag", "phosphorylation_flag" ], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9C518-1.36.36", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9C518-1.37.37", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C518-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C518-1.46.46", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9C518-1.47.47", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9C518-1.48.48", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C518-1.49.49", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9C518-1.50.50", "categories": [ "glycosylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9C518-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.46.46", "start_pos": 46, "end_pos": 46, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "VDASLSIVPRSTPPEDSTLA", "down_seq": "TSSTATATTTKRSTKDRHTK", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr46", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 10, "direction": "downstream", "id": "Q9C518-1.36.36", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9C518-1.37.37", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9C518-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C518-1.43.43", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C518-1.47.47", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9C518-1.48.48", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C518-1.49.49", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9C518-1.50.50", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C518-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.47.47", "start_pos": 47, "end_pos": 47, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "DASLSIVPRSTPPEDSTLAT", "down_seq": "SSTATATTTKRSTKDRHTKV", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr47", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9C518-1.36.36", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9C518-1.37.37", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9C518-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9C518-1.43.43", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C518-1.46.46", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C518-1.48.48", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9C518-1.49.49", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C518-1.50.50", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9C518-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ASLSIVPRSTPPEDSTLATT", "down_seq": "STATATTTKRSTKDRHTKVD", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser48", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 12, "direction": "downstream", "id": "Q9C518-1.36.36", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 11, "direction": "downstream", "id": "Q9C518-1.37.37", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9C518-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9C518-1.43.43", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9C518-1.46.46", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C518-1.47.47", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C518-1.49.49", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9C518-1.50.50", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9C518-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.49.49", "start_pos": 49, "end_pos": 49, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "SLSIVPRSTPPEDSTLATTS", "down_seq": "TATATTTKRSTKDRHTKVDG", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Ser", "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser49", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 13, "direction": "downstream", "id": "Q9C518-1.36.36", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 12, "direction": "downstream", "id": "Q9C518-1.37.37", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9C518-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9C518-1.43.43", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C518-1.46.46", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9C518-1.47.47", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C518-1.48.48", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C518-1.50.50", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C518-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.50.50", "start_pos": 50, "end_pos": 50, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LSIVPRSTPPEDSTLATTSS", "down_seq": "ATATTTKRSTKDRHTKVDGR", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr50", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9C518-1.36.36", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9C518-1.37.37", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9C518-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9C518-1.43.43", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9C518-1.46.46", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C518-1.47.47", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9C518-1.48.48", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C518-1.49.49", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9C518-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.52.52", "start_pos": 52, "end_pos": 52, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518", "database": "O-GlcNAc Atlas", "categories": [ "Glycoproteomics" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "IVPRSTPPEDSTLATTSSTA", "down_seq": "ATTTKRSTKDRHTKVDGRGR", "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_aa": "Thr", "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr52", "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 16, "direction": "downstream", "id": "Q9C518-1.36.36", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 15, "direction": "downstream", "id": "Q9C518-1.37.37", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "downstream", "id": "Q9C518-1.42.42", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9C518-1.43.43", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9C518-1.46.46", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9C518-1.47.47", "categories": [ "glycosylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9C518-1.48.48", "categories": [ "glycosylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C518-1.49.49", "categories": [ "glycosylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9C518-1.50.50", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.0.0", "start_pos": 0, "end_pos": 0, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2017-02-21", "authors": "Xu Shou-Ling, Chalkley Robert J, Maynard Jason C, Wang Wenfei, Ni Weimin, Jiang Xiaoyue, Shin Kihye, Cheng Ling, Savage Dasha, H\u00fchmer Andreas F R, Burlingame Alma L, Wang Zhi-Yong", "evidence": [ { "database": "O-GlcNAc Database", "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" }, { "database": "O-GlcNAc Atlas", "id": "Q9C518", "url": "https://oglcnac.org/atlas/detail/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133" } ] } ], "crossref": [ { "id": "28154133", "url": "https://glygen.org/publication/PubMed/28154133", "database": "PubMed", "categories": [ "Other" ] }, { "id": "Q9C518", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518", "database": "O-GlcNAc Database", "categories": [ "Other" ] } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "28154133", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/28154133" }, { "id": "Q9C518", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=Q9C518" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.211.211", "start_pos": 211, "end_pos": 211, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "The intrinsically disordered C-terminal region of Arabidopsis thaliana TCP8 transcription factor acts both as a transactivation and self-assembly domain.", "journal": "Molecular bioSystems", "date": "2013-09", "authors": "Valsecchi Isabel, Guittard-Crilat Emilie, Maldiney R\u00e9gis, Habricot Yvette, Lignon Sabrina, Lebrun R\u00e9gine, Miginiac Emile, Ruelland Eric, Jeannette Emmanuelle, Lebreton Sandrine", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "23760157", "url": "https://glygen.org/publication/PubMed/23760157" } ] } ], "crossref": [ { "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23760157", "url": "https://glygen.org/publication/PubMed/23760157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "NQDPVETIPEGENFSRKRYR", "down_seq": "VDLSKENDDRKQNENKSLKE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "23760157", "url": "https://glygen.org/publication/PubMed/23760157" } ], "site_lbl": "Ser211" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 17, "direction": "upstream", "id": "Q9C518-1.228.228", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.397.397", "start_pos": 397, "end_pos": 397, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "VEHQEKQQQSDHDDDSREEN", "down_seq": "NSSE", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser397" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9C518-1.400.400", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.400.400", "start_pos": 400, "end_pos": 400, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] } ], "crossref": [ { "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "QEKQQQSDHDDDSREENSNS", "down_seq": "", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ], "site_lbl": "Ser400" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9C518-1.397.397", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C518-1.42.42", "start_pos": 42, "end_pos": 42, "uniprot_canonical_ac": "Q9C518-1", "length": 401, "uniprot_id": "TCP8_ARATH", "protein_name": "Transcription factor TCP8", "refseq_ac": "NP_001077739", "refseq_name": "TCP family transcription factor", "gene_name": "TCP8", "gene_names_uniprotkb": "TCP8; T15M6.11; T18I24.2", "gene_names_refseq": "AtTCP8; T15M6.11; TCP domain protein 8; TCP8", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C518", "url": "https://www.uniprot.org/uniprotkb/Q9C518" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "ARQLVDASLSIVPRSTPPED", "down_seq": "TLATTSSTATATTTKRSTKD", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C518" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Ser42" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "228", "end_pos": "228" }, { "start_pos": "232", "end_pos": "232" }, { "start_pos": "234", "end_pos": "234" }, { "start_pos": "235", "end_pos": "235" }, { "start_pos": "238", "end_pos": "238" }, { "start_pos": "249", "end_pos": "249" }, { "start_pos": "251", "end_pos": "251" }, { "start_pos": "256", "end_pos": "256" }, { "start_pos": "264", "end_pos": "264" }, { "start_pos": "265", "end_pos": "265" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "37", "end_pos": "37" }, { "start_pos": "43", "end_pos": "43" }, { "start_pos": "46", "end_pos": "46" }, { "start_pos": "47", "end_pos": "47" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "49", "end_pos": "49" }, { "start_pos": "50", "end_pos": "50" }, { "start_pos": "52", "end_pos": "52" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "211", "end_pos": "211" }, { "start_pos": "36", "end_pos": "36" }, { "start_pos": "397", "end_pos": "397" }, { "start_pos": "400", "end_pos": "400" }, { "start_pos": "42", "end_pos": "42" }, { "start_pos": "43", "end_pos": "43" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9C518-1.36.36", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9C518-1.37.37", "categories": [ "glycosylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C518-1.43.43", "categories": [ "glycosylation_flag", "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9C518-1.46.46", "categories": [ "glycosylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9C518-1.47.47", "categories": [ "glycosylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C518-1.48.48", "categories": [ "glycosylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9C518-1.49.49", "categories": [ "glycosylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9C518-1.50.50", "categories": [ "glycosylation_flag" ] }, { "distance": 10, "direction": "upstream", "id": "Q9C518-1.52.52", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C8I6-1.137.137", "start_pos": 137, "end_pos": 137, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PSTQFELYLGPNLWSTVTTT", "down_seq": "ETEASIFEMIHILTTDRLQI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn137", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.179.179", "start_pos": 179, "end_pos": 179, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "LVKTGNATPFISALELRKLM", "down_seq": "TTYLTRQGSLQTFIRADVGA", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn179", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "upstream", "id": "Q9C8I6-1.182.182", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.223.223", "start_pos": 223, "end_pos": 223, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QGYRYGIDVFDRVWTPYNFG", "down_seq": "WSQISTNQSVNINNDYQPPE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn223", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q9C8I6-1.230.230", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.230.230", "start_pos": 230, "end_pos": 230, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "DVFDRVWTPYNFGNWSQIST", "down_seq": "QSVNINNDYQPPEIAMVTAS", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn230", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9C8I6-1.223.223", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.260.260", "start_pos": 260, "end_pos": 260, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QPPEIAMVTASVPTDPDAAM", "down_seq": "ISLVGVERTVQFYVFMHFAE", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn260", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.287.287", "start_pos": 287, "end_pos": 287, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "ERTVQFYVFMHFAEIQELKS", "down_seq": "DTREFNIMYNNKHIYGPFRP", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn287", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.309.309", "start_pos": 309, "end_pos": 309, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TREFNIMYNNKHIYGPFRPL", "down_seq": "FTTSSVFTPTEVVADANGQY", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn309", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.338.338", "start_pos": 338, "end_pos": 338, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PTEVVADANGQYIFSLQRTG", "down_seq": "STLPPLLNAMEIYSVNLLPQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn338", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.399.399", "start_pos": 399, "end_pos": 399, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NKIDWEGDPCVPLDYKWSGV", "down_seq": "CTYVDNETPKIISLDLSTSG", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn399", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.441.441", "start_pos": 441, "end_pos": 441, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "TGEILEFISDLTSLEVLDLS", "down_seq": "NSLTGSVPEFLANMETLKLI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn441", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.462.462", "start_pos": 462, "end_pos": 462, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "NSLTGSVPEFLANMETLKLI", "down_seq": "LSGNELNGSIPATLLDKERR", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn462", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "upstream", "id": "Q9C8I6-1.469.469", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.469.469", "start_pos": 469, "end_pos": 469, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "PEFLANMETLKLINLSGNEL", "down_seq": "GSIPATLLDKERRGSITLSI", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn469", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 7, "direction": "downstream", "id": "Q9C8I6-1.462.462", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.48.48", "start_pos": 48, "end_pos": 48, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "GFISLDCGSPRETSFREKTT", "down_seq": "ITYISDANFINTGVGGSIKQ", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn48", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.95.95", "start_pos": 95, "end_pos": 95, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "PRU00498", "url": "https://prosite.expasy.org/rule/PRU00498", "database": "PROSITE-ProRule", "categories": [ "Other" ] } ], "site_seq": "N", "start_aa": "N", "up_seq": "QQQTWNLRSFPQGIRNCYTL", "down_seq": "LTIGDEYLIRANFLHGGYDD", "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_aa": "Asn", "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn95", "evidence": [ { "id": "Q9C8I6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6#ptm_processing" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" } ] } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "glycosylation_flag" ], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "biomarkers": [], "glycosylation_flag": true, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": false, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 0 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_n_linked_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_aa", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.182.182", "start_pos": 182, "end_pos": 182, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A kinase-phosphatase signaling module with BSK8 and BSL2 involved in regulation of sucrose-phosphate synthase.", "journal": "Journal of proteome research", "date": "2014-07-03", "authors": "Wu XuNa, Sklodowski Kamil, Encke Bea, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ] } ], "crossref": [ { "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "TGNATPFISALELRKLMNTT", "down_seq": "LTRQGSLQTFIRADVGATVN", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" }, { "database": "PubMed", "id": "24924143", "url": "https://glygen.org/publication/PubMed/24924143" } ], "site_lbl": "Tyr182" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 3, "direction": "downstream", "id": "Q9C8I6-1.179.179", "categories": [ "glycosylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C8I6-1.550.550", "start_pos": 550, "end_pos": 550, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6", "database": "iPTMnet", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "IVTFLILKRKKRTKLGLNPN", "down_seq": "GTGTTPLHSRSHHGFEPPVI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "site_lbl": "Ser550" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "upstream", "id": "Q9C8I6-1.552.552", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9C8I6-1.554.554", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9C8I6-1.555.555", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9C8I6-1.559.559", "categories": [ "phosphorylation_flag" ] }, { "distance": 11, "direction": "upstream", "id": "Q9C8I6-1.561.561", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.552.552", "start_pos": 552, "end_pos": 552, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] } ], "crossref": [ { "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "TFLILKRKKRTKLGLNPNSG", "down_seq": "GTTPLHSRSHHGFEPPVIAK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ], "site_lbl": "Thr552" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 2, "direction": "downstream", "id": "Q9C8I6-1.550.550", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9C8I6-1.554.554", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "upstream", "id": "Q9C8I6-1.555.555", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9C8I6-1.559.559", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "upstream", "id": "Q9C8I6-1.561.561", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C8I6-1.554.554", "start_pos": 554, "end_pos": 554, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LILKRKKRTKLGLNPNSGTG", "down_seq": "TPLHSRSHHGFEPPVIAKNR", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Thr554" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 4, "direction": "downstream", "id": "Q9C8I6-1.550.550", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9C8I6-1.552.552", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "upstream", "id": "Q9C8I6-1.555.555", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9C8I6-1.559.559", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "upstream", "id": "Q9C8I6-1.561.561", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C8I6-1.555.555", "start_pos": 555, "end_pos": 555, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "ILKRKKRTKLGLNPNSGTGT", "down_seq": "PLHSRSHHGFEPPVIAKNRK", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Thr555" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 5, "direction": "downstream", "id": "Q9C8I6-1.550.550", "categories": [ "phosphorylation_flag" ] }, { "distance": 3, "direction": "downstream", "id": "Q9C8I6-1.552.552", "categories": [ "phosphorylation_flag" ] }, { "distance": 1, "direction": "downstream", "id": "Q9C8I6-1.554.554", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "upstream", "id": "Q9C8I6-1.559.559", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C8I6-1.561.561", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C8I6-1.559.559", "start_pos": 559, "end_pos": 559, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] } ], "crossref": [ { "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "KKRTKLGLNPNSGTGTTPLH", "down_seq": "RSHHGFEPPVIAKNRKLTYI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ], "site_lbl": "Ser559" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 9, "direction": "downstream", "id": "Q9C8I6-1.550.550", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9C8I6-1.552.552", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9C8I6-1.554.554", "categories": [ "phosphorylation_flag" ] }, { "distance": 4, "direction": "downstream", "id": "Q9C8I6-1.555.555", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "upstream", "id": "Q9C8I6-1.561.561", "categories": [ "phosphorylation_flag" ] }, { "distance": 18, "direction": "upstream", "id": "Q9C8I6-1.577.577", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C8I6-1.561.561", "start_pos": 561, "end_pos": 561, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [ { "title": "Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings.", "journal": "The Plant journal : for cell and molecular biology", "date": "2012-03", "authors": "Engelsberger Wolfgang R, Schulze Waltraud X", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" } ] }, { "title": "A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.", "journal": "Journal of proteomics", "date": "2013-01-14", "authors": "Wang Xu, Bian Yangyang, Cheng Kai, Gu Li-Fei, Ye Mingliang, Zou Hanfa, Sun Samuel Sai-Ming, He Jun-Xian", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" } ] }, { "title": "Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-03", "authors": "Roitinger Elisabeth, Hofer Manuel, K\u00f6cher Thomas, Pichler Peter, Novatchkova Maria, Yang Jianhua, Schl\u00f6gelhofer Peter, Mechtler Karl", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" } ] }, { "title": "Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways.", "journal": "Molecular & cellular proteomics : MCP", "date": "2015-08", "authors": "Choudhary Mani Kant, Nomura Yuko, Wang Lei, Nakagami Hirofumi, Somers David E", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" } ] }, { "title": "Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.", "journal": "The Plant journal : for cell and molecular biology", "date": "2016-12", "authors": "Menz Jochen, Li Zhi, Schulze Waltraud X, Ludewig Uwe", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" } ] }, { "title": "Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Mattei Benedetta, Spinelli Francesco, Pontiggia Daniela, De Lorenzo Giulia", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" } ], "reference": [ { "type": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ] } ], "crossref": [ { "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6", "database": "iPTMnet", "categories": [ "Other" ] }, { "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019", "database": "PubMed", "categories": [ "Other" ] }, { "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157", "database": "PubMed", "categories": [ "Other" ] }, { "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503", "database": "PubMed", "categories": [ "Other" ] }, { "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465", "database": "PubMed", "categories": [ "Other" ] }, { "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006", "database": "PubMed", "categories": [ "Other" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "RTKLGLNPNSGTGTTPLHSR", "down_seq": "HHGFEPPVIAKNRKLTYIDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9C8I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9C8I6" }, { "database": "PubMed", "id": "22060019", "url": "https://glygen.org/publication/PubMed/22060019" }, { "database": "PubMed", "id": "23111157", "url": "https://glygen.org/publication/PubMed/23111157" }, { "database": "PubMed", "id": "25561503", "url": "https://glygen.org/publication/PubMed/25561503" }, { "database": "PubMed", "id": "26091701", "url": "https://glygen.org/publication/PubMed/26091701" }, { "database": "PubMed", "id": "27419465", "url": "https://glygen.org/publication/PubMed/27419465" }, { "database": "PubMed", "id": "27532006", "url": "https://glygen.org/publication/PubMed/27532006" } ], "site_lbl": "Ser561" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 11, "direction": "downstream", "id": "Q9C8I6-1.550.550", "categories": [ "phosphorylation_flag" ] }, { "distance": 9, "direction": "downstream", "id": "Q9C8I6-1.552.552", "categories": [ "phosphorylation_flag" ] }, { "distance": 7, "direction": "downstream", "id": "Q9C8I6-1.554.554", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "downstream", "id": "Q9C8I6-1.555.555", "categories": [ "phosphorylation_flag" ] }, { "distance": 2, "direction": "downstream", "id": "Q9C8I6-1.559.559", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "upstream", "id": "Q9C8I6-1.577.577", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "id": "Q9C8I6-1.577.577", "start_pos": 577, "end_pos": 577, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "LHSRSHHGFEPPVIAKNRKL", "down_seq": "YIDVVKITNNFERVLGRGGF", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "site_lbl": "Thr577" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 18, "direction": "downstream", "id": "Q9C8I6-1.559.559", "categories": [ "phosphorylation_flag" ] }, { "distance": 16, "direction": "downstream", "id": "Q9C8I6-1.561.561", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.658.658", "start_pos": 658, "end_pos": 658, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "HKDLTCLVGYCEEGDKMSLI", "down_seq": "EFMANGDLKEHLSGKRGPSI", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "site_lbl": "Tyr658" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.744.744", "start_pos": 744, "end_pos": 744, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "S", "start_aa": "S", "up_seq": "AKLADFGLSRSFPLGTETHV", "down_seq": "TIVAGTPGYLDPEYYRTNWL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "site_lbl": "Ser744" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "upstream", "id": "Q9C8I6-1.745.745", "categories": [ "phosphorylation_flag" ] }, { "distance": 6, "direction": "upstream", "id": "Q9C8I6-1.750.750", "categories": [ "phosphorylation_flag" ] }, { "distance": 14, "direction": "upstream", "id": "Q9C8I6-1.758.758", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.745.745", "start_pos": 745, "end_pos": 745, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "KLADFGLSRSFPLGTETHVS", "down_seq": "IVAGTPGYLDPEYYRTNWLT", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "site_lbl": "Thr745" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 1, "direction": "downstream", "id": "Q9C8I6-1.744.744", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "upstream", "id": "Q9C8I6-1.750.750", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "upstream", "id": "Q9C8I6-1.758.758", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.750.750", "start_pos": 750, "end_pos": 750, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "T", "start_aa": "T", "up_seq": "GLSRSFPLGTETHVSTIVAG", "down_seq": "PGYLDPEYYRTNWLTEKSDV", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "site_lbl": "Thr750" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 6, "direction": "downstream", "id": "Q9C8I6-1.744.744", "categories": [ "phosphorylation_flag" ] }, { "distance": 5, "direction": "downstream", "id": "Q9C8I6-1.745.745", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "upstream", "id": "Q9C8I6-1.758.758", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "id": "Q9C8I6-1.758.758", "start_pos": 758, "end_pos": 758, "uniprot_canonical_ac": "Q9C8I6-1", "length": 894, "uniprot_id": "IOS1_ARATH", "protein_name": "LRR receptor-like serine/threonine-protein kinase IOS1", "refseq_ac": "NP_175591", "refseq_name": "Leucine-rich repeat protein kinase family protein", "gene_name": "IOS1", "gene_names_uniprotkb": "IOS1; F19C24.3", "gene_names_refseq": "F19C24.3; F19C24_3; IMPAIRED OOMYCETE SUSCEPTIBILITY 1; IOS1", "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "publication": [], "crossref": [ { "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6", "database": "UniProtKB", "categories": [ "Protein" ] } ], "site_seq": "Y", "start_aa": "Y", "up_seq": "GTETHVSTIVAGTPGYLDPE", "down_seq": "YRTNWLTEKSDVFSFGVVLL", "phosphorylation": [ { "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q9C8I6", "url": "https://www.uniprot.org/uniprotkb/Q9C8I6" } ], "site_lbl": "Tyr758" } ], "all_sites": [ { "type": "glycosylation", "site_list": [ { "start_pos": "137", "end_pos": "137" }, { "start_pos": "179", "end_pos": "179" }, { "start_pos": "223", "end_pos": "223" }, { "start_pos": "230", "end_pos": "230" }, { "start_pos": "260", "end_pos": "260" }, { "start_pos": "287", "end_pos": "287" }, { "start_pos": "309", "end_pos": "309" }, { "start_pos": "338", "end_pos": "338" }, { "start_pos": "399", "end_pos": "399" }, { "start_pos": "441", "end_pos": "441" }, { "start_pos": "462", "end_pos": "462" }, { "start_pos": "469", "end_pos": "469" }, { "start_pos": "48", "end_pos": "48" }, { "start_pos": "95", "end_pos": "95" } ] }, { "type": "phosphorylation", "site_list": [ { "start_pos": "182", "end_pos": "182" }, { "start_pos": "550", "end_pos": "550" }, { "start_pos": "552", "end_pos": "552" }, { "start_pos": "554", "end_pos": "554" }, { "start_pos": "555", "end_pos": "555" }, { "start_pos": "559", "end_pos": "559" }, { "start_pos": "561", "end_pos": "561" }, { "start_pos": "577", "end_pos": "577" }, { "start_pos": "658", "end_pos": "658" }, { "start_pos": "744", "end_pos": "744" }, { "start_pos": "745", "end_pos": "745" }, { "start_pos": "750", "end_pos": "750" }, { "start_pos": "758", "end_pos": "758" }, { "start_pos": "825", "end_pos": "825" } ] } ], "categories": [ "phosphorylation_flag" ], "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "biomarkers": [], "neighbors": [ { "distance": 14, "direction": "downstream", "id": "Q9C8I6-1.744.744", "categories": [ "phosphorylation_flag" ] }, { "distance": 13, "direction": "downstream", "id": "Q9C8I6-1.745.745", "categories": [ "phosphorylation_flag" ] }, { "distance": 8, "direction": "downstream", "id": "Q9C8I6-1.750.750", "categories": [ "phosphorylation_flag" ] } ], "glycosylation_flag": false, "snv_flag": false, "mutagenesis_flag": false, "phosphorylation_flag": true, "glycation_flag": false, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] } ]